F027889

General Info

Members Datasets Scaffolds Average Seq Length
104 44 208 172

Family's Representative Sequence

Representative Sequence 3300042876|Ga0451577_0014243|Ga0451577_0014243_5302_5874
Length 190
Sequence MNLSEGYLKIALSSLAVYLFIIIAIRLFGKKELAQLSIIDLVFILLISNSVQNAMVGSDSSLSGGLVAATTLFMANYLLKYLLYRFPKFSTVVQGNDLMLIYKGQLNEANLTKARITREELLEAVREHGVSEIREVDLAVLETDGNISIISNEYKHHTVRKRKGRNKAMKSQYRFGNRQDELIEPKTVSD

Samples

Sample ID Description Type Environment
1 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
2 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
3 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
4 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
5 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
6 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
7 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
8 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
9 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
10 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
11 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
12 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
13 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
14 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
15 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
16 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
17 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
18 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
19 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
20 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
21 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
25 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
26 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
29 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
30 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
31 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
32 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
33 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
34 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
35 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
36 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
37 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
38 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
39 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
40 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
41 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
42 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
43 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
44 2910245624 Adhaeribacter radiodurans KUDC8001 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.04
Metatranscriptomes 0
Isolates 0.96

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.92
Nodule 0
Rhizoplane 0
Rhizosphere 98.08
Stem 0
Stem Tuber 0
Unclassified 16.35

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0451577_0014243 3300042876 Bacteria 7413
2 Ga0070676_10068191 3300005328 Bacteria 2129
3 Ga0070689_100134552 3300005340 Bacteria 1984
4 Ga0070689_100371581 3300005340 Bacteria 1203
5 Ga0070667_101226167 3300005367 Bacteria 702
6 Ga0068867_100027561 3300005459 Bacteria 4084
7 Ga0070685_10067273 3300005466 Bacteria 2113
8 Ga0070679_100012725 3300005530 Bacteria 8047
9 Ga0068855_100257162 3300005563 Bacteria 1946
10 Ga0068855_101647504 3300005563 Bacteria 655
11 Ga0068856_101529666 3300005614 Unclassified 681
12 Ga0068859_100000408 3300005617 Bacteria 42690
13 Ga0068859_100225056 3300005617 Bacteria 1964
14 Ga0070715_10070055 3300006163 Unclassified 1564
15 Ga0068871_100661788 3300006358 Bacteria 954
16 Ga0068865_100456687 3300006881 Bacteria 1057
17 Ga0097620_100000408 3300006931 Bacteria 42690
18 Ga0097620_100225056 3300006931 Bacteria 1964
19 Ga0105240_10049479 3300009093 Bacteria 5304
20 Ga0105240_10055637 3300009093 Bacteria 4953
21 Ga0105240_11136149 3300009093 Bacteria 830
22 Ga0105245_10359717 3300009098 Bacteria 1444
23 Ga0105242_10089516 3300009176 Bacteria 2587
24 Ga0157378_10248466 3300013297 Bacteria 1702
25 Ga0157378_10492381 3300013297 Bacteria 1223
26 Ga0157379_10743877 3300014968 Unclassified 923
27 Ga0207645_10352416 3300025907 Bacteria 985
28 Ga0207695_10304061 3300025913 Unclassified 1486
29 Ga0207652_10726212 3300025921 Bacteria 885
30 Ga0207670_10384648 3300025936 Bacteria 1118
31 Ga0207670_10450263 3300025936 Bacteria 1038
32 Ga0207667_10050189 3300025949 Bacteria 4403
33 Ga0207702_10368235 3300026078 Unclassified 1379
34 Ga0207648_10419037 3300026089 Bacteria 1216
35 Ga0268264_10082579 3300028381 Unclassified 2750
36 Ga0265319_1070708 3300028563 Bacteria 1119
37 Ga0265334_10127563 3300028573 Bacteria 907
38 Ga0265318_10096150 3300028577 Bacteria 1090
39 Ga0265336_10099180 3300028666 Bacteria 868
40 Ga0265336_10113272 3300028666 Bacteria 808
41 Ga0265338_10007345 3300028800 Bacteria 13727
42 Ga0265338_10020076 3300028800 Bacteria 7046
43 Ga0265338_10151295 3300028800 Bacteria 1803
44 Ga0265324_10043333 3300029957 Bacteria 1553
45 Ga0265324_10054031 3300029957 Bacteria 1379
46 Ga0265330_10199684 3300031235 Unclassified 846
47 Ga0265320_10008360 3300031240 Bacteria 6337
48 Ga0265320_10111298 3300031240 Unclassified 1254
49 Ga0265327_10000013 3300031251 Bacteria 519549
50 Ga0265327_10072144 3300031251 Bacteria 1725
51 Ga0265327_10086389 3300031251 Bacteria 1539
52 Ga0265327_10226121 3300031251 Unclassified 840
53 Ga0316578_10030250 3300031728 Unclassified 3077
54 Ga0316583_10055477 3300032133 Bacteria 1393
55 Ga0316582_0014414 3300036647 Unclassified 4485
56 Ga0451577_0000072 3300042876 Bacteria 237934
57 Ga0451577_0001398 3300042876 Bacteria 32345
58 Ga0451577_0004160 3300042876 Bacteria 15499
59 Ga0451577_0016718 3300042876 Bacteria 6784
60 Ga0451577_0175779 3300042876 Unclassified 1930
61 Ga0451577_0277528 3300042876 Bacteria 1518
62 Ga0451577_0368631 3300042876 Bacteria 1303
63 Ga0451577_0429198 3300042876 Bacteria 1200
64 Ga0451577_0432143 3300042876 Bacteria 1195
65 Ga0451577_1629927 3300042876 Unclassified 569
66 Ga0453683_0000004 3300044673 Bacteria 759456
67 Ga0453683_0000604 3300044673 Bacteria 39525
68 Ga0453683_0003496 3300044673 Bacteria 11557
69 Ga0453683_0004597 3300044673 Bacteria 9755
70 Ga0453683_0015296 3300044673 Bacteria 4970
71 Ga0453683_0057031 3300044673 Bacteria 2444
72 Ga0453683_0244372 3300044673 Bacteria 1143
73 Ga0453683_0254941 3300044673 Bacteria 1118
74 Ga0453683_0431277 3300044673 Unclassified 851
75 Ga0453684_0000181 3300044712 Bacteria 279183
76 Ga0453684_0000186 3300044712 Bacteria 273302
77 Ga0453684_0002968 3300044712 Bacteria 39656
78 Ga0453684_0004100 3300044712 Bacteria 31606
79 Ga0453684_0011027 3300044712 Bacteria 15266
80 Ga0453684_0032943 3300044712 Bacteria 7236
81 Ga0453684_0039444 3300044712 Bacteria 6436
82 Ga0453684_0042102 3300044712 Bacteria 6163
83 Ga0453684_0043221 3300044712 Bacteria 6061
84 Ga0453684_0057341 3300044712 Bacteria 5042
85 Ga0453684_0095663 3300044712 Bacteria 3650
86 Ga0453684_0105236 3300044712 Bacteria 3442
87 Ga0453684_0161985 3300044712 Bacteria 2645
88 Ga0453684_0230558 3300044712 Bacteria 2138
89 Ga0453684_0338234 3300044712 Bacteria 1700
90 Ga0453684_0477563 3300044712 Bacteria 1383
91 Ga0453684_1078382 3300044712 Bacteria 850
92 Ga0453684_1788729 3300044712 Unclassified 625
93 Ga0451576_0000005 3300045051 Bacteria 1294643
94 Ga0451576_0000065 3300045051 Bacteria 274445
95 Ga0451576_0001993 3300045051 Bacteria 32352
96 Ga0451576_0017655 3300045051 Bacteria 7841
97 Ga0451576_0031098 3300045051 Bacteria 5695
98 Ga0451576_0150813 3300045051 Bacteria 2424
99 Ga0451576_0823438 3300045051 Unclassified 975
100 Ga0451576_0829195 3300045051 Bacteria 971
101 Ga0451576_1966447 3300045051 Unclassified 603
102 Ga0500616_0007559 3300053153 Bacteria 6879
103 Ga0500616_0216949 3300053153 Bacteria 837
104 2910250250 2910245624 Bacteria 6935613
105 Ga0451577_0014243
106 Ga0070676_10068191
107 Ga0070689_100134552
108 Ga0070689_100371581
109 Ga0070667_101226167
110 Ga0068867_100027561
111 Ga0070685_10067273
112 Ga0070679_100012725
113 Ga0068855_100257162
114 Ga0068855_101647504
115 Ga0068856_101529666
116 Ga0068859_100000408
117 Ga0068859_100225056
118 Ga0070715_10070055
119 Ga0068871_100661788
120 Ga0068865_100456687
121 Ga0097620_100000408
122 Ga0097620_100225056
123 Ga0105240_10049479
124 Ga0105240_10055637
125 Ga0105240_11136149
126 Ga0105245_10359717
127 Ga0105242_10089516
128 Ga0157378_10248466
129 Ga0157378_10492381
130 Ga0157379_10743877
131 Ga0207645_10352416
132 Ga0207695_10304061
133 Ga0207652_10726212
134 Ga0207670_10384648
135 Ga0207670_10450263
136 Ga0207667_10050189
137 Ga0207702_10368235
138 Ga0207648_10419037
139 Ga0268264_10082579
140 Ga0265319_1070708
141 Ga0265334_10127563
142 Ga0265318_10096150
143 Ga0265336_10099180
144 Ga0265336_10113272
145 Ga0265338_10007345
146 Ga0265338_10020076
147 Ga0265338_10151295
148 Ga0265324_10043333
149 Ga0265324_10054031
150 Ga0265330_10199684
151 Ga0265320_10008360
152 Ga0265320_10111298
153 Ga0265327_10000013
154 Ga0265327_10072144
155 Ga0265327_10086389
156 Ga0265327_10226121
157 Ga0316578_10030250
158 Ga0316583_10055477
159 Ga0316582_0014414
160 Ga0451577_0000072
161 Ga0451577_0001398
162 Ga0451577_0004160
163 Ga0451577_0016718
164 Ga0451577_0175779
165 Ga0451577_0277528
166 Ga0451577_0368631
167 Ga0451577_0429198
168 Ga0451577_0432143
169 Ga0451577_1629927
170 Ga0453683_0000004
171 Ga0453683_0000604
172 Ga0453683_0003496
173 Ga0453683_0004597
174 Ga0453683_0015296
175 Ga0453683_0057031
176 Ga0453683_0244372
177 Ga0453683_0254941
178 Ga0453683_0431277
179 Ga0453684_0000181
180 Ga0453684_0000186
181 Ga0453684_0002968
182 Ga0453684_0004100
183 Ga0453684_0011027
184 Ga0453684_0032943
185 Ga0453684_0039444
186 Ga0453684_0042102
187 Ga0453684_0043221
188 Ga0453684_0057341
189 Ga0453684_0095663
190 Ga0453684_0105236
191 Ga0453684_0161985
192 Ga0453684_0230558
193 Ga0453684_0338234
194 Ga0453684_0477563
195 Ga0453684_1078382
196 Ga0453684_1788729
197 Ga0451576_0000005
198 Ga0451576_0000065
199 Ga0451576_0001993
200 Ga0451576_0017655
201 Ga0451576_0031098
202 Ga0451576_0150813
203 Ga0451576_0823438
204 Ga0451576_0829195
205 Ga0451576_1966447
206 Ga0500616_0007559
207 Ga0500616_0216949
208 2910250250

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04239

DUF421

YetF C-terminal domain

84

175

0.88

Map