F065288

General Info

Members Datasets Scaffolds Average Seq Length
111 82 222 606

Family's Representative Sequence

Representative Sequence 3300041460|Ga0451802_0799475|Ga0451802_0799475_17_2011
Length 664
Sequence MRLWNARSGRKRSDPLEFGGWTRLMPLIAATLLENPMRKTLIACALVLALGACDRAAAPDTAATGNAPAATVSQADIAAETERLNQWFEKKYEEQLRFSPLQLTFQGRKELYDQLDDMSEKSQIDQVAWQKASVEEMEKTFDYAKLSDEGKFSYDLWKLQYEDANAGLPFLADGYSFDQMNGAQSFLPTVLISFHKVDEESDYTAYVSRLKATARAFDQLLERARKSAGQGIRPPKFAYEGVIDQSRKVIAGAPFSAGKDSAIWADAQAKADALVKSGKIDAARAAALKEDARKALLEQFKPAYERVIAWCEEDLPKAAVDATGVGVTHPNGKAYYEYRLRLMTTTDMTAEQIHALGLKEVERIKGEMTALKDKFGFKGDLNAFFAFIDSDPQFNFPNTDAGRQAYIDEATRVIANIKKELPNYFGLLPKADLVVKRVEAFREQDGAAQHYYPGTPDGSRPGVYYAHLSDMSAMPKPELEVIAYHEGLPGHHMQISIAQELTGVPKFRTQAGFTAYQEGWGLYSEWLAKEMPNTYQDPYSEFGRLSSEMWRAIRLVVDTGLHAKGWTEEQAIKYFDDNSAVPLAAIRSEVRRYLIMPGQATAYKIGMIRIQELRRKAETELGDKFDIKGFHDTVLGGGALPLTLLEKRVTQWIASRKEETAAAK

Samples

Sample ID Description Type Environment
1 3300041460 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG Metagenome Rhizoplane
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
4 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
5 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
6 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
7 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
8 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
9 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
10 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
11 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
12 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
13 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
14 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
15 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
16 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
17 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
18 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
19 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
20 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
21 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
22 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
23 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
24 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
28 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
29 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
30 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
31 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
32 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
33 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
34 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
35 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
36 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
37 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
38 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
39 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
40 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
41 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
42 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
43 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
44 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
45 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
46 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
47 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
48 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
49 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
50 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
51 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
52 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
53 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
54 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
55 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
56 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
57 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
58 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
59 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
60 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
61 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
62 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
63 2582581279 Caulobacter henricii OK261 Isolate Rhizosphere
64 2643221560 Sphingopyxis sp. Root1497 Isolate Unclassified
65 2643221563 Sphingopyxis sp. Root154 Isolate Unclassified
66 2643221579 Pseudoxanthomonas sp. Root630 Isolate Unclassified
67 2643221581 Pseudoxanthomonas sp. Root65 Isolate Unclassified
68 2643221608 Sphingopyxis sp. Root214 Isolate Unclassified
69 2690315857 Rheinheimera sp. EpRS3 Isolate Unclassified
70 2894414249 Luteimonas sp. LNNU 24178 Isolate Rhizosphere
71 2895498888 Pseudoxanthomonas sp. SGD-10 Isolate Rhizosphere
72 2895511927 Pseudoxanthomonas sp. SGD-5-1 Isolate Rhizosphere
73 2895522137 Pseudoxanthomonas sp. SGNA-20 Isolate Rhizosphere
74 2895525241 Pseudoxanthomonas sp. SGT-18 Isolate Rhizosphere
75 2896253425 Aurantiacibacter rhizosphaerae GH3-10 Isolate Rhizosphere
76 2919513703 Luteimonas sp. 3794 Isolate Unclassified
77 2919534386 Rheinheimera pacifica 3879 Isolate Unclassified
78 2919675420 Luteimonas terrae 4099 Isolate Unclassified
79 2919688452 Pararheinheimera soli 4138 Isolate Unclassified
80 2923516293 Pseudoxanthomonas mexicana SLBN-89 Isolate Rhizosphere
81 8002869464 Pseudoxanthomonas helianthi 110414 Isolate Unclassified
82 8054357960 Idiomarina rhizosphaerae M1R2S28 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 81.98
Metatranscriptomes 0
Isolates 18.02

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 28.83
Nodule 0
Rhizoplane 2.7
Rhizosphere 53.15
Stem 0
Stem Tuber 0
Unclassified 0.9

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0451802_0799475 3300041460 Bacteria 2650
2 SwRhRL2b_contig_1192991 2162886007 Bacteria 10770
3 Ga0055536_1000566 3300003781 Bacteria 25281
4 Ga0055536_1003518 3300003781 Bacteria 8388
5 Ga0055530_10000310 3300003791 Bacteria 44225
6 Ga0055530_10001108 3300003791 Bacteria 21067
7 Ga0055531_10000676 3300003794 Bacteria 29096
8 Ga0055531_10002945 3300003794 Bacteria 11076
9 Ga0065165_1000896 3300005262 Bacteria 38454
10 Ga0065704_10000437 3300005289 Bacteria 43348
11 Ga0070677_10028951 3300005333 Bacteria 2097
12 Ga0070668_100061566 3300005347 Bacteria 2907
13 Ga0070674_100027868 3300005356 Bacteria 3705
14 Ga0070685_10012289 3300005466 Bacteria 4496
15 Ga0070665_100039698 3300005548 Bacteria 4733
16 Ga0081455_10000831 3300005937 Bacteria 39753
17 Ga0075364_10000276 3300006051 Bacteria 25091
18 Ga0075364_10033770 3300006051 Bacteria 3296
19 Ga0105240_10006581 3300009093 Bacteria 17057
20 Ga0105240_10031021 3300009093 Bacteria 6937
21 Ga0105238_10004900 3300009551 Bacteria 13243
22 Ga0105238_10036867 3300009551 Bacteria 4972
23 Ga0209026_1000812 3300025250 Bacteria 16772
24 Ga0209675_1000025 3300025291 Bacteria 294102
25 Ga0209676_1000086 3300025292 Bacteria 264155
26 Ga0209676_1000155 3300025292 Bacteria 165151
27 Ga0209676_1001500 3300025292 Bacteria 21339
28 Ga0209676_1020498 3300025292 Bacteria 2244
29 Ga0209025_1021667 3300025294 Bacteria 3450
30 Ga0209025_1028101 3300025294 Bacteria 2768
31 Ga0209758_1002376 3300025297 Bacteria 19372
32 Ga0209050_1000104 3300025298 Bacteria 228921
33 Ga0209050_1000245 3300025298 Bacteria 116929
34 Ga0209050_1006009 3300025298 Bacteria 7358
35 Ga0209257_1000145 3300025304 Bacteria 195152
36 Ga0209257_1000750 3300025304 Bacteria 49020
37 Ga0209257_1000860 3300025304 Bacteria 43237
38 Ga0209257_1000995 3300025304 Bacteria 38407
39 Ga0209257_1001181 3300025304 Bacteria 33006
40 Ga0207695_10021349 3300025913 Bacteria 7388
41 Ga0207694_10008306 3300025924 Bacteria 7848
42 Ga0207694_10058259 3300025924 Bacteria 3004
43 Ga0207686_10075954 3300025934 Bacteria 2177
44 Ga0307511_10002013 3300030521 Bacteria 21324
45 Ga0314311_1222767 3300030733 Bacteria 2395
46 Ga0307513_10006101 3300031456 Bacteria 15818
47 Ga0307414_10000412 3300032004 Bacteria 23093
48 Ga0307414_10000953 3300032004 Bacteria 14764
49 Ga0373936_0004648 3300035113 Bacteria 5193
50 Ga0373937_0026684 3300036401 Bacteria 5219
51 Ga0373937_0125750 3300036401 Bacteria 2391
52 Ga0400483_069055 3300039062 Unclassified 2596
53 Ga0439465_0006673 3300041413 Bacteria 3666
54 Ga0439449_0000015 3300042007 Bacteria 49208
55 Ga0439449_0013766 3300042007 Bacteria 3044
56 Ga0495663_0000450 3300046525 Bacteria 15064
57 Ga0495645_0049868 3300046543 Bacteria 3048
58 Ga0495668_0000015 3300046616 Bacteria 441932
59 Ga0495686_0000023 3300047472 Bacteria 400457
60 Ga0495686_0009084 3300047472 Bacteria 7207
61 Ga0496114_0030548 3300048917 Bacteria 4433
62 Ga0496115_0001100 3300048918 Bacteria 19549
63 Ga0496123_0048943 3300048926 Bacteria 2839
64 Ga0496126_0069129 3300048929 Bacteria 3151
65 Ga0501032_0001946 3300049569 Bacteria 16249
66 Ga0501034_0012220 3300049571 Bacteria 8877
67 Ga0501034_0138395 3300049571 Bacteria 2415
68 Ga0501037_0006277 3300049573 Bacteria 8691
69 Ga0501038_0000868 3300049574 Bacteria 26760
70 Ga0501043_0080606 3300049579 Bacteria 2558
71 Ga0501067_0000100 3300049583 Bacteria 49264
72 Ga0501068_0005686 3300049584 Bacteria 6827
73 Ga0501068_0011029 3300049584 Bacteria 5086
74 Ga0501069_0021404 3300049585 Bacteria 3509
75 Ga0501070_0074477 3300049586 Bacteria 2810
76 Ga0501070_0122936 3300049586 Bacteria 2145
77 Ga0501073_0000208 3300049589 Bacteria 38819
78 Ga0501074_0000149 3300049590 Bacteria 36207
79 Ga0501077_0000918 3300049593 Bacteria 17737
80 Ga0501080_0002333 3300049742 Bacteria 16550
81 Ga0501080_0003256 3300049742 Bacteria 14330
82 Ga0501080_0179180 3300049742 Bacteria 1951
83 Ga0501044_0010912 3300049823 Bacteria 9861
84 nmdc:mga00v17_13862_c1 3300050491 Bacteria 4485
85 nmdc:mga00v17_308_c1 3300050491 Bacteria 28036
86 nmdc:mga00v17_40109_c1 3300050491 Bacteria 2808
87 nmdc:mga00v17_60273_c1 3300050491 Bacteria 2330
88 Ga0495601_0003819 3300053077 Bacteria 8667
89 Ga0500568_0008339 3300053139 Bacteria 5006
90 Ga0500627_0000003 3300053158 Bacteria 178186
91 Ga0500645_006563 3300053730 Bacteria 4132
92 2585147178 2582581279 Bacteria 4980720
93 2643822916 2643221560 Bacteria 4801179
94 2643835839 2643221563 Bacteria 4726935
95 2643907847 2643221579 Bacteria 4443405
96 2643915945 2643221581 Bacteria 3893603
97 2644056765 2643221608 Bacteria 4724829
98 2691332935 2690315857 Bacteria 4396207
99 2894417421 2894414249 Bacteria 4405451
100 2895503364 2895498888 Bacteria 5283788
101 2895513199 2895511927 Bacteria 6802080
102 2895523194 2895522137 Bacteria 3284416
103 2895527096 2895525241 Bacteria 3388457
104 2896256062 2896253425 Bacteria 3418029
105 2919514701 2919513703 Bacteria 3844312
106 2919535889 2919534386 Bacteria 4577686
107 2919676746 2919675420 Bacteria 3969095
108 2919690595 2919688452 Bacteria 4595932
109 2923518524 2923516293 Bacteria 3716336
110 8002871948 8002869464 Bacteria 3588529
111 8054359069 8054357960 Bacteria 2867777
112 Ga0451802_0799475
113 SwRhRL2b_contig_1192991
114 Ga0055536_1000566
115 Ga0055536_1003518
116 Ga0055530_10000310
117 Ga0055530_10001108
118 Ga0055531_10000676
119 Ga0055531_10002945
120 Ga0065165_1000896
121 Ga0065704_10000437
122 Ga0070677_10028951
123 Ga0070668_100061566
124 Ga0070674_100027868
125 Ga0070685_10012289
126 Ga0070665_100039698
127 Ga0081455_10000831
128 Ga0075364_10000276
129 Ga0075364_10033770
130 Ga0105240_10006581
131 Ga0105240_10031021
132 Ga0105238_10004900
133 Ga0105238_10036867
134 Ga0209026_1000812
135 Ga0209675_1000025
136 Ga0209676_1000086
137 Ga0209676_1000155
138 Ga0209676_1001500
139 Ga0209676_1020498
140 Ga0209025_1021667
141 Ga0209025_1028101
142 Ga0209758_1002376
143 Ga0209050_1000104
144 Ga0209050_1000245
145 Ga0209050_1006009
146 Ga0209257_1000145
147 Ga0209257_1000750
148 Ga0209257_1000860
149 Ga0209257_1000995
150 Ga0209257_1001181
151 Ga0207695_10021349
152 Ga0207694_10008306
153 Ga0207694_10058259
154 Ga0207686_10075954
155 Ga0307511_10002013
156 Ga0314311_1222767
157 Ga0307513_10006101
158 Ga0307414_10000412
159 Ga0307414_10000953
160 Ga0373936_0004648
161 Ga0373937_0026684
162 Ga0373937_0125750
163 Ga0400483_069055
164 Ga0439465_0006673
165 Ga0439449_0000015
166 Ga0439449_0013766
167 Ga0495663_0000450
168 Ga0495645_0049868
169 Ga0495668_0000015
170 Ga0495686_0000023
171 Ga0495686_0009084
172 Ga0496114_0030548
173 Ga0496115_0001100
174 Ga0496123_0048943
175 Ga0496126_0069129
176 Ga0501032_0001946
177 Ga0501034_0012220
178 Ga0501034_0138395
179 Ga0501037_0006277
180 Ga0501038_0000868
181 Ga0501043_0080606
182 Ga0501067_0000100
183 Ga0501068_0005686
184 Ga0501068_0011029
185 Ga0501069_0021404
186 Ga0501070_0074477
187 Ga0501070_0122936
188 Ga0501073_0000208
189 Ga0501074_0000149
190 Ga0501077_0000918
191 Ga0501080_0002333
192 Ga0501080_0003256
193 Ga0501080_0179180
194 Ga0501044_0010912
195 nmdc:mga00v17_13862_c1
196 nmdc:mga00v17_308_c1
197 nmdc:mga00v17_40109_c1
198 nmdc:mga00v17_60273_c1
199 Ga0495601_0003819
200 Ga0500568_0008339
201 Ga0500627_0000003
202 Ga0500645_006563
203 2585147178
204 2643822916
205 2643835839
206 2643907847
207 2643915945
208 2644056765
209 2691332935
210 2894417421
211 2895503364
212 2895513199
213 2895523194
214 2895527096
215 2896256062
216 2919514701
217 2919535889
218 2919676746
219 2919690595
220 2923518524
221 8002871948
222 8054359069

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF05960

DUF885

Bacterial protein of unknown function (DUF885)

100

649

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
3o0y-assembly4.cif.gz_A the crystal structure of the putative lipoprotein from colwellia psychrerythraea 0.9102 43 618
3o0y-assembly2.cif.gz_B the crystal structure of the putative lipoprotein from colwellia psychrerythraea 0.9056 43 618
3o0y-assembly4.cif.gz_A the crystal structure of the putative lipoprotein from colwellia psychrerythraea 0.8952 43 618
3o0y-assembly2.cif.gz_B the crystal structure of the putative lipoprotein from colwellia psychrerythraea 0.8908 43 618
3iuk-assembly2.cif.gz_B crystal structure of putative bacterial protein of unknown function (duf885, pf05960.1, ) from arthrobacter aurescens tc1, reveals fold similar to that of m32 carboxypeptidases 0.8247 47 612
ID Description Score Start End Superfamily
af_Q54Y95_120_681_1.10.1370.30 Mainly Alpha;Orthogonal Bundle;Neurolysin; domain 3; 0.9305 70 611 1.10.1370.30
af_Q54Y95_120_681_1.10.1370.30 Mainly Alpha;Orthogonal Bundle;Neurolysin; domain 3; 0.897 70 611 1.10.1370.30
5jsnD00 Mainly Alpha;Orthogonal Bundle;Topoisomerase I; Chain A, domain 4;Ribosome-recycling factor 0.4261 151 279 1.10.132.20
5jsnD00 Mainly Alpha;Orthogonal Bundle;Topoisomerase I; Chain A, domain 4;Ribosome-recycling factor 0.4161 151 279 1.10.132.20
af_Q4CSJ0_1_138_1.25.40.90 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.4136 148 308 1.25.40.90
ID Description Score Start End GO Terms
AF-A0A8B6CFV5-F1-model_v4 DUF885 domain-containing protein 0.9956 506 621
AF-A0A4Q5XHJ5-F1-model_v4 DUF885 domain-containing protein 0.994 344 622
AF-A0A4Q5WPC8-F1-model_v4 DUF885 domain-containing protein 0.9939 381 622
AF-A0A2V8EC10-F1-model_v4 DUF885 domain-containing protein 0.9924 62 618
AF-A0A2D9SQ33-F1-model_v4 DUF885 domain-containing protein 0.9916 37 620

Map