F022066

General Info

Members Datasets Scaffolds Average Seq Length
103 84 100 436

Family's Representative Sequence

Representative Sequence 3300039450|Ga0436363_0117506|Ga0436363_0117506_5031_6467
Length 478
Sequence MEHQPPHRSRGGRAPQLTSPPRGASLGAVPRTDTIVAIATPPGRGGIGIVRLSGPKVPELAAVLLGELPRPRHATFARFQAADGAALDAGLALFFPGPHSYTGEHVLELHGHGGPLVLEALQARALELGARRALPGEFTQRAFLNDKLDLAQAEAVADLIEAGSREAARAAMRSLQGEFSSMVQGLTEALIELRTYVEAAIDFPEEEIDFLADRELTERFAAVRAHFAAVQASAQQGRLLREGMTVVIAGRPNAGKSSLLNRLAGYDAAIVTDLPGTTRDVLRERIEIDGMPLHVLDTAGLREAQDRIEAEGIRRAQAEMARADRVLFVIDAAADPAGAAFAAERGQLPPSLPVTLVFNKCDLSRGLPLADTLSGPPRLYLSALTGEGVPALREHLKRSMGYQSAAGSTVSARARHLEALTRARSHTEEAERQLREHRAGELVSEELRLAQQALSEITGEFSSEDLLGRIFASFCIGK

Samples

Sample ID Description Type Environment
1 2808606379 Pseudomonas sp. SJZ079 Isolate Rhizosphere
2 2898795034 Rhodobacter sp. SGA-6-6 Isolate Rhizosphere
3 2989392574 Methylomonas rhizoryzae GJ1 Isolate Unclassified
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
6 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
7 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
8 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
9 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
10 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
11 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
12 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
13 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
14 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
15 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
16 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
17 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
18 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
19 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
20 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
21 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
22 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
23 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
24 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
25 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
26 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
27 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
28 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300027512 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
40 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
41 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
42 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
43 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
44 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
45 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
46 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
47 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
48 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
49 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
50 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
51 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
52 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
53 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
54 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
55 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
56 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
57 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
58 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
59 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
60 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
61 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
62 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
63 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
64 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
65 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
66 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
67 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
68 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
69 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
70 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
71 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
72 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
73 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
74 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
75 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
76 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
77 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
78 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
79 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
80 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
81 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
82 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
83 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
84 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.09
Metatranscriptomes 0
Isolates 2.91

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.91
Nodule 0
Rhizoplane 4.85
Rhizosphere 73.79
Stem 0
Stem Tuber 0
Unclassified 18.45

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070680_100127749 3300005336 Bacteria 2125
2 Ga0070660_100002708 3300005339 Bacteria 12167
3 Ga0070667_100025585 3300005367 Bacteria 4907
4 Ga0070681_10001254 3300005458 Bacteria 22091
5 Ga0070681_10007381 3300005458 Bacteria 10745
6 Ga0070681_10045521 3300005458 Bacteria 4389
7 Ga0070679_100033796 3300005530 Bacteria 5064
8 Ga0070679_100037832 3300005530 Bacteria 4795
9 Ga0070665_100038682 3300005548 Bacteria 4795
10 Ga0068864_100033345 3300005618 Bacteria 4377
11 Ga0068861_100014812 3300005719 Bacteria 5479
12 Ga0068863_100032386 3300005841 Bacteria 4983
13 Ga0068860_100007598 3300005843 Bacteria 10849
14 Ga0068862_100178757 3300005844 Bacteria 1903
15 Ga0081455_10055658 3300005937 Bacteria 3364
16 Ga0081539_10000007 3300005985 Bacteria 532790
17 Ga0097621_100032948 3300006237 Bacteria 4122
18 Ga0075428_100013809 3300006844 Bacteria 8993
19 Ga0105240_10000088 3300009093 Bacteria 186026
20 Ga0105240_10033559 3300009093 Bacteria 6628
21 Ga0105245_10010456 3300009098 Bacteria 8079
22 Ga0105249_10061644 3300009553 Bacteria 3443
23 Ga0157369_10027891 3300013105 Bacteria 6255
24 Ga0157369_10045500 3300013105 Bacteria 4773
25 Ga0157374_10010322 3300013296 Bacteria 8033
26 Ga0157378_10075252 3300013297 Bacteria 3039
27 Ga0157372_10441560 3300013307 Bacteria 1517
28 Ga0163163_10050419 3300014325 Bacteria 4099
29 Ga0157380_10073713 3300014326 Bacteria 2769
30 Ga0157380_10200429 3300014326 Bacteria 1770
31 Ga0207682_10025495 3300025893 Bacteria 2345
32 Ga0207707_10014745 3300025912 Bacteria 6811
33 Ga0207707_10080755 3300025912 Bacteria 2839
34 Ga0207695_10000755 3300025913 Bacteria 62189
35 Ga0207660_10021999 3300025917 Bacteria 4293
36 Ga0207652_10021848 3300025921 Bacteria 5285
37 Ga0207652_10151176 3300025921 Bacteria 2079
38 Ga0207686_10065984 3300025934 Bacteria 2310
39 Ga0207703_10005910 3300026035 Bacteria 9808
40 Ga0207676_10004673 3300026095 Bacteria 9700
41 Ga0207675_100056961 3300026118 Bacteria 3646
42 Ga0209179_1000011 3300027512 Bacteria 66977
43 Ga0268265_10076906 3300028380 Bacteria 2620
44 Ga0307515_10035494 3300028794 Bacteria 8109
45 Ga0307511_10001773 3300030521 Bacteria 22686
46 Ga0314311_1030261 3300030733 Bacteria 2204
47 Ga0265330_10028251 3300031235 Bacteria 2529
48 Ga0265331_10012704 3300031250 Bacteria 4551
49 Ga0265327_10020185 3300031251 Bacteria 4067
50 Ga0307509_10000008 3300031507 Bacteria 354271
51 Ga0316575_10024400 3300031665 Bacteria 2341
52 Ga0316575_10041490 3300031665 Bacteria 1820
53 Ga0316579_10002419 3300031691 Bacteria 7044
54 Ga0316579_10012932 3300031691 Bacteria 3584
55 Ga0316578_10004449 3300031728 Bacteria 6622
56 Ga0316577_10015050 3300031733 Bacteria 4252
57 Ga0307413_10000264 3300031824 Bacteria 15912
58 Ga0307413_10100727 3300031824 Bacteria 1908
59 Ga0307414_10011703 3300032004 Bacteria 5156
60 Ga0316580_10022354 3300032139 Bacteria 1951
61 Ga0316574_0003046 3300035398 Bacteria 8547
62 Ga0316574_0011338 3300035398 Bacteria 5062
63 Ga0373935_0007355 3300035692 Bacteria 6586
64 Ga0373927_0106625 3300035695 Bacteria 1825
65 Ga0373937_0149814 3300036401 Bacteria 2185
66 Ga0316582_0025962 3300036647 Bacteria 3522
67 Ga0316584_0011101 3300036712 Bacteria 6317
68 Ga0395898_0028525 3300037466 Bacteria 5592
69 Ga0400490_47052 3300038726 Bacteria 28584
70 Ga0400490_57897 3300038726 Bacteria 51598
71 Ga0400491_29475 3300038727 Bacteria 3666
72 Ga0400488_39676 3300038741 Bacteria 3344
73 Ga0400488_60427 3300038741 Bacteria 3748
74 Ga0400483_075393 3300039062 Bacteria 14325
75 Ga0400483_110853 3300039062 Bacteria 3852
76 Ga0400487_07629 3300039110 Bacteria 1748
77 Ga0400487_36334 3300039110 Bacteria 56401
78 Ga0400487_58400 3300039110 Bacteria 2480
79 Ga0436363_0117506 3300039450 Bacteria 7799
80 Ga0436362_0751592 3300039453 Bacteria 4345
81 Ga0439466_0016922 3300041411 Bacteria 2630
82 Ga0453684_0033292 3300044712 Bacteria 7188
83 Ga0453684_0226722 3300044712 Bacteria 2160
84 Ga0466960_0091134 3300044901 Bacteria 1554
85 Ga0451576_0000006 3300045051 Bacteria 949698
86 Ga0495630_0031456 3300046517 Bacteria 3952
87 Ga0495586_0055852 3300046535 Bacteria 2140
88 Ga0496100_0071674 3300048903 Bacteria 2314
89 Ga0496104_0014145 3300048907 Bacteria 7202
90 Ga0496108_0121733 3300048911 Bacteria 2238
91 Ga0496110_0009323 3300048913 Bacteria 7941
92 Ga0496111_0035178 3300048914 Bacteria 3578
93 Ga0496117_0000085 3300048920 Bacteria 213887
94 Ga0496121_0256089 3300048924 Bacteria 1211
95 Ga0496122_0000879 3300048925 Bacteria 56300
96 Ga0496123_0000676 3300048926 Bacteria 56312
97 Ga0501034_0108891 3300049571 Bacteria 2762
98 Ga0500583_0003168 3300053092 Bacteria 5113
99 Ga0500583_0008639 3300053092 Bacteria 3670
100 Ga0500556_0000549 3300053104 Bacteria 25200

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300039110 Ga0400487_58400 Ga0400487_58400_1374_2453 359
2 3300048924 Ga0496121_0256089 Ga0496121_0256089_83_1177 359
3 3300038726 Ga0400490_57897 Ga0400490_57897_35304_36518 373
4 3300025893 Ga0207682_10025495 Ga0207682_100254953 374
5 3300044712 Ga0453684_0226722 Ga0453684_0226722_381_1721 385
6 3300031251 Ga0265327_10020185 Ga0265327_100201853 391
7 3300039110 Ga0400487_07629 Ga0400487_07629_169_1383 404
8 3300030733 Ga0314311_1030261 Ga0314311_10302612 405
9 3300035695 Ga0373927_0106625 Ga0373927_0106625_353_1711 410
10 3300036401 Ga0373937_0149814 Ga0373937_0149814_805_2163 410
11 3300005339 Ga0070660_100002708 Ga0070660_1000027089 413
12 3300031824 Ga0307413_10000264 Ga0307413_1000026413 416
13 3300032004 Ga0307414_10011703 Ga0307414_100117035 417
14 3300005367 Ga0070667_100025585 Ga0070667_1000255852 420
15 3300005548 Ga0070665_100038682 Ga0070665_1000386824 420
16 3300005618 Ga0068864_100033345 Ga0068864_1000333453 420
17 3300005841 Ga0068863_100032386 Ga0068863_1000323862 420
18 3300005843 Ga0068860_100007598 Ga0068860_1000075988 420
19 3300006237 Ga0097621_100032948 Ga0097621_1000329484 420
20 3300009098 Ga0105245_10010456 Ga0105245_100104564 420
21 3300013296 Ga0157374_10010322 Ga0157374_100103227 420
22 3300013297 Ga0157378_10075252 Ga0157378_100752523 420
23 3300014325 Ga0163163_10050419 Ga0163163_100504194 420
24 3300025934 Ga0207686_10065984 Ga0207686_100659842 420
25 3300026035 Ga0207703_10005910 Ga0207703_100059107 420
26 3300026095 Ga0207676_10004673 Ga0207676_100046736 420
27 3300048903 Ga0496100_0071674 Ga0496100_0071674_618_1976 420
28 3300048907 Ga0496104_0014145 Ga0496104_0014145_270_1628 420
29 3300048911 Ga0496108_0121733 Ga0496108_0121733_563_1921 420
30 3300048913 Ga0496110_0009323 Ga0496110_0009323_1181_2539 420
31 3300048914 Ga0496111_0035178 Ga0496111_0035178_1489_2847 420
32 iso_pu_bacteria 2898795034 2898799183 422
33 3300035692 Ga0373935_0007355 Ga0373935_0007355_4179_5609 423
34 3300038741 Ga0400488_60427 Ga0400488_60427_861_2207 424
35 3300039110 Ga0400487_36334 Ga0400487_36334_13061_14407 424
36 3300009093 Ga0105240_10000088 Ga0105240_100000887 427
37 3300025913 Ga0207695_10000755 Ga0207695_1000075552 427
38 3300009093 Ga0105240_10033559 Ga0105240_100335598 429
39 3300053104 Ga0500556_0000549 Ga0500556_0000549_23258_24547 429
40 3300046517 Ga0495630_0031456 Ga0495630_0031456_249_1589 430
41 3300046535 Ga0495586_0055852 Ga0495586_0055852_559_1899 430
42 3300044901 Ga0466960_0091134 Ga0466960_0091134_227_1525 432
43 3300027512 Ga0209179_1000011 Ga0209179_10000118 434
44 3300048925 Ga0496122_0000879 Ga0496122_0000879_48947_50296 434
45 3300048926 Ga0496123_0000676 Ga0496123_0000676_48947_50296 434
46 3300031235 Ga0265330_10028251 Ga0265330_100282512 435
47 3300031665 Ga0316575_10041490 Ga0316575_100414901 435
48 3300035398 Ga0316574_0003046 Ga0316574_0003046_2127_3482 442
49 iso_pu_bacteria 2989392574 2989394993 442
50 3300048920 Ga0496117_0000085 Ga0496117_0000085_9563_10900 443
51 3300031250 Ga0265331_10012704 Ga0265331_100127044 444
52 3300045051 Ga0451576_0000006 Ga0451576_0000006_593000_594343 445
53 3300031691 Ga0316579_10012932 Ga0316579_100129322 446
54 3300044712 Ga0453684_0033292 Ga0453684_0033292_5206_6549 447
55 iso_pu_bacteria 2808606379 2808940329 447
56 3300032139 Ga0316580_10022354 Ga0316580_100223541 448
57 3300038726 Ga0400490_47052 Ga0400490_47052_13916_15262 448
58 3300038727 Ga0400491_29475 Ga0400491_29475_1854_3200 448
59 3300038741 Ga0400488_39676 Ga0400488_39676_457_1803 448
60 3300039062 Ga0400483_075393 Ga0400483_075393_8975_10321 448
61 3300005844 Ga0068862_100178757 Ga0068862_1001787572 449
62 3300006844 Ga0075428_100013809 Ga0075428_1000138097 449
63 3300014326 Ga0157380_10073713 Ga0157380_100737132 449
64 3300028380 Ga0268265_10076906 Ga0268265_100769062 449
65 3300031665 Ga0316575_10024400 Ga0316575_100244002 449
66 3300031691 Ga0316579_10002419 Ga0316579_100024192 449
67 3300031728 Ga0316578_10004449 Ga0316578_100044492 449
68 3300031733 Ga0316577_10015050 Ga0316577_100150502 449
69 3300035398 Ga0316574_0011338 Ga0316574_0011338_644_1996 449
70 3300036647 Ga0316582_0025962 Ga0316582_0025962_1010_2374 449
71 3300036712 Ga0316584_0011101 Ga0316584_0011101_951_2315 449
72 3300039062 Ga0400483_110853 Ga0400483_110853_1230_2591 449
73 3300005336 Ga0070680_100127749 Ga0070680_1001277492 450
74 3300005458 Ga0070681_10001254 Ga0070681_1000125420 450
75 3300005458 Ga0070681_10007381 Ga0070681_1000738110 450
76 3300005458 Ga0070681_10045521 Ga0070681_100455212 450
77 3300005530 Ga0070679_100033796 Ga0070679_1000337962 450
78 3300005530 Ga0070679_100037832 Ga0070679_1000378322 450
79 3300005719 Ga0068861_100014812 Ga0068861_1000148122 450
80 3300005937 Ga0081455_10055658 Ga0081455_100556582 450
81 3300005985 Ga0081539_10000007 Ga0081539_10000007108 450
82 3300009553 Ga0105249_10061644 Ga0105249_100616441 450
83 3300013105 Ga0157369_10027891 Ga0157369_100278916 450
84 3300013105 Ga0157369_10045500 Ga0157369_100455005 450
85 3300013307 Ga0157372_10441560 Ga0157372_104415601 450
86 3300014326 Ga0157380_10200429 Ga0157380_102004292 450
87 3300025912 Ga0207707_10014745 Ga0207707_100147455 450
88 3300025912 Ga0207707_10080755 Ga0207707_100807552 450
89 3300025917 Ga0207660_10021999 Ga0207660_100219994 450
90 3300025921 Ga0207652_10021848 Ga0207652_100218483 450
91 3300025921 Ga0207652_10151176 Ga0207652_101511762 450
92 3300026118 Ga0207675_100056961 Ga0207675_1000569613 450
93 3300028794 Ga0307515_10035494 Ga0307515_100354943 450
94 3300030521 Ga0307511_10001773 Ga0307511_100017735 450
95 3300031507 Ga0307509_10000008 Ga0307509_1000000866 450
96 3300031824 Ga0307413_10100727 Ga0307413_101007272 450
97 3300037466 Ga0395898_0028525 Ga0395898_0028525_2959_4311 450
98 3300039450 Ga0436363_0117506 Ga0436363_0117506_5031_6467 450
99 3300039453 Ga0436362_0751592 Ga0436362_0751592_131_1483 450
100 3300041411 Ga0439466_0016922 Ga0439466_0016922_936_2303 450
101 3300049571 Ga0501034_0108891 Ga0501034_0108891_1059_2426 450
102 3300053092 Ga0500583_0003168 Ga0500583_0003168_3180_4532 450
103 3300053092 Ga0500583_0008639 Ga0500583_0008639_160_1512 450

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12631

MnmE_helical

MnmE helical domain

150

475

0.98

PF10396

TrmE_N

GTP-binding protein TrmE N-terminus

34

147

0.94

PF02421

FeoB_N

Ferrous iron transport protein B

244

365

0.91

PF01926

MMR_HSR1

50S ribosome-binding GTPase

245

360

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
1xzq-assembly1.cif.gz_B structure of the gtp-binding protein trme from thermotoga maritima complexed with 5-formyl-thf 0.9367 5 117
1xzp-assembly1.cif.gz_B structure of the gtp-binding protein trme from thermotoga maritima 0.9339 5 120
1xzq-assembly1.cif.gz_B structure of the gtp-binding protein trme from thermotoga maritima complexed with 5-formyl-thf 0.8982 5 117
3gei-assembly2.cif.gz_C crystal structure of mnme from chlorobium tepidum in complex with gcp 0.8432 5 450
2gja-assembly1.cif.gz_A structure of the mnme g-domain in complex with gdp*alf4-, mg2+ and nh4+ 0.8429 216 377
ID Description Score Start End Superfamily
af_P25522_1_121_3.30.1360.120 Alpha Beta;2-Layer Sandwich;Gyrase A; domain 2;Probable tRNA modification gtpase trme; domain 1 0.9705 1 120 3.30.1360.120
af_Q923K4_29_152_3.30.1360.120 Alpha Beta;2-Layer Sandwich;Gyrase A; domain 2;Probable tRNA modification gtpase trme; domain 1 0.9704 5 118 3.30.1360.120
af_Q9UTE7_14_142_3.30.1360.120 Alpha Beta;2-Layer Sandwich;Gyrase A; domain 2;Probable tRNA modification gtpase trme; domain 1 0.9669 5 118 3.30.1360.120
af_P25522_1_121_3.30.1360.120 Alpha Beta;2-Layer Sandwich;Gyrase A; domain 2;Probable tRNA modification gtpase trme; domain 1 0.9548 1 120 3.30.1360.120
af_I1JVH7_75_204_3.30.1360.120 Alpha Beta;2-Layer Sandwich;Gyrase A; domain 2;Probable tRNA modification gtpase trme; domain 1 0.9456 5 117 3.30.1360.120
ID Description Score Start End GO Terms
AF-A0A099DBP5-F1-model_v4 deleted 0.9925 17 158
AF-A0A661DE51-F1-model_v4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.9865 5 112 GO:0002098
GO:0005525
GO:0005829
GO:0030488
AF-A0A523P3F8-F1-model_v4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.9852 5 153 GO:0002098
GO:0005525
GO:0005829
GO:0030488
AF-A0A521Y2T2-F1-model_v4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.9848 5 170 GO:0002098
GO:0005525
GO:0005829
GO:0030488
AF-A0A014DS15-F1-model_v4 deleted 0.9828 5 141

Feature Viewer

pLDDT pTM Quality
83.99 0.77 High
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Predicted Structure (AlphaFold2)

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