F066657

General Info

Members Datasets Scaffolds Average Seq Length
112 91 85 428

Family's Representative Sequence

Representative Sequence 2162886007|SwRhRL2b_contig_929085|SwRhRL2b_0508.00002950
Length 445
Sequence MGSSVFDRATSIFMKKSKVVVFWFRRDLRLADNVGLSQALGTGLPVLPIFIFDEDILGRLEDKLDRRVDYIHQVLDGINKKLREYGATLKTFHGSPLAIFKTLHEQYDIQEVYCNSDYEPKAIQRDRTIVEFFYAAGVAFNTVKDQVIFDKHELLKNDGTPYTVYTPYAKRWREKLTVADYQSTDQIDGHFFQQTYAPIIPLEKIGFKKTDLTFEPPQLNAAIINTYDKYRDYPALEGTTNLGIALRFGTISIRRCVAFAKQHNEVWLSELIWREFFMQILFHFPNVVNESFKKKYDDIQWRNDETEFERWCQGKTGYPLVDAGMRQLNRTGYMHNRVRMVAASFLCKHLLIDWRWGEAYFAQKLNDYDLSANNGNWQWAAGSGCDAAPYFRVFNPIIQAEKFDKKQEYSRQWIPELGTTDYPEPIIAHPIARERALKAYASALK

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2582581278 Chryseobacterium sp. CF365 Isolate Rhizosphere
3 2585428182 Chryseobacterium sp. YR477 Isolate Rhizosphere
4 2585428184 Chryseobacterium sp. YR480 Isolate Rhizosphere
5 2585428185 Chryseobacterium sp. YR459 Isolate Rhizosphere
6 2585428187 Chryseobacterium sp. YR460 Isolate Rhizosphere
7 2721755487 Sphingobacterium sp. B29 Isolate Rhizosphere
8 2738541273 Elizabethkingia sp. YR214 Isolate Unclassified
9 2738543014 Elizabethkingia sp. YR191 Isolate Unclassified
10 2765235839 Chryseobacterium indologenes AA5 Isolate Unclassified
11 2816332188 Chryseobacterium aquifrigidense 110 (version 2) Isolate Unclassified
12 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
13 2871720351 Chryseobacterium sp. KLBC 52 Isolate Nodule
14 2881247448 Flavobacterium beibuense RSKm HC5 Isolate Rhizosphere
15 2889290771 Chryseobacterium sp. PvR013 Isolate Rhizosphere
16 2890804823 Fluviicola sp. SGL-29 Isolate Rhizosphere
17 2896317667 Sphingobacterium sp. SGR-19 Isolate Rhizosphere
18 2898713307 Sphingobacterium sp. SGG-5 Isolate Rhizosphere
19 2904780799 Sphingobacterium sp. 1304 Isolate Rhizosphere
20 2911138879 Spirosoma sp. KUDC1026 Isolate Rhizosphere
21 2919177583 Sphingobacterium sp. 2149 Isolate Rhizosphere
22 2919509842 Flavobacterium arsenatis 3773 Isolate Unclassified
23 2945924605 Chryseobacterium ginsenosidimutans W1I9 Isolate Rhizosphere
24 2958512119 Flavobacterium sp. Sd200 Isolate Rhizosphere
25 2977243572 Chryseobacterium sp. SORGH_AS 447 Isolate Unclassified
26 2993372514 Chryseobacterium sp. SLBN-27 Isolate Rhizosphere
27 2993480792 Chryseobacterium nepalense SLBN-92 Isolate Rhizosphere
28 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
29 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
30 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
31 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
32 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
33 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
34 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
35 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
36 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
37 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
38 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
39 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
40 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
41 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
44 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
45 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
46 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
47 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
48 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
49 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
50 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
51 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
52 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
53 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
54 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
55 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
56 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
57 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
58 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
59 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
60 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
61 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
62 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
63 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
64 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
65 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
66 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
67 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
68 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
69 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
70 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
71 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
72 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
73 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
74 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
75 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
76 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
77 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
78 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
79 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
80 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
82 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
83 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
84 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
85 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049703 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control Metagenome Rhizosphere
87 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
88 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
89 3300050005 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E22_A_7_drought Metagenome Rhizosphere
90 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
91 8055588893 Parapedobacter lycopersici KACC 18788 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 75.89
Metatranscriptomes 0
Isolates 24.11

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.79
Nodule 0.89
Rhizoplane 2.68
Rhizosphere 72.32
Stem 0
Stem Tuber 0
Unclassified 22.32

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_929085 2162886007 Bacteria 2801
2 Ga0065704_10098876 3300005289 Bacteria 2335
3 Ga0070682_100000245 3300005337 Bacteria 39270
4 Ga0070684_100023581 3300005535 Bacteria 5151
5 Ga0105244_10000244 3300009036 Bacteria 55612
6 Ga0105243_10000012 3300009148 Bacteria 300885
7 Ga0157373_10000120 3300013100 Bacteria 60625
8 Ga0157371_10000036 3300013102 Bacteria 215191
9 Ga0157370_10082251 3300013104 Bacteria 3029
10 Ga0157369_10000153 3300013105 Bacteria 97572
11 Ga0157378_10046159 3300013297 Bacteria 3873
12 Ga0182006_1000048 3300015261 Bacteria 184700
13 Ga0163161_10001295 3300017792 Bacteria 18666
14 Ga0163161_10005380 3300017792 Bacteria 8893
15 Ga0163161_10255407 3300017792 Bacteria 1367
16 Ga0209675_1000032 3300025291 Bacteria 273013
17 Ga0207655_1000702 3300025728 Bacteria 38833
18 Ga0207709_10000006 3300025935 Bacteria 800946
19 Ga0307515_10018306 3300028794 Bacteria 12693
20 Ga0265327_10006818 3300031251 Bacteria 9003
21 Ga0307408_100002510 3300031548 Bacteria 12823
22 Ga0307408_100002832 3300031548 Bacteria 12031
23 Ga0265314_10026371 3300031711 Bacteria 4367
24 Ga0316576_10060809 3300031727 Bacteria 2768
25 Ga0307405_10000002 3300031731 Bacteria 575196
26 Ga0307412_10017506 3300031911 Bacteria 4290
27 Ga0307416_100000003 3300032002 Bacteria 509060
28 Ga0307414_10005316 3300032004 Bacteria 7081
29 Ga0307414_10087254 3300032004 Bacteria 2305
30 Ga0316574_0164069 3300035398 Bacteria 1431
31 Ga0316582_0018567 3300036647 Bacteria 4050
32 Ga0316584_0013776 3300036712 Bacteria 5733
33 Ga0316584_0034226 3300036712 Bacteria 3766
34 Ga0400483_026018 3300039062 Bacteria 22964
35 Ga0451577_0000015 3300042876 Bacteria 538333
36 Ga0451577_0046431 3300042876 Bacteria 3886
37 Ga0453683_0000061 3300044673 Bacteria 185470
38 Ga0453683_0003215 3300044673 Bacteria 12149
39 Ga0453683_0075477 3300044673 Bacteria 2110
40 Ga0453683_0079680 3300044673 Unclassified 2051
41 Ga0453684_0000081 3300044712 Bacteria 402985
42 Ga0453684_0075548 3300044712 Bacteria 4234
43 Ga0453684_0159731 3300044712 Bacteria 2667
44 Ga0451576_0000506 3300045051 Bacteria 85303
45 Ga0451576_0039078 3300045051 Bacteria 5022
46 Ga0495627_001739 3300046453 Bacteria 11797
47 Ga0495596_0000771 3300046500 Bacteria 19541
48 Ga0495632_0001619 3300046519 Bacteria 18475
49 Ga0495643_0000606 3300046522 Bacteria 43168
50 Ga0495663_0000401 3300046525 Bacteria 15934
51 Ga0495633_0005310 3300046558 Bacteria 7917
52 Ga0495625_0000612 3300046660 Bacteria 51774
53 Ga0496103_0056571 3300048906 Bacteria 2435
54 Ga0496113_0078746 3300048916 Bacteria 2522
55 Ga0496115_0057166 3300048918 Bacteria 3137
56 Ga0496116_0000012 3300048919 Bacteria 611365
57 Ga0496116_0015047 3300048919 Bacteria 6134
58 Ga0496117_0000050 3300048920 Bacteria 292727
59 Ga0496117_0023508 3300048920 Bacteria 4906
60 Ga0496118_0000044 3300048921 Bacteria 283524
61 Ga0496119_0000002 3300048922 Bacteria 738385
62 Ga0496121_0060429 3300048924 Bacteria 3117
63 Ga0496121_0164924 3300048924 Bacteria 1616
64 Ga0496122_0000658 3300048925 Bacteria 69587
65 Ga0496122_0003017 3300048925 Bacteria 22834
66 Ga0496123_0000856 3300048926 Bacteria 48564
67 Ga0496123_0005161 3300048926 Bacteria 13286
68 Ga0496123_0009981 3300048926 Bacteria 8464
69 Ga0496124_0005505 3300048927 Bacteria 14216
70 Ga0496125_0000349 3300048928 Bacteria 87610
71 Ga0496125_0011019 3300048928 Bacteria 9076
72 Ga0496126_0001903 3300048929 Bacteria 30010
73 Ga0501032_0009943 3300049569 Bacteria 6868
74 Ga0501033_0121886 3300049570 Bacteria 1892
75 Ga0501034_0006249 3300049571 Bacteria 12819
76 Ga0501034_0209541 3300049571 Bacteria 1905
77 Ga0501038_0027076 3300049574 Bacteria 5103
78 Ga0501038_0033328 3300049574 Bacteria 4538
79 Ga0501043_0113306 3300049579 Bacteria 2130
80 Ga0501046_0073417 3300049580 Bacteria 2655
81 Ga0501219_000105 3300049703 Bacteria 14692
82 Ga0501241_010769 3300049758 Bacteria 1661
83 Ga0501035_0060222 3300049822 Bacteria 3380
84 Ga0501284_00008 3300050005 Bacteria 143517
85 Ga0500641_0000042 3300053096 Bacteria 67195

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049579 Ga0501043_0113306 Ga0501043_0113306_14_1132 369
2 3300005535 Ga0070684_100023581 Ga0070684_1000235815 394
3 3300048918 Ga0496115_0057166 Ga0496115_0057166_1926_3119 394
4 3300048927 Ga0496124_0005505 Ga0496124_0005505_12863_14062 399
5 3300046660 Ga0495625_0000612 Ga0495625_0000612_2786_4090 407
6 3300017792 Ga0163161_10005380 Ga0163161_100053804 408
7 3300046519 Ga0495632_0001619 Ga0495632_0001619_7869_9173 408
8 3300046558 Ga0495633_0005310 Ga0495633_0005310_161_1465 408
9 3300013104 Ga0157370_10082251 Ga0157370_100822512 409
10 3300013105 Ga0157369_10000153 Ga0157369_1000015376 409
11 3300042876 Ga0451577_0000015 Ga0451577_0000015_318851_320134 412
12 3300044673 Ga0453683_0075477 Ga0453683_0075477_136_1419 412
13 3300044712 Ga0453684_0000081 Ga0453684_0000081_136345_137628 412
14 3300045051 Ga0451576_0000506 Ga0451576_0000506_21588_22871 412
15 3300013102 Ga0157371_10000036 Ga0157371_1000003660 413
16 3300053096 Ga0500641_0000042 Ga0500641_0000042_52232_53482 413
17 iso_pu_bacteria 2881247448 2881248165 420
18 iso_pu_bacteria 2958512119 2958512571 420
19 3300015261 Ga0182006_1000048 Ga0182006_1000048134 421
20 3300032004 Ga0307414_10087254 Ga0307414_100872542 421
21 iso_pu_bacteria 2919509842 2919512560 421
22 3300005289 Ga0065704_10098876 Ga0065704_100988762 423
23 3300031731 Ga0307405_10000002 Ga0307405_10000002382 423
24 3300048924 Ga0496121_0164924 Ga0496121_0164924_31_1311 423
25 3300017792 Ga0163161_10001295 Ga0163161_1000129519 424
26 3300017792 Ga0163161_10255407 Ga0163161_102554071 424
27 3300039062 Ga0400483_026018 Ga0400483_026018_6429_7712 424
28 3300044712 Ga0453684_0075548 Ga0453684_0075548_852_2141 424
29 3300044712 Ga0453684_0159731 Ga0453684_0159731_1243_2526 424
30 3300046453 Ga0495627_001739 Ga0495627_001739_4186_5478 424
31 3300046522 Ga0495643_0000606 Ga0495643_0000606_22106_23392 424
32 iso_pu_bacteria 2890804823 2890807027 424
33 3300031727 Ga0316576_10060809 Ga0316576_100608092 425
34 3300035398 Ga0316574_0164069 Ga0316574_0164069_53_1360 425
35 3300036647 Ga0316582_0018567 Ga0316582_0018567_769_2055 425
36 3300036712 Ga0316584_0034226 Ga0316584_0034226_243_1550 425
37 3300044673 Ga0453683_0079680 Ga0453683_0079680_668_1957 425
38 iso_pu_bacteria 2738541273 2738698958 426
39 iso_pu_bacteria 2738543014 2739254674 426
40 iso_pu_bacteria 2582581278 2585144827 427
41 iso_pu_bacteria 2585428182 2588208435 427
42 iso_pu_bacteria 2585428184 2588219659 427
43 iso_pu_bacteria 2585428185 2588224031 427
44 iso_pu_bacteria 2765235839 2765572443 427
45 iso_pu_bacteria 2816332188 2816872725 427
46 iso_pu_bacteria 2852627209 2852631341 427
47 iso_pu_bacteria 2871720351 2871721746 427
48 iso_pu_bacteria 2889290771 2889291920 427
49 iso_pu_bacteria 2896317667 2896318545 427
50 iso_pu_bacteria 2898713307 2898715648 427
51 iso_pu_bacteria 2911138879 2911140264 427
52 iso_pu_bacteria 2977243572 2977247012 427
53 iso_pu_bacteria 8055588893 8055588991 427
54 3300046525 Ga0495663_0000401 Ga0495663_0000401_3179_4468 428
55 iso_pu_bacteria 2585428187 2588234929 428
56 iso_pu_bacteria 2721755487 2722729201 428
57 iso_pu_bacteria 2904780799 2904780913 428
58 iso_pu_bacteria 2919177583 2919180623 428
59 iso_pu_bacteria 2945924605 2945926587 428
60 iso_pu_bacteria 2993372514 2993374360 428
61 iso_pu_bacteria 2993480792 2993481250 428
62 3300013100 Ga0157373_10000120 Ga0157373_1000012040 430
63 3300028794 Ga0307515_10018306 Ga0307515_100183068 430
64 3300049569 Ga0501032_0009943 Ga0501032_0009943_2363_3664 430
65 3300049570 Ga0501033_0121886 Ga0501033_0121886_159_1460 430
66 3300049571 Ga0501034_0209541 Ga0501034_0209541_362_1663 430
67 3300049574 Ga0501038_0027076 Ga0501038_0027076_838_2139 430
68 3300049574 Ga0501038_0033328 Ga0501038_0033328_2614_3915 430
69 3300049580 Ga0501046_0073417 Ga0501046_0073417_400_1701 430
70 3300049703 Ga0501219_000105 Ga0501219_000105_5799_7106 430
71 3300049758 Ga0501241_010769 Ga0501241_010769_88_1395 430
72 3300049822 Ga0501035_0060222 Ga0501035_0060222_2031_3332 430
73 3300050005 Ga0501284_00008 Ga0501284_00008_138732_140039 430
74 3300005337 Ga0070682_100000245 Ga0070682_10000024515 431
75 3300013297 Ga0157378_10046159 Ga0157378_100461593 431
76 3300025291 Ga0209675_1000032 Ga0209675_1000032193 431
77 3300032002 Ga0307416_100000003 Ga0307416_100000003345 431
78 3300032004 Ga0307414_10005316 Ga0307414_100053163 431
79 3300046500 Ga0495596_0000771 Ga0495596_0000771_10525_11820 431
80 3300048906 Ga0496103_0056571 Ga0496103_0056571_364_1659 431
81 3300048916 Ga0496113_0078746 Ga0496113_0078746_1123_2418 431
82 3300048919 Ga0496116_0000012 Ga0496116_0000012_11336_12631 431
83 3300048920 Ga0496117_0000050 Ga0496117_0000050_107816_109111 431
84 3300048921 Ga0496118_0000044 Ga0496118_0000044_183644_184939 431
85 3300048922 Ga0496119_0000002 Ga0496119_0000002_185822_187117 431
86 3300048924 Ga0496121_0060429 Ga0496121_0060429_485_1780 431
87 3300048925 Ga0496122_0000658 Ga0496122_0000658_32945_34240 431
88 3300048926 Ga0496123_0000856 Ga0496123_0000856_28955_30250 431
89 3300048926 Ga0496123_0005161 Ga0496123_0005161_6861_8156 431
90 3300048928 Ga0496125_0000349 Ga0496125_0000349_31816_33111 431
91 3300048928 Ga0496125_0011019 Ga0496125_0011019_6416_7711 431
92 3300048929 Ga0496126_0001903 Ga0496126_0001903_7737_9032 431
93 3300009148 Ga0105243_10000012 Ga0105243_10000012177 432
94 3300025935 Ga0207709_10000006 Ga0207709_10000006566 432
95 3300031548 Ga0307408_100002510 Ga0307408_1000025105 432
96 3300031548 Ga0307408_100002832 Ga0307408_1000028323 432
97 3300031911 Ga0307412_10017506 Ga0307412_100175065 432
98 3300048919 Ga0496116_0015047 Ga0496116_0015047_304_1602 432
99 3300048920 Ga0496117_0023508 Ga0496117_0023508_1454_2752 432
100 3300048925 Ga0496122_0003017 Ga0496122_0003017_14496_15794 432
101 3300048926 Ga0496123_0009981 Ga0496123_0009981_4675_5973 432
102 3300049571 Ga0501034_0006249 Ga0501034_0006249_2258_3562 433
103 3300031251 Ga0265327_10006818 Ga0265327_100068187 435
104 3300036712 Ga0316584_0013776 Ga0316584_0013776_2252_3586 435
105 3300042876 Ga0451577_0046431 Ga0451577_0046431_1094_2419 436
106 3300044673 Ga0453683_0000061 Ga0453683_0000061_61808_63133 436
107 3300044673 Ga0453683_0003215 Ga0453683_0003215_263_1588 436
108 3300045051 Ga0451576_0039078 Ga0451576_0039078_2489_3814 436
109 3300009036 Ga0105244_10000244 Ga0105244_1000024433 438
110 3300025728 Ga0207655_1000702 Ga0207655_100070217 438
111 2162886007 SwRhRL2b_contig_929085 SwRhRL2b_0508.00002950 445
112 3300031711 Ga0265314_10026371 Ga0265314_100263713 445

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03441

FAD_binding_7

FAD binding domain of DNA photolyase

267

421

0.98

PF00875

DNA_photolyase

DNA photolyase

20

186

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
1owo-assembly1.cif.gz_A data4:photoreduced dna photolyase / received x-rays dose 1.2 exp15 photons/mm2 0.9232 17 444
4u63-assembly1.cif.gz_A crystal structure of a bacterial class iii photolyase from agrobacterium tumefaciens at 1.67a resolution 0.8972 16 444
1dnp-assembly2.cif.gz_B structure of deoxyribodipyrimidine photolyase 0.8942 19 445
1owo-assembly1.cif.gz_A data4:photoreduced dna photolyase / received x-rays dose 1.2 exp15 photons/mm2 0.8869 17 444
2vtb-assembly3.cif.gz_E structure of cryptochrome 3 - dna complex 0.8705 19 428
ID Description Score Start End Superfamily
af_P05066_403_565_1.10.579.10 Mainly Alpha;Orthogonal Bundle;DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3;DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 0.9817 290 443 1.10.579.10
1dnpB03 Mainly Alpha;Orthogonal Bundle;DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3;DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 0.9756 285 445 1.10.579.10
af_A0A0R0HV48_301_502_1.10.579.10 Mainly Alpha;Orthogonal Bundle;DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3;DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 0.9712 285 444 1.10.579.10
4u63A03 Mainly Alpha;Orthogonal Bundle;DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3;DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 0.9699 285 444 1.10.579.10
af_A4I8R0_315_541_1.10.579.10 Mainly Alpha;Orthogonal Bundle;DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3;DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 0.9639 289 444 1.10.579.10
ID Description Score Start End GO Terms
AF-A0A1M7CVY7-F1-model_v4 Deoxyribodipyrimidine photo-lyase 0.9939 16 445 GO:0003677
GO:0003904
GO:0006139
GO:0006950
GO:0009416
GO:0071949
AF-A0A519ULV8-F1-model_v4 Cryptochrome/DNA photolyase FAD-binding domain-containing protein 0.9938 280 445 GO:0003677
GO:0003904
GO:0006139
GO:0006950
GO:0009416
GO:0071949
AF-A0A519JM51-F1-model_v4 Deoxyribodipyrimidine photo-lyase 0.9919 299 445 GO:0003677
GO:0003904
GO:0006139
GO:0006950
GO:0071949
AF-A0A2G6H8A7-F1-model_v4 Deoxyribodipyrimidine photolyase 0.9912 271 445 GO:0003677
GO:0003904
GO:0071949
AF-A0A699UEP0-F1-model_v4 Cryptochrome/DNA photolyase FAD-binding domain-containing protein 0.9894 285 445 GO:0003677
GO:0003904
GO:0006139
GO:0006950
GO:0071949

Feature Viewer

pLDDT pTM Quality
92.28 0.88 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map