F092792

General Info

Members Datasets Scaffolds Average Seq Length
117 94 115 301

Family's Representative Sequence

Representative Sequence 3300010375|Ga0105239_10054422|Ga0105239_100544222
Length 333
Sequence VLRNDDGFNAEDRKPILSTQHSALSTPLLVIAGPTGTGKSDLALRLALALKGEIVNYDSVQIYRGFDIGSAKPSVATRAIVPHHLFDIVEATDEFNAADYARMARDTCASIDARGKRAILAGGTFFYLRALLSGLPEMPGRNEAVRERLREIAQKPRGPERLHRWLSKIDPQSGRKIALADRHRVERALEVWVTSGRPISEWERPTAVAEELPAIKIALTLERPRLVEILDARVEAMYAGGLVDETRELLRQFPRASRPFGTIGYAEAAAVVAGEMLLPEAIAETKRRTRAYAKRQMTWLRSERNMHWIDAGNRDQAFAAAMRLIDQAIEGDS

Samples

Sample ID Description Type Environment
1 2831426010 Nostoc sp. 106C Isolate Unclassified
2 2849660919 Nostoc sp. T09 Isolate Unclassified
3 3300001991 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2 Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
6 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
7 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
8 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
9 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
10 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
11 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
12 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
13 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
14 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
15 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
16 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
17 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
18 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
19 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
20 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
21 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
22 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
23 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
24 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
25 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
26 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
27 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
28 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
29 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
30 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
31 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
32 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
33 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
34 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
35 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
36 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
37 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
38 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
39 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
40 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
41 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
43 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
44 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
45 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
46 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
47 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
48 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
49 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
50 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
51 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
52 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
53 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
76 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
77 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
78 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
79 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
80 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
81 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
82 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
83 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
84 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
85 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
86 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
87 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
88 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
89 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
90 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
91 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
92 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
93 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
94 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.29
Metatranscriptomes 0
Isolates 1.71

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 94.02
Stem 0
Stem Tuber 0
Unclassified 5.98

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24743J22301_10020435 3300001991 Bacteria 1261
2 Ga0070683_100000087 3300005329 Bacteria 61918
3 Ga0070683_100207870 3300005329 Bacteria 1859
4 Ga0070670_100000078 3300005331 Bacteria 93173
5 Ga0068869_100029580 3300005334 Bacteria 3839
6 Ga0070680_100021865 3300005336 Bacteria 5088
7 Ga0070682_100000035 3300005337 Bacteria 150016
8 Ga0068868_100000486 3300005338 Bacteria 26415
9 Ga0068868_100001059 3300005338 Bacteria 18838
10 Ga0070689_100002999 3300005340 Bacteria 11103
11 Ga0070689_100066109 3300005340 Bacteria 2817
12 Ga0070689_100485463 3300005340 Bacteria 1056
13 Ga0070687_100054227 3300005343 Bacteria 2088
14 Ga0070692_10002336 3300005345 Bacteria 7321
15 Ga0070675_100000019 3300005354 Bacteria 173624
16 Ga0070673_100041856 3300005364 Bacteria 3527
17 Ga0070659_100106693 3300005366 Bacteria 2258
18 Ga0070713_100068961 3300005436 Bacteria 2981
19 Ga0070713_100241918 3300005436 Bacteria 1644
20 Ga0070700_100000023 3300005441 Bacteria 129791
21 Ga0070708_100005261 3300005445 Bacteria 10246
22 Ga0070708_100476135 3300005445 Bacteria 1178
23 Ga0068867_100240548 3300005459 Bacteria 1468
24 Ga0070706_100273104 3300005467 Unclassified 1577
25 Ga0070698_100055817 3300005471 Bacteria 4003
26 Ga0070699_100131601 3300005518 Unclassified 2205
27 Ga0070699_100162883 3300005518 Unclassified 1974
28 Ga0070684_100000320 3300005535 Bacteria 33167
29 Ga0070672_100002429 3300005543 Bacteria 11813
30 Ga0070693_100191605 3300005547 Bacteria 1322
31 Ga0068854_100041024 3300005578 Bacteria 3269
32 Ga0070702_100136660 3300005615 Bacteria 1556
33 Ga0070702_100268610 3300005615 Bacteria 1165
34 Ga0068864_100000007 3300005618 Bacteria 392187
35 Ga0068858_100002819 3300005842 Bacteria 17480
36 Ga0068858_100141665 3300005842 Bacteria 2257
37 Ga0070717_10000062 3300006028 Bacteria 91165
38 Ga0070716_100022540 3300006173 Unclassified 3330
39 Ga0070716_100054861 3300006173 Bacteria 2278
40 Ga0075431_100068453 3300006847 Bacteria 3664
41 Ga0075434_100086880 3300006871 Bacteria 3128
42 Ga0075429_100040250 3300006880 Bacteria 4068
43 Ga0075436_100008313 3300006914 Bacteria 7099
44 Ga0075435_100000755 3300007076 Bacteria 20088
45 Ga0105244_10039142 3300009036 Bacteria 2469
46 Ga0105240_10166823 3300009093 Bacteria 2611
47 Ga0111539_10000003 3300009094 Bacteria 880006
48 Ga0105245_10002925 3300009098 Bacteria 15329
49 Ga0105245_10003234 3300009098 Bacteria 14596
50 Ga0105245_10194549 3300009098 Bacteria 1944
51 Ga0114129_10030851 3300009147 Bacteria 7581
52 Ga0114129_10897198 3300009147 Unclassified 1123
53 Ga0105242_10001031 3300009176 Bacteria 21927
54 Ga0105238_10000041 3300009551 Bacteria 155330
55 Ga0105239_10054422 3300010375 Bacteria 4389
56 Ga0157369_10000223 3300013105 Bacteria 78341
57 Ga0157374_10000006 3300013296 Bacteria 640284
58 Ga0157378_10060371 3300013297 Bacteria 3384
59 Ga0157375_10000003 3300013308 Bacteria 476325
60 Ga0157375_10000298 3300013308 Bacteria 44971
61 Ga0157380_10010894 3300014326 Bacteria 6556
62 Ga0157377_10000011 3300014745 Bacteria 305350
63 Ga0157377_10001245 3300014745 Bacteria 10887
64 Ga0157376_10000002 3300014969 Bacteria 684532
65 Ga0213876_10000018 3300021384 Bacteria 282299
66 Ga0213876_10000037 3300021384 Bacteria 185653
67 Ga0207695_10118420 3300025913 Bacteria 2619
68 Ga0207660_10009819 3300025917 Bacteria 6197
69 Ga0207662_10005086 3300025918 Bacteria 6973
70 Ga0207646_10125481 3300025922 Unclassified 2308
71 Ga0207694_10000001 3300025924 Bacteria 4078485
72 Ga0207650_10000476 3300025925 Bacteria 33497
73 Ga0207659_10000001 3300025926 Bacteria 660958
74 Ga0207687_10001852 3300025927 Bacteria 14549
75 Ga0207687_10004289 3300025927 Bacteria 9525
76 Ga0207700_10073840 3300025928 Bacteria 2635
77 Ga0207700_10095274 3300025928 Bacteria 2361
78 Ga0207670_10001615 3300025936 Bacteria 11758
79 Ga0207704_10089565 3300025938 Bacteria 2016
80 Ga0207665_10045305 3300025939 Bacteria 2945
81 Ga0207691_10010468 3300025940 Bacteria 8895
82 Ga0207689_10311940 3300025942 Bacteria 1304
83 Ga0207661_10000091 3300025944 Bacteria 59700
84 Ga0207661_10272289 3300025944 Bacteria 1511
85 Ga0207651_10033340 3300025960 Bacteria 3321
86 Ga0207640_10008368 3300025981 Bacteria 5748
87 Ga0207677_10000001 3300026023 Bacteria 534789
88 Ga0207677_10000300 3300026023 Bacteria 36603
89 Ga0207703_10000249 3300026035 Bacteria 60645
90 Ga0207639_10000013 3300026041 Bacteria 293084
91 Ga0207708_10000027 3300026075 Bacteria 166457
92 Ga0207676_10000015 3300026095 Bacteria 329100
93 Ga0207428_10000001 3300027907 Bacteria 1034622
94 Ga0316583_10000317 3300032133 Bacteria 13570
95 Ga0373932_0001986 3300035112 Bacteria 5395
96 Ga0373943_0006588 3300035170 Bacteria 5207
97 Ga0316574_0007694 3300035398 Bacteria 5923
98 Ga0316574_0031394 3300035398 Bacteria 3222
99 Ga0316584_0361871 3300036712 Bacteria 1040
100 Ga0436364_0466649 3300037853 Bacteria 1163
101 Ga0436365_0161434 3300039437 Bacteria 117675
102 Ga0436365_0306091 3300039437 Bacteria 89501
103 Ga0436362_0795565 3300039453 Bacteria 22967
104 Ga0436362_1305298 3300039453 Bacteria 131464
105 Ga0453683_0051515 3300044673 Unclassified 2578
106 Ga0453684_0003793 3300044712 Bacteria 33351
107 Ga0501073_0018069 3300049589 Bacteria 5099
108 Ga0501080_0002393 3300049742 Bacteria 16372
109 nmdc:mga06r32_93805_c1 3300050510 Bacteria 2936
110 nmdc:mga08y16_1_c1 3300050511 Bacteria 1034622
111 nmdc:mga0n895_322785_c1 3300050512 Bacteria 1565
112 nmdc:mga0rr50_161_c1 3300050513 Bacteria 36290
113 nmdc:mga08x19_2411_c1 3300050514 Bacteria 11341
114 Ga0495655_0000537 3300053083 Bacteria 6220
115 Ga0495595_0141063 3300053084 Unclassified 1182

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005343 Ga0070687_100054227 Ga0070687_1000542272 265
2 3300006173 Ga0070716_100022540 Ga0070716_1000225403 265
3 3300025918 Ga0207662_10005086 Ga0207662_100050861 265
4 3300014745 Ga0157377_10001245 Ga0157377_100012456 269
5 3300009098 Ga0105245_10002925 Ga0105245_100029252 270
6 3300025927 Ga0207687_10004289 Ga0207687_1000428910 270
7 3300006914 Ga0075436_100008313 Ga0075436_1000083135 273
8 3300007076 Ga0075435_100000755 Ga0075435_1000007556 273
9 3300044673 Ga0453683_0051515 Ga0453683_0051515_42_959 273
10 3300050513 nmdc:mga0rr50_161_c1 nmdc:mga0rr50_161_c1_30763_31650 273
11 3300050514 nmdc:mga08x19_2411_c1 nmdc:mga08x19_2411_c1_6419_7306 273
12 3300035170 Ga0373943_0006588 Ga0373943_0006588_3369_4313 274
13 3300005340 Ga0070689_100485463 Ga0070689_1004854631 276
14 3300005436 Ga0070713_100241918 Ga0070713_1002419182 276
15 3300025928 Ga0207700_10095274 Ga0207700_100952743 276
16 3300005547 Ga0070693_100191605 Ga0070693_1001916052 277
17 3300049589 Ga0501073_0018069 Ga0501073_0018069_430_1371 279
18 3300005329 Ga0070683_100000087 Ga0070683_10000008734 280
19 3300005338 Ga0068868_100000486 Ga0068868_10000048619 280
20 3300005535 Ga0070684_100000320 Ga0070684_10000032034 280
21 3300025944 Ga0207661_10000091 Ga0207661_1000009133 280
22 3300026023 Ga0207677_10000001 Ga0207677_10000001345 280
23 3300049742 Ga0501080_0002393 Ga0501080_0002393_4107_5048 281
24 iso_pu_bacteria 2849660919 2849661840 281
25 3300005578 Ga0068854_100041024 Ga0068854_1000410242 282
26 3300025981 Ga0207640_10008368 Ga0207640_100083682 282
27 3300036712 Ga0316584_0361871 Ga0316584_0361871_111_1028 282
28 3300053083 Ga0495655_0000537 Ga0495655_0000537_3917_4795 282
29 3300025922 Ga0207646_10125481 Ga0207646_101254812 283
30 3300009094 Ga0111539_10000003 Ga0111539_1000000328 284
31 3300027907 Ga0207428_10000001 Ga0207428_10000001179 284
32 3300050511 nmdc:mga08y16_1_c1 nmdc:mga08y16_1_c1_855878_856789 284
33 3300013308 Ga0157375_10000298 Ga0157375_1000029818 285
34 3300037853 Ga0436364_0466649 Ga0436364_0466649_221_1138 285
35 iso_pu_bacteria 2831426010 2831433566 285
36 3300035398 Ga0316574_0007694 Ga0316574_0007694_1279_2196 286
37 3300035398 Ga0316574_0031394 Ga0316574_0031394_181_1176 286
38 3300005436 Ga0070713_100068961 Ga0070713_1000689612 287
39 3300005441 Ga0070700_100000023 Ga0070700_10000002397 287
40 3300005445 Ga0070708_100476135 Ga0070708_1004761352 287
41 3300005471 Ga0070698_100055817 Ga0070698_1000558173 287
42 3300005518 Ga0070699_100131601 Ga0070699_1001316013 287
43 3300005615 Ga0070702_100136660 Ga0070702_1001366601 287
44 3300006028 Ga0070717_10000062 Ga0070717_1000006289 287
45 3300025928 Ga0207700_10073840 Ga0207700_100738402 287
46 3300026075 Ga0207708_10000027 Ga0207708_10000027128 287
47 3300005334 Ga0068869_100029580 Ga0068869_1000295802 288
48 3300025942 Ga0207689_10311940 Ga0207689_103119402 288
49 3300032133 Ga0316583_10000317 Ga0316583_1000031713 288
50 3300035112 Ga0373932_0001986 Ga0373932_0001986_4196_5116 288
51 3300009093 Ga0105240_10166823 Ga0105240_101668233 290
52 3300025913 Ga0207695_10118420 Ga0207695_101184202 290
53 3300025938 Ga0207704_10089565 Ga0207704_100895652 290
54 3300026041 Ga0207639_10000013 Ga0207639_10000013239 290
55 3300005331 Ga0070670_100000078 Ga0070670_10000007810 291
56 3300005338 Ga0068868_100001059 Ga0068868_1000010593 291
57 3300009147 Ga0114129_10030851 Ga0114129_100308517 291
58 3300009551 Ga0105238_10000041 Ga0105238_10000041120 291
59 3300013105 Ga0157369_10000223 Ga0157369_1000022340 291
60 3300013296 Ga0157374_10000006 Ga0157374_1000000649 291
61 3300014745 Ga0157377_10000011 Ga0157377_10000011136 291
62 3300021384 Ga0213876_10000037 Ga0213876_10000037158 291
63 3300025924 Ga0207694_10000001 Ga0207694_100000013349 291
64 3300025925 Ga0207650_10000476 Ga0207650_1000047610 291
65 3300026023 Ga0207677_10000300 Ga0207677_1000030013 291
66 3300039437 Ga0436365_0161434 Ga0436365_0161434_36813_37751 291
67 3300039453 Ga0436362_1305298 Ga0436362_1305298_36813_37751 291
68 3300005336 Ga0070680_100021865 Ga0070680_1000218652 292
69 3300005354 Ga0070675_100000019 Ga0070675_10000001921 292
70 3300006880 Ga0075429_100040250 Ga0075429_1000402503 292
71 3300009036 Ga0105244_10039142 Ga0105244_100391422 292
72 3300009147 Ga0114129_10897198 Ga0114129_108971981 292
73 3300014969 Ga0157376_10000002 Ga0157376_10000002611 292
74 3300021384 Ga0213876_10000018 Ga0213876_1000001869 292
75 3300025917 Ga0207660_10009819 Ga0207660_100098193 292
76 3300025926 Ga0207659_10000001 Ga0207659_10000001166 292
77 3300039437 Ga0436365_0306091 Ga0436365_0306091_6194_7213 292
78 3300039453 Ga0436362_0795565 Ga0436362_0795565_12779_13798 292
79 3300006847 Ga0075431_100068453 Ga0075431_1000684533 293
80 3300006871 Ga0075434_100086880 Ga0075434_1000868803 293
81 3300009176 Ga0105242_10001031 Ga0105242_100010311 293
82 3300050510 nmdc:mga06r32_93805_c1 nmdc:mga06r32_93805_c1_612_1529 293
83 3300050512 nmdc:mga0n895_322785_c1 nmdc:mga0n895_322785_c1_644_1555 293
84 3300005340 Ga0070689_100066109 Ga0070689_1000661093 294
85 3300005329 Ga0070683_100207870 Ga0070683_1002078703 295
86 3300005337 Ga0070682_100000035 Ga0070682_10000003545 295
87 3300005340 Ga0070689_100002999 Ga0070689_1000029993 295
88 3300005364 Ga0070673_100041856 Ga0070673_1000418563 295
89 3300005366 Ga0070659_100106693 Ga0070659_1001066932 295
90 3300005445 Ga0070708_100005261 Ga0070708_1000052619 295
91 3300005459 Ga0068867_100240548 Ga0068867_1002405482 295
92 3300005467 Ga0070706_100273104 Ga0070706_1002731042 295
93 3300005518 Ga0070699_100162883 Ga0070699_1001628832 295
94 3300005543 Ga0070672_100002429 Ga0070672_1000024296 295
95 3300005615 Ga0070702_100268610 Ga0070702_1002686101 295
96 3300005618 Ga0068864_100000007 Ga0068864_10000000775 295
97 3300005842 Ga0068858_100002819 Ga0068858_1000028194 295
98 3300005842 Ga0068858_100141665 Ga0068858_1001416653 295
99 3300006173 Ga0070716_100054861 Ga0070716_1000548612 295
100 3300009098 Ga0105245_10003234 Ga0105245_100032343 295
101 3300009098 Ga0105245_10194549 Ga0105245_101945492 295
102 3300010375 Ga0105239_10054422 Ga0105239_100544222 295
103 3300013297 Ga0157378_10060371 Ga0157378_100603713 295
104 3300013308 Ga0157375_10000003 Ga0157375_10000003309 295
105 3300014326 Ga0157380_10010894 Ga0157380_100108945 295
106 3300025927 Ga0207687_10001852 Ga0207687_1000185212 295
107 3300025936 Ga0207670_10001615 Ga0207670_100016153 295
108 3300025939 Ga0207665_10045305 Ga0207665_100453053 295
109 3300025940 Ga0207691_10010468 Ga0207691_100104686 295
110 3300025944 Ga0207661_10272289 Ga0207661_102722892 295
111 3300025960 Ga0207651_10033340 Ga0207651_100333403 295
112 3300026035 Ga0207703_10000249 Ga0207703_1000024926 295
113 3300026095 Ga0207676_10000015 Ga0207676_10000015255 295
114 3300044712 Ga0453684_0003793 Ga0453684_0003793_11382_12317 295
115 3300053084 Ga0495595_0141063 Ga0495595_0141063_144_1088 295
116 3300001991 JGI24743J22301_10020435 JGI24743J22301_100204351 296
117 3300005345 Ga0070692_10002336 Ga0070692_100023365 296

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01715

IPPT

IPP transferase

61

303

0.97

PF01745

IPT

Isopentenyl transferase

26

134

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
2qgn-assembly1.cif.gz_A crystal structure of trna isopentenylpyrophosphate transferase (bh2366) from bacillus halodurans, northeast structural genomics consortium target bhr41. 0.8851 1 281
2zm5-assembly1.cif.gz_A crystal structure of trna modification enzyme miaa in the complex with trna(phe) 0.8755 1 295
2zm5-assembly1.cif.gz_A crystal structure of trna modification enzyme miaa in the complex with trna(phe) 0.87 1 295
3crr-assembly1.cif.gz_A structure of trna dimethylallyltransferase: rna modification through a channel 0.8511 1 294
3crr-assembly1.cif.gz_A structure of trna dimethylallyltransferase: rna modification through a channel 0.8269 1 294
ID Description Score Start End Superfamily
af_Q8I0X4_385_453_1.10.20.140 Mainly Alpha;Orthogonal Bundle;Histone, subunit A; 0.992 135 177 1.10.20.140
3crrA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.956 1 111 3.40.50.300
3exaA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9436 1 109 3.40.50.300
2zm5B01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9363 3 278 3.40.50.300
3d3qB03 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 0.9221 201 276 1.10.287.890
ID Description Score Start End GO Terms
AF-A0A7V1JL28-F1-model_v4 tRNA (Adenosine(37)-N6)-dimethylallyltransferase MiaA 0.9935 4 98 GO:0005524
GO:0006400
GO:0052381
AF-A0A496JYQ4-F1-model_v4 deleted 0.9798 1 100
AF-A0A0K8TFV6-F1-model_v4 tRNA dimethylallyltransferase, mitochondrial 0.9794 2 108 GO:0005524
GO:0005739
GO:0006400
GO:0052381
AF-A0A4Q5SZM1-F1-model_v4 tRNA (Adenosine(37)-N6)-dimethylallyltransferase MiaA 0.9701 1 110 GO:0005524
GO:0006400
GO:0052381
AF-A0A0F9T3R4-F1-model_v4 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.9635 1 119 GO:0005524
GO:0006400
GO:0052381

Feature Viewer

pLDDT pTM Quality
87.26 0.79 High
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Predicted Structure (AlphaFold2)

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