F009257

General Info

Members Datasets Scaffolds Average Seq Length
101 60 202 183

Family's Representative Sequence

Representative Sequence 3300025272|Ga0209455_1006429|Ga0209455_10064294
Length 205
Sequence MVSSLRAGRRWAPLLRGLLVWLGGMVLPHLGLAQGKFMTKTGHLTFFSASIMEDIEARNDKVAAVFDMNGGQIAFSVPIREFQFKRTLMQEHFNENYMESDKFPRATFTGQVLDAAQVLKLLGAGAQTVEVEGNLTIHGVTRKVVVAGTLQHRDGQMILVAYFNVAPADYAVDVPLLVREHIAKSVSVRLNVACDPVSPALTQQP

Samples

Sample ID Description Type Environment
1 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
4 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
5 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
6 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
7 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
8 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
9 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
10 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
11 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
12 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
13 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
14 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
15 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
16 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
17 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
18 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
19 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
20 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
21 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
22 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
23 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
24 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
25 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
26 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
27 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
28 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
39 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
41 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
42 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
43 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
44 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
45 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
46 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
47 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
48 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
49 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
50 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
51 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
52 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
53 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
54 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
55 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
56 3300053147 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 endosphere Metagenome Endosphere
57 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
58 2739367866 Hymenobacter sp. YR204 Isolate Unclassified
59 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
60 2929239360 Chitinophaga sp. R-73072 Hybrid assembly Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 97.03
Metatranscriptomes 0
Isolates 2.97

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.94
Nodule 0
Rhizoplane 0
Rhizosphere 89.11
Stem 0
Stem Tuber 0
Unclassified 8.91

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0209455_1006429 3300025272 Bacteria 3468
2 rootH1_10011548 3300003323 Bacteria 2645
3 rootH1_10078782 3300003323 Bacteria 5505
4 Ga0065714_10098143 3300005288 Bacteria 1707
5 Ga0070682_100141939 3300005337 Bacteria 1638
6 Ga0070659_100861861 3300005366 Bacteria 790
7 Ga0070710_10642366 3300005437 Bacteria 743
8 Ga0070663_100307776 3300005455 Unclassified 1270
9 Ga0070684_100254153 3300005535 Bacteria 1606
10 Ga0068853_100454368 3300005539 Bacteria 1205
11 Ga0068853_100569563 3300005539 Bacteria 1074
12 Ga0070665_100000031 3300005548 Bacteria 333365
13 Ga0068855_100007502 3300005563 Bacteria 13204
14 Ga0068855_100854155 3300005563 Bacteria 964
15 Ga0068857_100094245 3300005577 Bacteria 2681
16 Ga0068857_100253067 3300005577 Bacteria 1615
17 Ga0068856_100009867 3300005614 Bacteria 9272
18 Ga0068852_101438853 3300005616 Bacteria 711
19 Ga0068860_100280971 3300005843 Bacteria 1627
20 Ga0068862_100836091 3300005844 Unclassified 901
21 Ga0068871_100402740 3300006358 Bacteria 1219
22 Ga0075428_100009535 3300006844 Bacteria 10780
23 Ga0105240_10270259 3300009093 Bacteria 1958
24 Ga0111539_10003469 3300009094 Bacteria 20767
25 Ga0105237_10004911 3300009545 Bacteria 15298
26 Ga0105239_10016789 3300010375 Bacteria 8091
27 Ga0157370_10017949 3300013104 Bacteria 7125
28 Ga0157370_10116281 3300013104 Bacteria 2498
29 Ga0157374_10525346 3300013296 Bacteria 1190
30 Ga0157378_10020165 3300013297 Bacteria 5863
31 Ga0163162_11930795 3300013306 Bacteria 676
32 Ga0182008_10057880 3300014497 Bacteria 1914
33 Ga0207681_10110274 3300025923 Unclassified 2000
34 Ga0207690_11054092 3300025932 Bacteria 677
35 Ga0207679_10094644 3300025945 Unclassified 2320
36 Ga0207667_10009524 3300025949 Bacteria 11429
37 Ga0207667_10717911 3300025949 Bacteria 1001
38 Ga0207639_10488707 3300026041 Bacteria 1123
39 Ga0207639_10534968 3300026041 Bacteria 1074
40 Ga0207678_10355644 3300026067 Unclassified 1263
41 Ga0207702_11098601 3300026078 Bacteria 789
42 Ga0207648_10584266 3300026089 Bacteria 1028
43 Ga0207674_10110755 3300026116 Bacteria 2720
44 Ga0207698_11234440 3300026142 Bacteria 762
45 Ga0207428_10091913 3300027907 Unclassified 2355
46 Ga0268264_10798657 3300028381 Bacteria 943
47 Ga0265334_10019628 3300028573 Bacteria 2778
48 Ga0307511_10001284 3300030521 Bacteria 26623
49 Ga0265327_10023293 3300031251 Bacteria 3671
50 Ga0395901_0000293 3300038443 Bacteria 61974
51 Ga0451577_0000364 3300042876 Bacteria 84063
52 Ga0451577_0000585 3300042876 Bacteria 58478
53 Ga0451577_0000854 3300042876 Bacteria 45411
54 Ga0451577_0007394 3300042876 Bacteria 10783
55 Ga0451577_0011923 3300042876 Bacteria 8195
56 Ga0451577_0063930 3300042876 Bacteria 3282
57 Ga0451577_0121866 3300042876 Bacteria 2336
58 Ga0451577_0174199 3300042876 Bacteria 1939
59 Ga0451577_0216038 3300042876 Unclassified 1733
60 Ga0451577_0249585 3300042876 Unclassified 1606
61 Ga0451577_0283412 3300042876 Bacteria 1501
62 Ga0466972_0062314 3300044658 Bacteria 1787
63 Ga0453683_0000241 3300044673 Bacteria 72899
64 Ga0453683_0000482 3300044673 Bacteria 45741
65 Ga0453683_0050625 3300044673 Bacteria 2602
66 Ga0453683_0213362 3300044673 Bacteria 1226
67 Ga0453683_0250682 3300044673 Bacteria 1128
68 Ga0453683_0447579 3300044673 Bacteria 835
69 Ga0453684_0000081 3300044712 Bacteria 402985
70 Ga0453684_0001022 3300044712 Bacteria 89958
71 Ga0453684_0001284 3300044712 Bacteria 74993
72 Ga0453684_0001358 3300044712 Bacteria 71434
73 Ga0453684_0001730 3300044712 Bacteria 58478
74 Ga0453684_0005968 3300044712 Bacteria 23613
75 Ga0453684_0006392 3300044712 Bacteria 22447
76 Ga0453684_0016368 3300044712 Bacteria 11604
77 Ga0453684_0023687 3300044712 Bacteria 9021
78 Ga0453684_0266908 3300044712 Bacteria 1958
79 Ga0453684_0509920 3300044712 Bacteria 1330
80 Ga0453684_0719322 3300044712 Bacteria 1083
81 Ga0453684_0847245 3300044712 Bacteria 983
82 Ga0466957_0000218 3300044842 Bacteria 27018
83 Ga0466957_0019106 3300044842 Bacteria 4030
84 Ga0451576_0000294 3300045051 Bacteria 122276
85 Ga0451576_0000860 3300045051 Bacteria 58751
86 Ga0451576_0001055 3300045051 Bacteria 50745
87 Ga0451576_0017553 3300045051 Bacteria 7864
88 Ga0451576_0078668 3300045051 Bacteria 3431
89 Ga0451576_0227960 3300045051 Unclassified 1945
90 Ga0451576_0409983 3300045051 Bacteria 1421
91 Ga0501047_0058492 3300049581 Bacteria 3724
92 Ga0501044_0452324 3300049823 Bacteria 1191
93 nmdc:mga08y16_6561_c1 3300050511 Bacteria 12200
94 Ga0500583_0000004 3300053092 Bacteria 174723
95 Ga0500562_018641 3300053108 Bacteria 1792
96 Ga0500573_0309286 3300053140 Bacteria 786
97 Ga0500589_076345 3300053147 Bacteria 1505
98 Ga0500661_001081 3300055283 Bacteria 5134
99 2740032957 2739367866 Bacteria 4215900
100 2852631462 2852627209 Bacteria 5896285
101 2929239648 2929239360 Bacteria 7745570
102 Ga0209455_1006429
103 rootH1_10011548
104 rootH1_10078782
105 Ga0065714_10098143
106 Ga0070682_100141939
107 Ga0070659_100861861
108 Ga0070710_10642366
109 Ga0070663_100307776
110 Ga0070684_100254153
111 Ga0068853_100454368
112 Ga0068853_100569563
113 Ga0070665_100000031
114 Ga0068855_100007502
115 Ga0068855_100854155
116 Ga0068857_100094245
117 Ga0068857_100253067
118 Ga0068856_100009867
119 Ga0068852_101438853
120 Ga0068860_100280971
121 Ga0068862_100836091
122 Ga0068871_100402740
123 Ga0075428_100009535
124 Ga0105240_10270259
125 Ga0111539_10003469
126 Ga0105237_10004911
127 Ga0105239_10016789
128 Ga0157370_10017949
129 Ga0157370_10116281
130 Ga0157374_10525346
131 Ga0157378_10020165
132 Ga0163162_11930795
133 Ga0182008_10057880
134 Ga0207681_10110274
135 Ga0207690_11054092
136 Ga0207679_10094644
137 Ga0207667_10009524
138 Ga0207667_10717911
139 Ga0207639_10488707
140 Ga0207639_10534968
141 Ga0207678_10355644
142 Ga0207702_11098601
143 Ga0207648_10584266
144 Ga0207674_10110755
145 Ga0207698_11234440
146 Ga0207428_10091913
147 Ga0268264_10798657
148 Ga0265334_10019628
149 Ga0307511_10001284
150 Ga0265327_10023293
151 Ga0395901_0000293
152 Ga0451577_0000364
153 Ga0451577_0000585
154 Ga0451577_0000854
155 Ga0451577_0007394
156 Ga0451577_0011923
157 Ga0451577_0063930
158 Ga0451577_0121866
159 Ga0451577_0174199
160 Ga0451577_0216038
161 Ga0451577_0249585
162 Ga0451577_0283412
163 Ga0466972_0062314
164 Ga0453683_0000241
165 Ga0453683_0000482
166 Ga0453683_0050625
167 Ga0453683_0213362
168 Ga0453683_0250682
169 Ga0453683_0447579
170 Ga0453684_0000081
171 Ga0453684_0001022
172 Ga0453684_0001284
173 Ga0453684_0001358
174 Ga0453684_0001730
175 Ga0453684_0005968
176 Ga0453684_0006392
177 Ga0453684_0016368
178 Ga0453684_0023687
179 Ga0453684_0266908
180 Ga0453684_0509920
181 Ga0453684_0719322
182 Ga0453684_0847245
183 Ga0466957_0000218
184 Ga0466957_0019106
185 Ga0451576_0000294
186 Ga0451576_0000860
187 Ga0451576_0001055
188 Ga0451576_0017553
189 Ga0451576_0078668
190 Ga0451576_0227960
191 Ga0451576_0409983
192 Ga0501047_0058492
193 Ga0501044_0452324
194 nmdc:mga08y16_6561_c1
195 Ga0500583_0000004
196 Ga0500562_018641
197 Ga0500573_0309286
198 Ga0500589_076345
199 Ga0500661_001081
200 2740032957
201 2852631462
202 2929239648

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04264

YceI

YceI-like domain

28

194

0.76

Structural Annotation

Top 5 Hits

ID Description Score Start End
2x32-assembly1.cif.gz_A structure of a polyisoprenoid binding domain from saccharophagus degradans implicated in plant cell wall breakdown 0.8348 20 182
3q34-assembly1.cif.gz_C error: ('connection aborted.', connectionreseterror(104, 'connection reset by peer')) 0.8339 22 181
2x34-assembly2.cif.gz_B structure of a polyisoprenoid binding domain from saccharophagus degradans implicated in plant cell wall breakdown 0.8282 19 182
3q34-assembly2.cif.gz_D error: ('connection aborted.', connectionreseterror(104, 'connection reset by peer')) 0.8203 22 183
7xef-assembly1.cif.gz_A crystal structure of the y53f/n55a mutant of leh complexed with (r)-(1-benzyl-3-phenylpyrrolidin-3-yl)methanol 0.8199 108 140
ID Description Score Start End Superfamily
3q34B00 Mainly Beta;Beta Barrel;Lipocalin;Lipid/polyisoprenoid-binding, YceI-like 0.8298 22 182 2.40.128.110
2x34B00 Mainly Beta;Beta Barrel;Lipocalin;Lipid/polyisoprenoid-binding, YceI-like 0.8104 19 182 2.40.128.110
1nu3A00 Alpha Beta;Roll;Nuclear Transport Factor 2; Chain: A,; 0.8065 108 140 3.10.450.50
1wubA00 Mainly Beta;Beta Barrel;Lipocalin;Lipid/polyisoprenoid-binding, YceI-like 0.7949 22 179 2.40.128.110
3q34B00 Mainly Beta;Beta Barrel;Lipocalin;Lipid/polyisoprenoid-binding, YceI-like 0.794 22 182 2.40.128.110
ID Description Score Start End GO Terms
AF-A0A3M9MAU4-F1-model_v4 YceI family protein 0.9714 16 183
AF-A0A1J5H9U8-F1-model_v4 Lipid/polyisoprenoid-binding YceI-like domain-containing protein 0.9661 16 183
AF-A0A3M1YNP1-F1-model_v4 YceI family protein 0.9625 16 183
AF-A0A1V5NK49-F1-model_v4 YceI-like domain protein 0.9624 16 183
AF-A0A7Y5B9T5-F1-model_v4 YceI family protein 0.9616 16 183

Map