F008945

General Info

Members Datasets Scaffolds Average Seq Length
101 72 201 202

Family's Representative Sequence

Representative Sequence 3300013100|Ga0157373_10309512|Ga0157373_103095122
Length 219
Sequence MAMFEALYEFAKSKMIRMEQLSFFPEAGQTPGLPPELLEYHPGLFSERECALLLHKFIVQSPWQQKVVKMYDKEVVTPRLCAWYADEETYDYTSLRRSTPNKWTPELVAIKQKVEQIAGVKFNSVLLNYYRDGNDSVAWHSDNEKALGKYPVIASVSFGQVRSFDIRYKQDHSEKYSIKLESGALMIMKGDLQQNWEHRIAKSLRPMTARVNLTFRVVI

Samples

Sample ID Description Type Environment
1 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
4 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
5 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
6 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
7 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
8 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
9 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
10 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
11 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
12 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
13 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
14 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
15 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
16 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
17 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
18 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
19 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
20 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
21 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
22 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
23 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
24 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
25 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
26 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
27 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
28 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
29 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
30 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
31 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
37 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
38 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
39 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
40 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
41 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
42 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
43 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
44 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
45 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
46 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
47 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
48 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
49 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
50 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
51 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
52 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
53 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
54 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
55 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
56 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
57 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
58 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
59 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
60 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
61 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
62 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
63 2582581278 Chryseobacterium sp. CF365 Isolate Rhizosphere
64 2585428182 Chryseobacterium sp. YR477 Isolate Rhizosphere
65 2585428183 Chryseobacterium sp. YR485 Isolate Rhizosphere
66 2588254257 Chryseobacterium sp. YR203 Isolate Rhizosphere
67 2738543023 Pedobacter sp. OK628 Isolate Unclassified
68 2739367663 Pedobacter sp. YR510 Isolate Unclassified
69 2751185877 Chryseobacterium artocarpi UTM-3 Isolate Rhizosphere
70 2765235839 Chryseobacterium indologenes AA5 Isolate Unclassified
71 2816332188 Chryseobacterium aquifrigidense 110 (version 2) Isolate Unclassified
72 2889290771 Chryseobacterium sp. PvR013 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 89.11
Metatranscriptomes 0
Isolates 10.89

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.91
Nodule 0
Rhizoplane 0
Rhizosphere 76.24
Stem 0
Stem Tuber 0
Unclassified 5.94

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0157373_10309512 3300013100 Bacteria 1122
2 SwRhRL2b_contig_3412754 2162886007 Bacteria 11884
3 JGI25162J39368_1002111 3300002737 Bacteria 8452
4 JGI25165J46597_1000414 3300003214 Bacteria 44920
5 rootH1_10089696 3300003316 Bacteria 2855
6 rootH1_10089696 3300003323 Bacteria 23278
7 rootL2_10153593 3300003322 Bacteria 4520
8 Ga0055534_1005361 3300003784 Bacteria 3448
9 Ga0065714_10002207 3300005288 Bacteria 86097
10 Ga0065714_10006447 3300005288 Bacteria 5351
11 Ga0065704_10070217 3300005289 Bacteria 69033
12 Ga0068853_100044180 3300005539 Bacteria 3814
13 Ga0068855_100145626 3300005563 Bacteria 2697
14 Ga0105237_10000206 3300009545 Bacteria 84005
15 Ga0105237_10006647 3300009545 Bacteria 12780
16 Ga0105238_10153657 3300009551 Bacteria 2276
17 Ga0105238_10494226 3300009551 Bacteria 1224
18 Ga0105238_10857654 3300009551 Bacteria 925
19 Ga0105239_10000006 3300010375 Bacteria 442319
20 Ga0105239_10000782 3300010375 Bacteria 45096
21 Ga0105239_10002630 3300010375 Bacteria 22684
22 Ga0105239_10003747 3300010375 Bacteria 18509
23 Ga0157373_10000440 3300013100 Bacteria 32951
24 Ga0157373_10008961 3300013100 Bacteria 7402
25 Ga0157373_10071353 3300013100 Bacteria 2453
26 Ga0157371_10000255 3300013102 Bacteria 74280
27 Ga0157371_10002650 3300013102 Bacteria 16949
28 Ga0157370_10001543 3300013104 Bacteria 28500
29 Ga0157370_10004295 3300013104 Bacteria 16400
30 Ga0157370_10028994 3300013104 Bacteria 5438
31 Ga0157370_10038092 3300013104 Bacteria 4654
32 Ga0157370_10536701 3300013104 Bacteria 1073
33 Ga0157369_10002137 3300013105 Bacteria 23838
34 Ga0157374_10000758 3300013296 Bacteria 28222
35 Ga0163162_11207255 3300013306 Bacteria 858
36 Ga0157372_10286192 3300013307 Bacteria 1917
37 Ga0157375_10000460 3300013308 Bacteria 37011
38 Ga0157375_10496174 3300013308 Bacteria 1385
39 Ga0182006_1001021 3300015261 Bacteria 18288
40 Ga0163161_10000341 3300017792 Bacteria 39792
41 Ga0163161_10664217 3300017792 Bacteria 865
42 Ga0213872_10099745 3300021361 Bacteria 1295
43 Ga0207427_100098 3300025231 Bacteria 122817
44 Ga0209437_100008 3300025233 Bacteria 921142
45 Ga0209026_1000595 3300025250 Bacteria 23580
46 Ga0209233_1000024 3300025261 Bacteria 695418
47 Ga0209455_1009299 3300025272 Bacteria 2593
48 Ga0209675_1000088 3300025291 Bacteria 147320
49 Ga0207654_10011049 3300025911 Bacteria 4595
50 Ga0207654_10146437 3300025911 Bacteria 1512
51 Ga0207695_10000235 3300025913 Bacteria 146984
52 Ga0207695_10151651 3300025913 Bacteria 2257
53 Ga0207671_10000286 3300025914 Bacteria 74604
54 Ga0207671_10002420 3300025914 Bacteria 19979
55 Ga0207671_10091921 3300025914 Bacteria 2287
56 Ga0207694_10009543 3300025924 Bacteria 7320
57 Ga0207694_10340055 3300025924 Bacteria 1241
58 Ga0207694_10662402 3300025924 Bacteria 880
59 Ga0207639_10042537 3300026041 Bacteria 3405
60 Ga0207639_10269472 3300026041 Bacteria 1493
61 Ga0307412_10000049 3300031911 Bacteria 151588
62 Ga0307414_10000142 3300032004 Bacteria 48979
63 Ga0307414_10092308 3300032004 Bacteria 2253
64 Ga0307415_100279034 3300032126 Bacteria 1373
65 Ga0436365_0329989 3300039437 Bacteria 1199
66 Ga0436361_0747603 3300039447 Bacteria 15844
67 Ga0439465_0000202 3300041413 Bacteria 15766
68 Ga0451837_0296194 3300041494 Unclassified 793
69 Ga0466961_0011377 3300044693 Bacteria 5690
70 Ga0466957_0600008 3300044842 Unclassified 771
71 Ga0466959_0490499 3300045049 Unclassified 831
72 Ga0495583_0313904 3300046506 Unclassified 622
73 Ga0495606_0000102 3300046507 Bacteria 146051
74 Ga0495643_0040947 3300046522 Bacteria 2528
75 Ga0495648_0043187 3300046524 Unclassified 2829
76 Ga0495663_0000703 3300046525 Bacteria 11501
77 Ga0495654_0000001 3300046530 Bacteria 1513197
78 Ga0495633_0000001 3300046558 Bacteria 801972
79 Ga0495661_0002165 3300046665 Bacteria 15358
80 Ga0495661_0005975 3300046665 Bacteria 8593
81 Ga0495670_0220116 3300046691 Bacteria 1008
82 Ga0495677_0017180 3300047445 Bacteria 2623
83 Ga0496117_0066306 3300048920 Bacteria 2450
84 Ga0496118_0081691 3300048921 Bacteria 2268
85 Ga0496118_0192519 3300048921 Bacteria 1218
86 Ga0496119_0326227 3300048922 Bacteria 750
87 Ga0496122_0000277 3300048925 Bacteria 114200
88 Ga0496124_0016341 3300048927 Bacteria 7061
89 Ga0500608_023082 3300053122 Unclassified 2891
90 Ga0501084_0018789 3300054114 Bacteria 5755
91 2585141750 2582581278 Bacteria 5296881
92 2588209159 2585428182 Bacteria 5007281
93 2588209508 2585428182 Bacteria 5007281
94 2588212697 2585428183 Bacteria 5166119
95 2590612616 2588254257 Bacteria 5436094
96 2739301412 2738543023 Bacteria 6767879
97 2739647701 2739367663 Bacteria 5040914
98 2753672295 2751185877 Bacteria 4921427
99 2765576604 2765235839 Bacteria 5314748
100 2816872505 2816332188 Bacteria 5133218
101 2889292953 2889290771 Bacteria 5530962
102 Ga0157373_10309512
103 SwRhRL2b_contig_3412754
104 JGI25162J39368_1002111
105 JGI25165J46597_1000414
106 rootH1_10089696
107 rootL2_10153593
108 Ga0055534_1005361
109 Ga0065714_10002207
110 Ga0065714_10006447
111 Ga0065704_10070217
112 Ga0068853_100044180
113 Ga0068855_100145626
114 Ga0105237_10000206
115 Ga0105237_10006647
116 Ga0105238_10153657
117 Ga0105238_10494226
118 Ga0105238_10857654
119 Ga0105239_10000006
120 Ga0105239_10000782
121 Ga0105239_10002630
122 Ga0105239_10003747
123 Ga0157373_10000440
124 Ga0157373_10008961
125 Ga0157373_10071353
126 Ga0157371_10000255
127 Ga0157371_10002650
128 Ga0157370_10001543
129 Ga0157370_10004295
130 Ga0157370_10028994
131 Ga0157370_10038092
132 Ga0157370_10536701
133 Ga0157369_10002137
134 Ga0157374_10000758
135 Ga0163162_11207255
136 Ga0157372_10286192
137 Ga0157375_10000460
138 Ga0157375_10496174
139 Ga0182006_1001021
140 Ga0163161_10000341
141 Ga0163161_10664217
142 Ga0213872_10099745
143 Ga0207427_100098
144 Ga0209437_100008
145 Ga0209026_1000595
146 Ga0209233_1000024
147 Ga0209455_1009299
148 Ga0209675_1000088
149 Ga0207654_10011049
150 Ga0207654_10146437
151 Ga0207695_10000235
152 Ga0207695_10151651
153 Ga0207671_10000286
154 Ga0207671_10002420
155 Ga0207671_10091921
156 Ga0207694_10009543
157 Ga0207694_10340055
158 Ga0207694_10662402
159 Ga0207639_10042537
160 Ga0207639_10269472
161 Ga0307412_10000049
162 Ga0307414_10000142
163 Ga0307414_10092308
164 Ga0307415_100279034
165 Ga0436365_0329989
166 Ga0436361_0747603
167 Ga0439465_0000202
168 Ga0451837_0296194
169 Ga0466961_0011377
170 Ga0466957_0600008
171 Ga0466959_0490499
172 Ga0495583_0313904
173 Ga0495606_0000102
174 Ga0495643_0040947
175 Ga0495648_0043187
176 Ga0495663_0000703
177 Ga0495654_0000001
178 Ga0495633_0000001
179 Ga0495661_0002165
180 Ga0495661_0005975
181 Ga0495670_0220116
182 Ga0495677_0017180
183 Ga0496117_0066306
184 Ga0496118_0081691
185 Ga0496118_0192519
186 Ga0496119_0326227
187 Ga0496122_0000277
188 Ga0496124_0016341
189 Ga0500608_023082
190 Ga0501084_0018789
191 2585141750
192 2588209159
193 2588209508
194 2588212697
195 2590612616
196 2739301412
197 2739647701
198 2753672295
199 2765576604
200 2816872505
201 2889292953

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF14560

Ubiquitin_2

Ubiquitin-like domain

92

157

0.92

PF13532

2OG-FeII_Oxy_2

2OG-Fe(II) oxygenase superfamily

38

216

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
3rzg-assembly1.cif.gz_A duplex interrogation by a direct dna repair protein in the search of damage 0.9001 16 202
3btz-assembly1.cif.gz_A crystal structure of human abh2 cross-linked to dsdna 0.8863 16 202
2iuw-assembly1.cif.gz_A-2 crystal structure of human abh3 in complex with iron ion and 2- oxoglutarate 0.8852 21 201
3s5a-assembly1.cif.gz_A abh2 cross-linked to undamaged dsdna-2 with cofactors 0.8744 16 202
3rzm-assembly1.cif.gz_A duplex interrogation by a direct dna repair protein in the search of damage 0.8682 21 202
ID Description Score Start End Superfamily
2iuwA00 Mainly Beta;Sandwich;Jelly Rolls;Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.8852 21 201 2.60.120.590
af_Q9SIE0_90_314_2.60.120.590 Mainly Beta;Sandwich;Jelly Rolls;Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.8817 21 202 2.60.120.590
3rzlA00 Mainly Beta;Sandwich;Jelly Rolls;Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.8614 16 202 2.60.120.590
af_L7N6A4_38_203_2.60.120.590 Mainly Beta;Sandwich;Jelly Rolls;Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.8561 33 199 2.60.120.590
af_I1MFT0_7_203_2.60.120.590 Mainly Beta;Sandwich;Jelly Rolls;Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.833 25 202 2.60.120.590
ID Description Score Start End GO Terms
AF-A0A432C9F2-F1-model_v4 Alpha-ketoglutarate-dependent dioxygenase AlkB 0.9812 105 202 GO:0006307
GO:0051213
AF-A0A7Y3C6G6-F1-model_v4 Alpha-ketoglutarate-dependent dioxygenase AlkB 0.9804 117 202 GO:0006307
GO:0008198
GO:0035516
GO:0051747
AF-A0A534AAZ2-F1-model_v4 Alpha-ketoglutarate-dependent dioxygenase AlkB 0.9784 121 201 GO:0006307
GO:0008198
GO:0035516
GO:0051747
AF-A0A4W5LK30-F1-model_v4 Fe2OG dioxygenase domain-containing protein 0.9782 114 202 GO:0005886
GO:0015250
AF-A0A6J6JAY5-F1-model_v4 Unannotated protein 0.978 86 201 GO:0006307
GO:0051213

Map