F015181

General Info

Members Datasets Scaffolds Average Seq Length
102 77 102 222

Family's Representative Sequence

Representative Sequence 3300025913|Ga0207695_10430651|Ga0207695_104306512
Length 250
Sequence MPPRRNSSLQNIWPGRERPGFFIFPDVRKSLPMPRENAAAKKERAEKICAVLQRTYPAAHCELNFSNPLQLLIATILSAQCTDKRVNIVTAELFKKYRSAKDFAEAPLADIEEAVKTTGFFRNKAKNIKACCAALVEKFNGEVPRTMDELHALAGVGRKTANVVLGNAFNINVGVVVDTHVTRLSNRLGLAQGTDAVKLEQELMKLVPQNDWMLFSHWLIWHGRRRCDARKPDCAGCEIKTFCPQIGIKK

Samples

Sample ID Description Type Environment
1 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
2 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
3 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
4 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
5 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
6 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
7 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
8 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
9 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
10 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
11 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
12 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
13 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
14 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
15 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
16 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
17 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
18 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
19 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
20 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
21 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
30 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
31 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
32 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
33 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
34 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
35 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
36 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
37 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
38 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
39 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
40 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
41 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
42 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
43 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
44 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
45 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
46 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
47 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
48 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
49 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
50 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
51 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
52 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
53 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
54 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
55 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
56 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
57 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
58 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
59 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
60 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
61 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
62 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
63 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
64 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
65 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
66 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
67 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
68 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
69 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
70 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
71 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
72 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
73 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
74 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
75 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
76 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
77 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 98.04
Stem 0
Stem Tuber 0
Unclassified 1.96

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10072221 3300003320 Bacteria 10660
2 rootH2_10143380 3300003320 Unclassified 2751
3 Ga0070689_100011647 3300005340 Bacteria 6306
4 Ga0070689_100023198 3300005340 Bacteria 4643
5 Ga0070713_100081015 3300005436 Bacteria 2769
6 Ga0070711_100379149 3300005439 Bacteria 1143
7 Ga0070705_100445665 3300005440 Bacteria 970
8 Ga0070685_10012204 3300005466 Bacteria 4509
9 Ga0070684_100142959 3300005535 Bacteria 2164
10 Ga0070686_100086390 3300005544 Unclassified 2088
11 Ga0070695_100360791 3300005545 Bacteria 1091
12 Ga0068856_100000329 3300005614 Bacteria 52134
13 Ga0068864_100383607 3300005618 Bacteria 1332
14 Ga0068863_100032452 3300005841 Bacteria 4978
15 Ga0081455_10079430 3300005937 Bacteria 2693
16 Ga0075429_100073618 3300006880 Bacteria 2975
17 Ga0105240_10151113 3300009093 Bacteria 2765
18 Ga0105240_10400776 3300009093 Bacteria 1545
19 Ga0105240_10797194 3300009093 Unclassified 1023
20 Ga0105242_10281780 3300009176 Bacteria 1510
21 Ga0105248_11074724 3300009177 Bacteria 909
22 Ga0105238_10013343 3300009551 Bacteria 8288
23 Ga0105238_10737853 3300009551 Bacteria 998
24 Ga0157369_10696360 3300013105 Bacteria 1046
25 Ga0157379_10695005 3300014968 Unclassified 954
26 Ga0207695_10100835 3300025913 Bacteria 2882
27 Ga0207695_10430651 3300025913 Bacteria 1203
28 Ga0207694_10009227 3300025924 Bacteria 7442
29 Ga0207694_10519366 3300025924 Bacteria 998
30 Ga0207686_10642711 3300025934 Bacteria 839
31 Ga0207670_10006849 3300025936 Bacteria 6342
32 Ga0207670_10051157 3300025936 Bacteria 2772
33 Ga0207661_10097425 3300025944 Bacteria 2463
34 Ga0207702_10113172 3300026078 Bacteria 2416
35 Ga0207641_10087259 3300026088 Bacteria 2722
36 Ga0207676_10436534 3300026095 Bacteria 1231
37 Ga0265337_1031006 3300028556 Bacteria 1589
38 Ga0265318_10104215 3300028577 Viruses 1043
39 Ga0265323_10000031 3300028653 Bacteria 77683
40 Ga0265322_10043935 3300028654 Bacteria 1272
41 Ga0265338_10000084 3300028800 Bacteria 175415
42 Ga0265338_10008214 3300028800 Bacteria 12711
43 Ga0265338_10024286 3300028800 Bacteria 6197
44 Ga0265338_10095365 3300028800 Bacteria 2444
45 Ga0265338_10139061 3300028800 Unclassified 1905
46 Ga0265324_10000231 3300029957 Bacteria 42193
47 Ga0265324_10003685 3300029957 Bacteria 7183
48 Ga0265324_10012812 3300029957 Bacteria 3149
49 Ga0265324_10037617 3300029957 Bacteria 1681
50 Ga0265324_10077309 3300029957 Bacteria 1132
51 Ga0265327_10000313 3300031251 Bacteria 93102
52 Ga0265327_10001465 3300031251 Bacteria 29582
53 Ga0265316_10014071 3300031344 Bacteria 7064
54 Ga0307408_100035414 3300031548 Bacteria 3503
55 Ga0316578_10122780 3300031728 Bacteria 1562
56 Ga0307405_10177322 3300031731 Bacteria 1526
57 Ga0307406_10015255 3300031901 Unclassified 4442
58 Ga0307412_10013191 3300031911 Bacteria 4837
59 Ga0307416_100006657 3300032002 Bacteria 7250
60 Ga0307414_10017153 3300032004 Bacteria 4424
61 Ga0307411_10002447 3300032005 Bacteria 8208
62 Ga0307415_100002892 3300032126 Bacteria 8606
63 Ga0373928_0001192 3300035084 Bacteria 5127
64 Ga0373929_0000650 3300035085 Bacteria 6688
65 Ga0373944_0000485 3300035089 Bacteria 9221
66 Ga0373949_0004155 3300035090 Bacteria 3344
67 Ga0373951_0078663 3300035091 Bacteria 850
68 Ga0373932_0000001 3300035112 Bacteria 1459067
69 Ga0373945_0011105 3300035116 Bacteria 2972
70 Ga0373946_0077711 3300035171 Bacteria 1447
71 Ga0373962_0000060 3300035242 Bacteria 23790
72 Ga0373931_0000002 3300035691 Bacteria 599830
73 Ga0373935_0017648 3300035692 Bacteria 4333
74 Ga0373927_0007386 3300035695 Bacteria 7436
75 Ga0373927_0027133 3300035695 Bacteria 3741
76 Ga0373927_0031479 3300035695 Bacteria 3457
77 Ga0373925_0000497 3300037068 Bacteria 39608
78 Ga0373925_0030720 3300037068 Bacteria 3944
79 Ga0451577_0339001 3300042876 Bacteria 1364
80 Ga0453684_0158996 3300044712 Unclassified 2675
81 Ga0453684_0657092 3300044712 Bacteria 1143
82 Ga0453684_0843573 3300044712 Unclassified 985
83 Ga0451576_0026494 3300045051 Bacteria 6237
84 Ga0451576_0209032 3300045051 Unclassified 2038
85 Ga0495592_0426679 3300046454 Bacteria 835
86 Ga0495652_0516692 3300046529 Bacteria 826
87 Ga0495586_0135587 3300046535 Bacteria 1380
88 Ga0495587_0241641 3300046536 Bacteria 1016
89 Ga0495645_0034979 3300046543 Unclassified 3663
90 Ga0495645_0436886 3300046543 Bacteria 828
91 Ga0495599_0266451 3300046678 Bacteria 1040
92 Ga0501031_0023686 3300049568 Bacteria 4002
93 Ga0501032_0132289 3300049569 Bacteria 1645
94 Ga0501033_0299903 3300049570 Bacteria 1131
95 Ga0501037_0048544 3300049573 Bacteria 3110
96 Ga0501070_0475989 3300049586 Bacteria 1005
97 Ga0501080_0028007 3300049742 Bacteria 5240
98 Ga0501080_0044333 3300049742 Bacteria 4141
99 Ga0501044_0016200 3300049823 Bacteria 8013
100 nmdc:mga09592_73039_c1 3300050508 Bacteria 2914
101 nmdc:mga06r32_92081_c1 3300050510 Bacteria 2963
102 nmdc:mga08y16_83371_c1 3300050511 Bacteria 3331

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046454 Ga0495592_0426679 Ga0495592_0426679_213_818 201
2 3300046529 Ga0495652_0516692 Ga0495652_0516692_91_753 204
3 3300046543 Ga0495645_0034979 Ga0495645_0034979_844_1506 204
4 3300025934 Ga0207686_10642711 Ga0207686_106427111 210
5 3300049742 Ga0501080_0028007 Ga0501080_0028007_277_915 212
6 3300028800 Ga0265338_10000084 Ga0265338_1000008445 213
7 3300044712 Ga0453684_0158996 Ga0453684_0158996_1767_2408 213
8 3300009176 Ga0105242_10281780 Ga0105242_102817802 215
9 3300009177 Ga0105248_11074724 Ga0105248_110747242 216
10 3300045051 Ga0451576_0026494 Ga0451576_0026494_4451_5101 216
11 3300005340 Ga0070689_100011647 Ga0070689_1000116475 217
12 3300005340 Ga0070689_100023198 Ga0070689_1000231985 217
13 3300005466 Ga0070685_10012204 Ga0070685_100122044 217
14 3300005545 Ga0070695_100360791 Ga0070695_1003607912 217
15 3300005937 Ga0081455_10079430 Ga0081455_100794302 217
16 3300006880 Ga0075429_100073618 Ga0075429_1000736184 217
17 3300025936 Ga0207670_10006849 Ga0207670_100068492 217
18 3300025936 Ga0207670_10051157 Ga0207670_100511574 217
19 3300028800 Ga0265338_10008214 Ga0265338_1000821411 217
20 3300029957 Ga0265324_10037617 Ga0265324_100376172 217
21 3300035091 Ga0373951_0078663 Ga0373951_0078663_44_697 217
22 3300050508 nmdc:mga09592_73039_c1 nmdc:mga09592_73039_c1_2094_2747 217
23 3300050511 nmdc:mga08y16_83371_c1 nmdc:mga08y16_83371_c1_1499_2152 217
24 3300005440 Ga0070705_100445665 Ga0070705_1004456652 218
25 3300005544 Ga0070686_100086390 Ga0070686_1000863903 218
26 3300005618 Ga0068864_100383607 Ga0068864_1003836071 218
27 3300009093 Ga0105240_10797194 Ga0105240_107971941 218
28 3300009551 Ga0105238_10013343 Ga0105238_100133434 218
29 3300009551 Ga0105238_10737853 Ga0105238_107378531 218
30 3300014968 Ga0157379_10695005 Ga0157379_106950051 218
31 3300025913 Ga0207695_10430651 Ga0207695_104306512 218
32 3300025924 Ga0207694_10009227 Ga0207694_100092274 218
33 3300025924 Ga0207694_10519366 Ga0207694_105193661 218
34 3300026095 Ga0207676_10436534 Ga0207676_104365341 218
35 3300028800 Ga0265338_10139061 Ga0265338_101390612 218
36 3300029957 Ga0265324_10012812 Ga0265324_100128123 218
37 3300029957 Ga0265324_10077309 Ga0265324_100773092 218
38 3300031251 Ga0265327_10000313 Ga0265327_1000031365 218
39 3300031251 Ga0265327_10001465 Ga0265327_1000146524 218
40 3300035084 Ga0373928_0001192 Ga0373928_0001192_1158_1832 218
41 3300035085 Ga0373929_0000650 Ga0373929_0000650_270_944 218
42 3300035089 Ga0373944_0000485 Ga0373944_0000485_4738_5412 218
43 3300035090 Ga0373949_0004155 Ga0373949_0004155_262_936 218
44 3300035112 Ga0373932_0000001 Ga0373932_0000001_973115_973789 218
45 3300035116 Ga0373945_0011105 Ga0373945_0011105_502_1176 218
46 3300035171 Ga0373946_0077711 Ga0373946_0077711_130_804 218
47 3300035242 Ga0373962_0000060 Ga0373962_0000060_13046_13720 218
48 3300035691 Ga0373931_0000002 Ga0373931_0000002_521609_522283 218
49 3300035695 Ga0373927_0007386 Ga0373927_0007386_974_1648 218
50 3300035695 Ga0373927_0031479 Ga0373927_0031479_1801_2457 218
51 3300037068 Ga0373925_0000497 Ga0373925_0000497_18877_19551 218
52 3300037068 Ga0373925_0030720 Ga0373925_0030720_739_1395 218
53 3300044712 Ga0453684_0657092 Ga0453684_0657092_21_773 218
54 3300046536 Ga0495587_0241641 Ga0495587_0241641_195_851 218
55 3300046543 Ga0495645_0436886 Ga0495645_0436886_123_779 218
56 3300049568 Ga0501031_0023686 Ga0501031_0023686_762_1418 218
57 3300049569 Ga0501032_0132289 Ga0501032_0132289_423_1079 218
58 3300049570 Ga0501033_0299903 Ga0501033_0299903_24_680 218
59 3300049573 Ga0501037_0048544 Ga0501037_0048544_456_1112 218
60 3300049586 Ga0501070_0475989 Ga0501070_0475989_77_733 218
61 3300049742 Ga0501080_0044333 Ga0501080_0044333_3450_4106 218
62 3300049823 Ga0501044_0016200 Ga0501044_0016200_5802_6458 218
63 3300003320 rootH2_10143380 rootH2_101433802 219
64 3300035695 Ga0373927_0027133 Ga0373927_0027133_1811_2470 219
65 3300046678 Ga0495599_0266451 Ga0495599_0266451_63_722 219
66 3300009093 Ga0105240_10151113 Ga0105240_101511133 220
67 3300013105 Ga0157369_10696360 Ga0157369_106963602 220
68 3300025913 Ga0207695_10100835 Ga0207695_101008353 220
69 3300046535 Ga0495586_0135587 Ga0495586_0135587_36_698 220
70 3300005535 Ga0070684_100142959 Ga0070684_1001429592 221
71 3300009093 Ga0105240_10400776 Ga0105240_104007762 221
72 3300025944 Ga0207661_10097425 Ga0207661_100974252 221
73 3300028653 Ga0265323_10000031 Ga0265323_1000003142 221
74 3300028654 Ga0265322_10043935 Ga0265322_100439351 221
75 3300028800 Ga0265338_10024286 Ga0265338_100242866 221
76 3300031344 Ga0265316_10014071 Ga0265316_100140717 221
77 3300031548 Ga0307408_100035414 Ga0307408_1000354141 221
78 3300031731 Ga0307405_10177322 Ga0307405_101773222 221
79 3300031901 Ga0307406_10015255 Ga0307406_100152553 221
80 3300031911 Ga0307412_10013191 Ga0307412_100131914 221
81 3300032002 Ga0307416_100006657 Ga0307416_1000066575 221
82 3300032004 Ga0307414_10017153 Ga0307414_100171532 221
83 3300032005 Ga0307411_10002447 Ga0307411_1000244710 221
84 3300032126 Ga0307415_100002892 Ga0307415_1000028928 221
85 3300042876 Ga0451577_0339001 Ga0451577_0339001_226_891 221
86 3300005436 Ga0070713_100081015 Ga0070713_1000810153 222
87 3300028556 Ga0265337_1031006 Ga0265337_10310061 222
88 3300035692 Ga0373935_0017648 Ga0373935_0017648_1053_1721 222
89 3300028577 Ga0265318_10104215 Ga0265318_101042151 223
90 3300028800 Ga0265338_10095365 Ga0265338_100953652 223
91 3300031728 Ga0316578_10122780 Ga0316578_101227802 223
92 3300050510 nmdc:mga06r32_92081_c1 nmdc:mga06r32_92081_c1_788_1459 223
93 3300003320 rootH2_10072221 rootH2_100722212 225
94 3300005439 Ga0070711_100379149 Ga0070711_1003791491 225
95 3300005614 Ga0068856_100000329 Ga0068856_10000032922 225
96 3300005841 Ga0068863_100032452 Ga0068863_1000324527 225
97 3300026078 Ga0207702_10113172 Ga0207702_101131722 225
98 3300026088 Ga0207641_10087259 Ga0207641_100872592 225
99 3300029957 Ga0265324_10000231 Ga0265324_1000023117 225
100 3300029957 Ga0265324_10003685 Ga0265324_100036854 225
101 3300044712 Ga0453684_0843573 Ga0453684_0843573_180_881 225
102 3300045051 Ga0451576_0209032 Ga0451576_0209032_724_1425 225

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00730

HhH-GPD

HhH-GPD superfamily base excision DNA repair protein

73

209

0.96

PF00633

HHH

Helix-hairpin-helix motif

138

166

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
1p59-assembly1.cif.gz_A structure of a non-covalent endonuclease iii-dna complex 0.9359 10 213
1orp-assembly1.cif.gz_A structure of a trapped endonuclease iii-dna covalent intermediate: estranged-adenine complex 0.9357 10 213
2abk-assembly1.cif.gz_A refinement of the native structure of endonuclease iii to a resolution of 1.85 angstrom 0.917 10 217
2abk-assembly1.cif.gz_A refinement of the native structure of endonuclease iii to a resolution of 1.85 angstrom 0.897 10 217
1orp-assembly1.cif.gz_A structure of a trapped endonuclease iii-dna covalent intermediate: estranged-adenine complex 0.8938 10 213
ID Description Score Start End Superfamily
af_P9WQ11_33_143_1.10.340.30 Mainly Alpha;Orthogonal Bundle;Endonuclease III; domain 1;Hypothetical protein; domain 2 0.9711 29 139 1.10.340.30
af_P9WQ11_33_143_1.10.340.30 Mainly Alpha;Orthogonal Bundle;Endonuclease III; domain 1;Hypothetical protein; domain 2 0.9625 29 139 1.10.340.30
af_P0AB83_21_132_1.10.340.30 Mainly Alpha;Orthogonal Bundle;Endonuclease III; domain 1;Hypothetical protein; domain 2 0.9555 28 139 1.10.340.30
af_P0AB83_21_132_1.10.340.30 Mainly Alpha;Orthogonal Bundle;Endonuclease III; domain 1;Hypothetical protein; domain 2 0.9473 28 139 1.10.340.30
af_Q58030_26_127_1.10.340.30 Mainly Alpha;Orthogonal Bundle;Endonuclease III; domain 1;Hypothetical protein; domain 2 0.9451 38 137 1.10.340.30
ID Description Score Start End GO Terms
AF-A0A3D1TFJ7-F1-model_v4 Endonuclease III 0.9845 64 212 GO:0003677
GO:0004519
GO:0006285
GO:0019104
GO:0046872
GO:0051539
AF-A0A4P5UR20-F1-model_v4 Endonuclease III (EC 4.2.99.18) (DNA-(apurinic or apyrimidinic site) lyase) 0.9835 3 213 GO:0003677
GO:0004519
GO:0006285
GO:0019104
GO:0046872
GO:0051539
GO:0140078
AF-A0A2V8RGQ0-F1-model_v4 Endonuclease III (EC 4.2.99.18) (DNA-(apurinic or apyrimidinic site) lyase) 0.9828 8 212 GO:0003677
GO:0004519
GO:0006285
GO:0019104
GO:0046872
GO:0051539
GO:0140078
AF-A0A146GC34-F1-model_v4 Endonuclease III (EC 4.2.99.18) (DNA-(apurinic or apyrimidinic site) lyase) 0.9827 9 212 GO:0003677
GO:0004519
GO:0006285
GO:0019104
GO:0046872
GO:0051539
GO:0140078
AF-A0A7C7TBJ8-F1-model_v4 Endonuclease III (EC 4.2.99.18) (DNA-(apurinic or apyrimidinic site) lyase) 0.9825 1 213 GO:0003677
GO:0004519
GO:0006285
GO:0019104
GO:0046872
GO:0051539
GO:0140078

Feature Viewer

pLDDT pTM Quality
92.54 0.87 High
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Predicted Structure (AlphaFold2)

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