F079319

General Info

Members Datasets Scaffolds Average Seq Length
114 81 114 431

Family's Representative Sequence

Representative Sequence 3300028800|Ga0265338_10000002|Ga0265338_10000002795
Length 459
Sequence MSDKPKKLSTAPYKGVRDFFPEDMAVQRKIFGIWRDAAEKCGYEEYGASVLEPAELYRTKTSEEIVNEQTYTFTDRGDREVTLRPEMTPTLARMVAARRRELTYPLRWYSIPNLFRYEQPQRGRVREHWQLNVDIFGVDSINAEIEVISMASDITRAYGLKDSDFEIRINNRKVMNYVTREVFGLDEVSARKVARLIDKKDKLARDAFEIGVREIFGEGQIIESARREKMQKEADSFLTLLNSKNFEEFTSNLPQTAEEHEGLREIRDVIAGLEKLGITNTRFDQTLMRGFDYYTGIVFEIFDLNPENRRSVFGGGRYDDLLALFGNEKVPAVGFGAGDVIARDLMETYGIISKSENASTEGSAAIVASADLSLCVVGDANAAYALDVAQSLREKGVRVSVDFSGKKLGDQIKNADKKCIPRIIVIGDEEVKTGKLRMKTLKTGEEVEATEDSLPSLIQ

Samples

Sample ID Description Type Environment
1 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
4 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
5 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
6 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
7 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
8 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
9 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
10 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
11 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
12 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
13 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
14 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
15 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
16 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
17 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
18 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
19 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
20 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
21 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
22 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
23 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
24 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
25 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
26 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
27 3300009993 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_106 metaG Metagenome Rhizosphere
28 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
29 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
30 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
31 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
32 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
48 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
49 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
50 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
51 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
52 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
53 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
54 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
55 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
56 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
57 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
58 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
59 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
60 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
61 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
62 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
63 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
64 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
65 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
66 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
67 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
68 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
69 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
70 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
71 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
72 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
73 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
74 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
75 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
76 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
77 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
78 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
79 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
80 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
81 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.75
Nodule 0
Rhizoplane 0
Rhizosphere 97.37
Stem 0
Stem Tuber 0
Unclassified 0.88

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10256394 3300003323 Bacteria 3042
2 Ga0070658_10000012 3300005327 Bacteria 277871
3 Ga0070658_10013674 3300005327 Bacteria 6513
4 Ga0070660_100113121 3300005339 Bacteria 2161
5 Ga0070691_10013975 3300005341 Bacteria 3682
6 Ga0070671_100005518 3300005355 Bacteria 10077
7 Ga0070674_100000707 3300005356 Bacteria 16995
8 Ga0070673_100000224 3300005364 Bacteria 28378
9 Ga0070711_100000017 3300005439 Bacteria 151786
10 Ga0070678_100010909 3300005456 Bacteria 5576
11 Ga0070681_10000311 3300005458 Bacteria 39541
12 Ga0070681_10005221 3300005458 Bacteria 12543
13 Ga0068867_100033937 3300005459 Unclassified 3698
14 Ga0070685_10000215 3300005466 Bacteria 38049
15 Ga0070685_10003202 3300005466 Bacteria 8332
16 Ga0070679_100007023 3300005530 Bacteria 10502
17 Ga0070679_100020236 3300005530 Bacteria 6486
18 Ga0070679_100040978 3300005530 Unclassified 4609
19 Ga0070679_100049568 3300005530 Bacteria 4182
20 Ga0070684_100141096 3300005535 Bacteria 2179
21 Ga0070672_100003068 3300005543 Bacteria 10769
22 Ga0070686_100035664 3300005544 Unclassified 3073
23 Ga0070686_100078042 3300005544 Bacteria 2185
24 Ga0070665_100049876 3300005548 Unclassified 4200
25 Ga0068855_100033704 3300005563 Bacteria 6110
26 Ga0068855_100044251 3300005563 Bacteria 5270
27 Ga0068856_100088443 3300005614 Unclassified 3080
28 Ga0075436_100005162 3300006914 Bacteria 8988
29 Ga0105240_10000003 3300009093 Bacteria 1183681
30 Ga0105245_10001120 3300009098 Bacteria 24232
31 Ga0105243_10000001 3300009148 Bacteria 1156578
32 Ga0105242_10000135 3300009176 Bacteria 53544
33 Ga0105248_10190921 3300009177 Unclassified 2308
34 Ga0105237_10021926 3300009545 Bacteria 6560
35 Ga0105028_100929 3300009993 Bacteria 3090
36 Ga0105239_10012962 3300010375 Bacteria 9276
37 Ga0157369_10204749 3300013105 Bacteria 2070
38 Ga0157374_10000195 3300013296 Bacteria 56142
39 Ga0157378_10018720 3300013297 Bacteria 6088
40 Ga0207705_10000056 3300025909 Bacteria 157554
41 Ga0207707_10000009 3300025912 Bacteria 300141
42 Ga0207707_10000010 3300025912 Bacteria 295156
43 Ga0207707_10000271 3300025912 Bacteria 55925
44 Ga0207695_10000005 3300025913 Bacteria 1196715
45 Ga0207663_10000002 3300025916 Bacteria 534155
46 Ga0207652_10029359 3300025921 Unclassified 4597
47 Ga0207652_10034777 3300025921 Bacteria 4249
48 Ga0207694_10220797 3300025924 Bacteria 1546
49 Ga0207686_10000001 3300025934 Bacteria 1169580
50 Ga0207709_10000002 3300025935 Bacteria 1171536
51 Ga0207669_10017779 3300025937 Unclassified 3656
52 Ga0207651_10000167 3300025960 Bacteria 28415
53 Ga0207668_10146189 3300025972 Unclassified 1824
54 Ga0207702_10052140 3300026078 Unclassified 3461
55 Ga0207648_10034257 3300026089 Unclassified 4477
56 Ga0207683_10012604 3300026121 Bacteria 7212
57 Ga0268266_10004740 3300028379 Bacteria 12931
58 Ga0265336_10004379 3300028666 Bacteria 5350
59 Ga0265338_10000002 3300028800 Bacteria 856588
60 Ga0265338_10000164 3300028800 Bacteria 121166
61 Ga0265338_10000516 3300028800 Bacteria 68039
62 Ga0265338_10000964 3300028800 Bacteria 48471
63 Ga0265338_10002581 3300028800 Bacteria 26773
64 Ga0265338_10017175 3300028800 Bacteria 7818
65 Ga0265338_10035957 3300028800 Bacteria 4750
66 Ga0265338_10051985 3300028800 Bacteria 3683
67 Ga0265338_10054649 3300028800 Bacteria 3558
68 Ga0265338_10078145 3300028800 Archaea 2793
69 Ga0265338_10174354 3300028800 Bacteria 1646
70 Ga0265324_10018367 3300029957 Unclassified 2531
71 Ga0265330_10000979 3300031235 Bacteria 17473
72 Ga0265331_10000365 3300031250 Bacteria 47433
73 Ga0265327_10000563 3300031251 Bacteria 63433
74 Ga0265327_10000828 3300031251 Bacteria 46477
75 Ga0265316_10003246 3300031344 Bacteria 16519
76 Ga0265316_10003716 3300031344 Bacteria 15361
77 Ga0265316_10027188 3300031344 Bacteria 4742
78 Ga0265314_10003907 3300031711 Bacteria 14159
79 Ga0265314_10029511 3300031711 Bacteria 4075
80 Ga0265342_10030958 3300031712 Bacteria 3312
81 Ga0395900_0001560 3300037418 Bacteria 27209
82 Ga0395898_0017849 3300037466 Bacteria 7240
83 Ga0395905_0000238 3300037471 Bacteria 83164
84 Ga0395901_0008089 3300038443 Bacteria 10622
85 Ga0451577_0069703 3300042876 Bacteria 3136
86 Ga0451577_0143514 3300042876 Bacteria 2146
87 Ga0453684_0000030 3300044712 Bacteria 752725
88 Ga0453684_0008937 3300044712 Bacteria 17730
89 Ga0453684_0069457 3300044712 Bacteria 4468
90 Ga0451576_0000110 3300045051 Bacteria 210334
91 Ga0501032_0129907 3300049569 Unclassified 1662
92 Ga0501033_0089911 3300049570 Bacteria 2246
93 Ga0501034_0000006 3300049571 Bacteria 358887
94 Ga0501034_0000246 3300049571 Bacteria 100202
95 Ga0501034_0000971 3300049571 Bacteria 41253
96 Ga0501034_0057869 3300049571 Unclassified 3897
97 Ga0501039_0027145 3300049575 Unclassified 4402
98 Ga0501043_0007150 3300049579 Bacteria 8880
99 Ga0501047_0009353 3300049581 Bacteria 9254
100 Ga0501067_0000559 3300049583 Bacteria 20118
101 Ga0501073_0000001 3300049589 Bacteria 677932
102 Ga0501074_0028670 3300049590 Unclassified 4035
103 Ga0501077_0010702 3300049593 Bacteria 5712
104 Ga0501080_0075000 3300049742 Bacteria 3147
105 Ga0501083_0020774 3300049744 Archaea 4565
106 Ga0501083_0038785 3300049744 Unclassified 3237
107 Ga0501280_000004 3300049776 Bacteria 87510
108 Ga0501035_0040026 3300049822 Unclassified 4238
109 nmdc:mga08x19_3795_c1 3300050514 Bacteria 8989
110 Ga0500556_0000946 3300053104 Bacteria 15710
111 Ga0500616_0000039 3300053153 Bacteria 383915
112 Ga0501084_0038461 3300054114 Bacteria 4000
113 Ga0501084_0045491 3300054114 Unclassified 3675
114 Ga0501082_0001288 3300060353 Bacteria 21985

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300025924 Ga0207694_10220797 Ga0207694_102207972 331
2 3300028800 Ga0265338_10002581 Ga0265338_1000258131 396
3 3300031711 Ga0265314_10029511 Ga0265314_100295111 396
4 3300049569 Ga0501032_0129907 Ga0501032_0129907_151_1434 398
5 3300049571 Ga0501034_0000246 Ga0501034_0000246_3938_5221 398
6 3300049575 Ga0501039_0027145 Ga0501039_0027145_2524_3807 398
7 3300049579 Ga0501043_0007150 Ga0501043_0007150_1467_2750 398
8 3300049581 Ga0501047_0009353 Ga0501047_0009353_7910_9193 398
9 3300049583 Ga0501067_0000559 Ga0501067_0000559_14418_15701 398
10 3300049589 Ga0501073_0000001 Ga0501073_0000001_304670_305953 398
11 3300049590 Ga0501074_0028670 Ga0501074_0028670_264_1547 398
12 3300049593 Ga0501077_0010702 Ga0501077_0010702_3062_4345 398
13 3300049744 Ga0501083_0038785 Ga0501083_0038785_642_1925 398
14 3300054114 Ga0501084_0045491 Ga0501084_0045491_135_1418 398
15 3300060353 Ga0501082_0001288 Ga0501082_0001288_18693_19976 398
16 3300054114 Ga0501084_0038461 Ga0501084_0038461_938_2137 399
17 3300049822 Ga0501035_0040026 Ga0501035_0040026_145_1359 404
18 3300028800 Ga0265338_10078145 Ga0265338_100781453 406
19 3300049571 Ga0501034_0000971 Ga0501034_0000971_16464_17699 407
20 3300005458 Ga0070681_10005221 Ga0070681_100052218 408
21 3300005530 Ga0070679_100007023 Ga0070679_1000070235 408
22 3300005530 Ga0070679_100049568 Ga0070679_1000495682 408
23 3300005563 Ga0068855_100033704 Ga0068855_1000337043 408
24 3300005563 Ga0068855_100044251 Ga0068855_1000442513 408
25 3300025912 Ga0207707_10000009 Ga0207707_1000000972 408
26 3300025912 Ga0207707_10000010 Ga0207707_1000001072 408
27 3300025921 Ga0207652_10034777 Ga0207652_100347775 408
28 3300028800 Ga0265338_10000516 Ga0265338_1000051630 408
29 3300031711 Ga0265314_10003907 Ga0265314_1000390710 409
30 3300049744 Ga0501083_0020774 Ga0501083_0020774_173_1420 409
31 3300031712 Ga0265342_10030958 Ga0265342_100309582 410
32 3300049742 Ga0501080_0075000 Ga0501080_0075000_843_2084 410
33 3300005439 Ga0070711_100000017 Ga0070711_100000017142 411
34 3300025916 Ga0207663_10000002 Ga0207663_1000000248 411
35 3300049571 Ga0501034_0000006 Ga0501034_0000006_291612_292871 412
36 3300049571 Ga0501034_0057869 Ga0501034_0057869_1519_2781 413
37 3300005458 Ga0070681_10000311 Ga0070681_100003115 415
38 3300005530 Ga0070679_100040978 Ga0070679_1000409782 415
39 3300025912 Ga0207707_10000271 Ga0207707_1000027131 415
40 3300025921 Ga0207652_10029359 Ga0207652_100293595 415
41 3300053153 Ga0500616_0000039 Ga0500616_0000039_313815_315146 415
42 3300005544 Ga0070686_100035664 Ga0070686_1000356643 416
43 3300005544 Ga0070686_100078042 Ga0070686_1000780422 416
44 3300028800 Ga0265338_10035957 Ga0265338_100359574 416
45 3300031251 Ga0265327_10000563 Ga0265327_1000056334 420
46 3300028800 Ga0265338_10000964 Ga0265338_1000096424 422
47 3300053104 Ga0500556_0000946 Ga0500556_0000946_12184_13479 422
48 3300049570 Ga0501033_0089911 Ga0501033_0089911_333_1616 423
49 3300028666 Ga0265336_10004379 Ga0265336_100043795 424
50 3300028800 Ga0265338_10000164 Ga0265338_1000016441 424
51 3300042876 Ga0451577_0143514 Ga0451577_0143514_588_1898 424
52 3300044712 Ga0453684_0008937 Ga0453684_0008937_12896_14182 424
53 3300045051 Ga0451576_0000110 Ga0451576_0000110_132357_133661 424
54 3300006914 Ga0075436_100005162 Ga0075436_1000051626 425
55 3300031344 Ga0265316_10027188 Ga0265316_100271883 425
56 3300044712 Ga0453684_0069457 Ga0453684_0069457_173_1486 425
57 3300050514 nmdc:mga08x19_3795_c1 nmdc:mga08x19_3795_c1_4906_6216 425
58 3300031344 Ga0265316_10003246 Ga0265316_100032469 426
59 3300044712 Ga0453684_0000030 Ga0453684_0000030_599483_600799 426
60 3300042876 Ga0451577_0069703 Ga0451577_0069703_1805_3118 427
61 3300028800 Ga0265338_10017175 Ga0265338_100171752 428
62 3300031250 Ga0265331_10000365 Ga0265331_100003657 428
63 3300031251 Ga0265327_10000828 Ga0265327_100008287 428
64 3300049776 Ga0501280_000004 Ga0501280_000004_83110_84432 428
65 3300028800 Ga0265338_10000002 Ga0265338_10000002795 431
66 3300028800 Ga0265338_10051985 Ga0265338_100519853 431
67 3300028800 Ga0265338_10054649 Ga0265338_100546492 431
68 3300028800 Ga0265338_10174354 Ga0265338_101743541 431
69 3300029957 Ga0265324_10018367 Ga0265324_100183672 431
70 3300037418 Ga0395900_0001560 Ga0395900_0001560_13888_15186 431
71 3300037466 Ga0395898_0017849 Ga0395898_0017849_1839_3137 431
72 3300025972 Ga0207668_10146189 Ga0207668_101461892 435
73 3300005530 Ga0070679_100020236 Ga0070679_1000202365 436
74 3300031235 Ga0265330_10000979 Ga0265330_100009796 437
75 3300031344 Ga0265316_10003716 Ga0265316_100037163 437
76 3300005327 Ga0070658_10013674 Ga0070658_100136743 438
77 3300013105 Ga0157369_10204749 Ga0157369_102047492 438
78 3300005614 Ga0068856_100088443 Ga0068856_1000884432 441
79 3300026078 Ga0207702_10052140 Ga0207702_100521402 441
80 3300005341 Ga0070691_10013975 Ga0070691_100139755 442
81 3300009177 Ga0105248_10190921 Ga0105248_101909211 442
82 3300009993 Ga0105028_100929 Ga0105028_1009296 442
83 3300038443 Ga0395901_0008089 Ga0395901_0008089_677_2008 442
84 3300005535 Ga0070684_100141096 Ga0070684_1001410962 443
85 3300005356 Ga0070674_100000707 Ga0070674_1000007078 446
86 3300005466 Ga0070685_10003202 Ga0070685_100032025 446
87 3300005548 Ga0070665_100049876 Ga0070665_1000498763 446
88 3300025937 Ga0207669_10017779 Ga0207669_100177792 446
89 3300028379 Ga0268266_10004740 Ga0268266_100047407 446
90 3300003323 rootH1_10256394 rootH1_102563941 448
91 3300005327 Ga0070658_10000012 Ga0070658_10000012279 448
92 3300005339 Ga0070660_100113121 Ga0070660_1001131212 448
93 3300005355 Ga0070671_100005518 Ga0070671_1000055187 448
94 3300005364 Ga0070673_100000224 Ga0070673_1000002247 448
95 3300005456 Ga0070678_100010909 Ga0070678_1000109096 448
96 3300005459 Ga0068867_100033937 Ga0068867_1000339372 448
97 3300005466 Ga0070685_10000215 Ga0070685_1000021514 448
98 3300005543 Ga0070672_100003068 Ga0070672_10000306810 448
99 3300009093 Ga0105240_10000003 Ga0105240_10000003817 448
100 3300009098 Ga0105245_10001120 Ga0105245_1000112015 448
101 3300009148 Ga0105243_10000001 Ga0105243_10000001474 448
102 3300009176 Ga0105242_10000135 Ga0105242_1000013524 448
103 3300009545 Ga0105237_10021926 Ga0105237_100219263 448
104 3300010375 Ga0105239_10012962 Ga0105239_100129626 448
105 3300013296 Ga0157374_10000195 Ga0157374_100001959 448
106 3300013297 Ga0157378_10018720 Ga0157378_100187206 448
107 3300025909 Ga0207705_10000056 Ga0207705_10000056145 448
108 3300025913 Ga0207695_10000005 Ga0207695_10000005827 448
109 3300025934 Ga0207686_10000001 Ga0207686_10000001668 448
110 3300025935 Ga0207709_10000002 Ga0207709_10000002786 448
111 3300025960 Ga0207651_10000167 Ga0207651_100001677 448
112 3300026089 Ga0207648_10034257 Ga0207648_100342572 448
113 3300026121 Ga0207683_10012604 Ga0207683_100126049 448
114 3300037471 Ga0395905_0000238 Ga0395905_0000238_39510_40862 448

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03129

HGTP_anticodon

Anticodon binding domain

371

459

0.93

PF13393

tRNA-synt_His

Histidyl-tRNA synthetase

15

338

0.85

PF00587

tRNA-synt_2b

tRNA synthetase class II core domain (G, H, P, S and T)

71

312

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
1wu7-assembly1.cif.gz_B crystal structure of histidyl-trna synthetase from thermoplasma acidophilum 0.9137 4 432
1wu7-assembly1.cif.gz_B crystal structure of histidyl-trna synthetase from thermoplasma acidophilum 0.9096 4 432
3hri-assembly3.cif.gz_F histidyl-trna synthetase (apo) from trypanosoma brucei 0.8988 2 419
3hri-assembly3.cif.gz_F histidyl-trna synthetase (apo) from trypanosoma brucei 0.8897 2 419
1qe0-assembly1.cif.gz_B crystal structure of apo s. aureus histidyl-trna synthetase 0.8808 3 429
ID Description Score Start End Superfamily
af_F4KFB0_66_263_3.30.930.10 Alpha Beta;2-Layer Sandwich;BirA Bifunctional Protein; domain 2;Bira Bifunctional Protein; Domain 2 0.9475 2 197 3.30.930.10
af_A4I591_46_375_3.30.930.10 Alpha Beta;2-Layer Sandwich;BirA Bifunctional Protein; domain 2;Bira Bifunctional Protein; Domain 2 0.9352 1 333 3.30.930.10
af_A4I591_46_375_3.30.930.10 Alpha Beta;2-Layer Sandwich;BirA Bifunctional Protein; domain 2;Bira Bifunctional Protein; Domain 2 0.9297 1 333 3.30.930.10
3hriF01 Alpha Beta;2-Layer Sandwich;BirA Bifunctional Protein; domain 2;Bira Bifunctional Protein; Domain 2 0.9283 2 337 3.30.930.10
3hriF01 Alpha Beta;2-Layer Sandwich;BirA Bifunctional Protein; domain 2;Bira Bifunctional Protein; Domain 2 0.9252 2 337 3.30.930.10
ID Description Score Start End GO Terms
AF-A0A1F7QRE5-F1-model_v4 Histidine--tRNA ligase (EC 6.1.1.21) (Histidyl-tRNA synthetase) (HisRS) 0.9694 1 432 GO:0004821
GO:0005524
GO:0005737
GO:0006427
AF-A0A847EE70-F1-model_v4 Histidine--tRNA ligase (EC 6.1.1.21) (Histidyl-tRNA synthetase) (HisRS) 0.9679 1 433 GO:0004821
GO:0005524
GO:0005737
GO:0006427
AF-A0A1F7QRE5-F1-model_v4 Histidine--tRNA ligase (EC 6.1.1.21) (Histidyl-tRNA synthetase) (HisRS) 0.9648 1 432 GO:0004821
GO:0005524
GO:0005737
GO:0006427
AF-A0A258FU81-F1-model_v4 Histidine--tRNA ligase (EC 6.1.1.21) (Histidyl-tRNA synthetase) (HisRS) 0.9607 1 448 GO:0004821
GO:0005524
GO:0005737
GO:0006427
AF-A0A258FU81-F1-model_v4 Histidine--tRNA ligase (EC 6.1.1.21) (Histidyl-tRNA synthetase) (HisRS) 0.9544 1 448 GO:0004821
GO:0005524
GO:0005737
GO:0006427

Feature Viewer

pLDDT pTM Quality
90.75 0.88 High
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Predicted Structure (AlphaFold2)

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