F040223

General Info

Members Datasets Scaffolds Average Seq Length
106 71 212 782

Family's Representative Sequence

Representative Sequence 3300049665|Ga0501227_000729|Ga0501227_000729_2067_4613
Length 848
Sequence MNAATAHSTTITYDDRSVRQFMIASIVWGIVGMLVGVICATQLSWWQMNGKFLETITFGLFKGEGLQYLTFGRLRPLHTNAVVFAFVGNMAFAGIYYSTQRLCKVRTASDLLSKIHMWGWQLIILAAAITLPAGLTRGKEYAELIWPINIAVAVVWVVFAINFFWTLAKRNEPSLYVALWFYIATIVTVAMLYIVNHLSIPTSWIHSYPIFGGLQDGLVQWWYGHNAVAFFLTTPILGIMYYFLPKAANRPVYSYRLSIIHFWSLVFIYIWAGPHHLLNTSLPRWLQMLGMLFSLMLWAPSWGGMLNGLLTLRGAWAKLRTDPVIKFFAAGITFYGMATFEGPLLSIRAVNQLSHYTDWTIGHVHAGALGWNGFMAAGMFYWLAPKLWRTRLWSQSLANMHFWVGLVGILLYVAAMWTAGIMQGLMLGEVAEGGTTLKYEFVETLKAIQLTYILRSIGGTLYLIGFIICAVNIFKTARSGSAVDESVQVNIPAKDHDRMRFGEALLNDPVAYAVLGITAVILWFFLPPHADKAALLAAVILTVKAAKTFKRDGLSWDMWHESLLRNYLPFTLLVFIAVAIGGTVQIVPSLLVNREKNIEGRLQELYTPLELAGRDLYVSEGCYNCHSQMIRTLMPDVMRYGRAGVKDDFSHLGESLYDHPYQWGSKRTGPDLAREGGPLVSGSTHLRAGKRDNKWHWFHFQNPRWASEDSNMPPYPWLFEQKTDFKSLPTKIAVQRRLGVPFPAWTKDQIDQQAREQGMAIARSLFEGNAPVGYEPMKDKSTEELVRYFSESQVVSLIAYIQKLGTYREIDKDGPPVPTPLDPDSYRKLTQRSKDFLEGKTTSATDEK

Samples

Sample ID Description Type Environment
1 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
2 3300001977 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5 Metagenome Rhizosphere
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
7 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
8 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
9 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
10 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
11 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
12 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
13 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
14 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
15 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
16 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
17 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
18 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
19 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
20 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
21 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
24 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
25 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
26 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
28 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
29 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
30 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
31 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
32 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
33 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
34 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
35 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
36 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
37 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
38 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
39 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
40 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
41 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
42 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
43 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
44 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
45 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
46 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
47 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
48 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
49 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
50 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
51 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
52 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
53 3300042127 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030F_E14_070516_91 Metagenome Rhizosphere
54 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
55 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
56 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
57 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
58 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
59 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
60 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
61 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
62 3300049161 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I2_A_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
63 3300049528 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
64 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
65 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
66 3300049675 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_A_3_control Metagenome Rhizosphere
67 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
68 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
69 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
70 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
71 2786546940 Opitutaceae bacterium EW11 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 97.17
Metatranscriptomes 1.89
Isolates 0.94

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.94
Nodule 0
Rhizoplane 0.94
Rhizosphere 95.28
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501227_000729 3300049665 Bacteria 7159
2 JGI24746J21847_1001910 3300001977 Bacteria 3321
3 rootH2_10027058 3300003320 Bacteria 20886
4 Ga0070658_10032674 3300005327 Bacteria 4184
5 Ga0070683_100021505 3300005329 Bacteria 5758
6 Ga0068869_100002902 3300005334 Bacteria 10414
7 Ga0070661_100001253 3300005344 Bacteria 17808
8 Ga0068867_100000201 3300005459 Bacteria 39602
9 Ga0068853_100000057 3300005539 Bacteria 79269
10 Ga0070664_100000239 3300005564 Bacteria 39417
11 Ga0068856_100001578 3300005614 Bacteria 23860
12 Ga0068856_100041597 3300005614 Bacteria 4517
13 Ga0068860_100000378 3300005843 Bacteria 58295
14 Ga0068860_100083780 3300005843 Bacteria 3033
15 Ga0068871_100005187 3300006358 Bacteria 9105
16 Ga0105240_10000022 3300009093 Bacteria 387911
17 Ga0105243_10000139 3300009148 Bacteria 83070
18 Ga0105239_10052361 3300010375 Bacteria 4477
19 Ga0157376_10001373 3300014969 Bacteria 16029
20 Ga0207695_10000022 3300025913 Bacteria 659090
21 Ga0207709_10000185 3300025935 Bacteria 83062
22 Ga0207704_10002933 3300025938 Bacteria 7699
23 Ga0207689_10003846 3300025942 Bacteria 13690
24 Ga0207679_10002899 3300025945 Bacteria 10639
25 Ga0207639_10000021 3300026041 Bacteria 233661
26 Ga0207702_10002386 3300026078 Bacteria 17902
27 Ga0207702_10023357 3300026078 Bacteria 5128
28 Ga0207702_10038198 3300026078 Bacteria 4021
29 Ga0207648_10000625 3300026089 Bacteria 39653
30 Ga0268264_10000426 3300028381 Bacteria 58410
31 Ga0268264_10037777 3300028381 Bacteria 3983
32 Ga0265337_1002630 3300028556 Bacteria 8097
33 Ga0265319_1000011 3300028563 Bacteria 184643
34 Ga0265319_1002079 3300028563 Bacteria 11228
35 Ga0265318_10000088 3300028577 Bacteria 82498
36 Ga0265318_10000124 3300028577 Bacteria 71647
37 Ga0265318_10001016 3300028577 Bacteria 17932
38 Ga0265318_10004894 3300028577 Bacteria 6390
39 Ga0265322_10006034 3300028654 Bacteria 3571
40 Ga0265336_10000834 3300028666 Bacteria 16059
41 Ga0265338_10000259 3300028800 Bacteria 96351
42 Ga0265338_10006275 3300028800 Bacteria 15205
43 Ga0265338_10009149 3300028800 Bacteria 11888
44 Ga0265324_10008101 3300029957 Bacteria 4206
45 Ga0265320_10000046 3300031240 Bacteria 119672
46 Ga0265320_10000756 3300031240 Bacteria 24828
47 Ga0265320_10001391 3300031240 Bacteria 17599
48 Ga0265320_10002593 3300031240 Bacteria 12550
49 Ga0265320_10006056 3300031240 Bacteria 7674
50 Ga0265331_10008415 3300031250 Bacteria 5869
51 Ga0265327_10000047 3300031251 Bacteria 273466
52 Ga0265327_10000157 3300031251 Bacteria 146060
53 Ga0265327_10000351 3300031251 Bacteria 87732
54 Ga0265327_10000849 3300031251 Bacteria 45660
55 Ga0265327_10004798 3300031251 Bacteria 11745
56 Ga0265316_10009985 3300031344 Bacteria 8687
57 Ga0307408_100000007 3300031548 Bacteria 463086
58 Ga0307408_100000041 3300031548 Bacteria 172998
59 Ga0265313_10001528 3300031595 Bacteria 21520
60 Ga0265313_10001567 3300031595 Bacteria 21213
61 Ga0265313_10004288 3300031595 Bacteria 11039
62 Ga0265313_10010990 3300031595 Bacteria 5661
63 Ga0307508_10000024 3300031616 Bacteria 176806
64 Ga0265314_10004691 3300031711 Bacteria 12550
65 Ga0265314_10006092 3300031711 Bacteria 10716
66 Ga0265314_10035981 3300031711 Bacteria 3603
67 Ga0265342_10017338 3300031712 Bacteria 4687
68 Ga0316576_10002709 3300031727 Bacteria 10138
69 Ga0307410_10000036 3300031852 Bacteria 48225
70 Ga0307406_10005279 3300031901 Bacteria 7064
71 Ga0307407_10000116 3300031903 Bacteria 25705
72 Ga0307412_10000013 3300031911 Bacteria 365239
73 Ga0307409_100000294 3300031995 Bacteria 20206
74 Ga0307416_100000065 3300032002 Bacteria 94719
75 Ga0307414_10000007 3300032004 Bacteria 407977
76 Ga0316574_0037626 3300035398 Bacteria 2968
77 Ga0395905_0000013 3300037471 Bacteria 400797
78 Ga0395905_0000250 3300037471 Bacteria 80488
79 Ga0450890_000020 3300042127 Bacteria 45524
80 Ga0451577_0000025 3300042876 Bacteria 403632
81 Ga0451577_0009520 3300042876 Bacteria 9348
82 Ga0451577_0028086 3300042876 Bacteria 5090
83 Ga0453683_0004289 3300044673 Bacteria 10171
84 Ga0453683_0024433 3300044673 Bacteria 3845
85 Ga0453684_0000001 3300044712 Bacteria 2623166
86 Ga0453684_0012671 3300044712 Bacteria 13855
87 Ga0453684_0045960 3300044712 Bacteria 5816
88 Ga0453684_0049639 3300044712 Bacteria 5530
89 Ga0453684_0079943 3300044712 Bacteria 4085
90 Ga0451576_0008279 3300045051 Bacteria 12223
91 Ga0451576_0008940 3300045051 Bacteria 11684
92 Ga0451576_0043758 3300045051 Bacteria 4723
93 Ga0495643_0000274 3300046522 Bacteria 73616
94 Ga0495656_0000006 3300046615 Bacteria 237497
95 Ga0495658_0023913 3300046683 Bacteria 3249
96 Ga0496112_0021652 3300048915 Bacteria 6115
97 Ga0501305_000305 3300049161 Bacteria 3822
98 Ga0501312_000218 3300049528 Bacteria 4020
99 Ga0501046_0000114 3300049580 Bacteria 84468
100 Ga0501073_0008461 3300049589 Bacteria 7630
101 Ga0501243_000036 3300049675 Bacteria 11897
102 Ga0501080_0028467 3300049742 Bacteria 5198
103 Ga0501083_0006819 3300049744 Bacteria 8108
104 Ga0501035_0057795 3300049822 Bacteria 3458
105 Ga0500559_0002347 3300053136 Bacteria 9891
106 2788434472 2786546940 Bacteria 6396474
107 Ga0501227_000729
108 JGI24746J21847_1001910
109 rootH2_10027058
110 Ga0070658_10032674
111 Ga0070683_100021505
112 Ga0068869_100002902
113 Ga0070661_100001253
114 Ga0068867_100000201
115 Ga0068853_100000057
116 Ga0070664_100000239
117 Ga0068856_100001578
118 Ga0068856_100041597
119 Ga0068860_100000378
120 Ga0068860_100083780
121 Ga0068871_100005187
122 Ga0105240_10000022
123 Ga0105243_10000139
124 Ga0105239_10052361
125 Ga0157376_10001373
126 Ga0207695_10000022
127 Ga0207709_10000185
128 Ga0207704_10002933
129 Ga0207689_10003846
130 Ga0207679_10002899
131 Ga0207639_10000021
132 Ga0207702_10002386
133 Ga0207702_10023357
134 Ga0207702_10038198
135 Ga0207648_10000625
136 Ga0268264_10000426
137 Ga0268264_10037777
138 Ga0265337_1002630
139 Ga0265319_1000011
140 Ga0265319_1002079
141 Ga0265318_10000088
142 Ga0265318_10000124
143 Ga0265318_10001016
144 Ga0265318_10004894
145 Ga0265322_10006034
146 Ga0265336_10000834
147 Ga0265338_10000259
148 Ga0265338_10006275
149 Ga0265338_10009149
150 Ga0265324_10008101
151 Ga0265320_10000046
152 Ga0265320_10000756
153 Ga0265320_10001391
154 Ga0265320_10002593
155 Ga0265320_10006056
156 Ga0265331_10008415
157 Ga0265327_10000047
158 Ga0265327_10000157
159 Ga0265327_10000351
160 Ga0265327_10000849
161 Ga0265327_10004798
162 Ga0265316_10009985
163 Ga0307408_100000007
164 Ga0307408_100000041
165 Ga0265313_10001528
166 Ga0265313_10001567
167 Ga0265313_10004288
168 Ga0265313_10010990
169 Ga0307508_10000024
170 Ga0265314_10004691
171 Ga0265314_10006092
172 Ga0265314_10035981
173 Ga0265342_10017338
174 Ga0316576_10002709
175 Ga0307410_10000036
176 Ga0307406_10005279
177 Ga0307407_10000116
178 Ga0307412_10000013
179 Ga0307409_100000294
180 Ga0307416_100000065
181 Ga0307414_10000007
182 Ga0316574_0037626
183 Ga0395905_0000013
184 Ga0395905_0000250
185 Ga0450890_000020
186 Ga0451577_0000025
187 Ga0451577_0009520
188 Ga0451577_0028086
189 Ga0453683_0004289
190 Ga0453683_0024433
191 Ga0453684_0000001
192 Ga0453684_0012671
193 Ga0453684_0045960
194 Ga0453684_0049639
195 Ga0453684_0079943
196 Ga0451576_0008279
197 Ga0451576_0008940
198 Ga0451576_0043758
199 Ga0495643_0000274
200 Ga0495656_0000006
201 Ga0495658_0023913
202 Ga0496112_0021652
203 Ga0501305_000305
204 Ga0501312_000218
205 Ga0501046_0000114
206 Ga0501073_0008461
207 Ga0501243_000036
208 Ga0501080_0028467
209 Ga0501083_0006819
210 Ga0501035_0057795
211 Ga0500559_0002347
212 2788434472

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00115

COX1

Cytochrome C and Quinol oxidase polypeptide I

16

461

0.93

PF02433

FixO

Cytochrome C oxidase, mono-heme subunit/FixO

560

808

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
8snh-assembly1.cif.gz_E cytochrome bc1-cbb3 supercomplex from pseudomonas aeruginosa 0.9601 12 471
3mk7-assembly4.cif.gz_K the structure of cbb3 cytochrome oxidase 0.9541 12 475
6xkw-assembly1.cif.gz_n r. capsulatus ciii2civ bipartite super-complex (sc-2a) with ccoh/cy 0.9524 12 467
3mk7-assembly4.cif.gz_K the structure of cbb3 cytochrome oxidase 0.9421 12 475
8snh-assembly1.cif.gz_E cytochrome bc1-cbb3 supercomplex from pseudomonas aeruginosa 0.934 12 471
ID Description Score Start End Superfamily
5djqA00 Mainly Alpha;Up-down Bundle;Cytochrome C Oxidase; Chain A;Cytochrome c oxidase-like, subunit I domain 0.9543 12 473 1.20.210.10
5djqA00 Mainly Alpha;Up-down Bundle;Cytochrome C Oxidase; Chain A;Cytochrome c oxidase-like, subunit I domain 0.9363 12 473 1.20.210.10
3mk7E02 Mainly Alpha;Orthogonal Bundle;Cytochrome Bc1 Complex; Chain D, domain 2;Cytochrome c-like domain 0.888 593 795 1.10.760.10
3mk7E02 Mainly Alpha;Orthogonal Bundle;Cytochrome Bc1 Complex; Chain D, domain 2;Cytochrome c-like domain 0.8253 593 795 1.10.760.10
3aygA01 Mainly Alpha;Up-down Bundle;Cytochrome C Oxidase; Chain A;Cytochrome c oxidase-like, subunit I domain 0.7462 16 475 1.20.210.10
ID Description Score Start End GO Terms
AF-A0A258R6M5-F1-model_v4 Cytochrome C oxidase Cbb3 0.9875 292 469 GO:0004129
GO:0005886
GO:0006119
GO:0015990
GO:0020037
GO:0022904
AF-A0A3B9IKE6-F1-model_v4 Cytochrome oxidase 0.9868 299 416 GO:0004129
GO:0005886
GO:0006119
GO:0015990
GO:0020037
GO:0022904
AF-A0A259K6V1-F1-model_v4 deleted 0.9858 317 469
AF-W1I8C5-F1-model_v4 Cbb3-type cytochrome c oxidase subunit I CooN 0.9849 317 468 GO:0004129
GO:0005886
GO:0006119
GO:0015990
GO:0020037
GO:0022904
AF-A0A7S1E8E6-F1-model_v4 Cytochrome-c oxidase 0.9841 96 232 GO:0004129
GO:0009060
GO:0016020
GO:0020037

Map