F092920

General Info

Members Datasets Scaffolds Average Seq Length
117 95 117 494

Family's Representative Sequence

Representative Sequence 3300013307|Ga0157372_10001749|Ga0157372_100017499
Length 524
Sequence MPALVKLRLVLPVLLVALAAGLVAGCGGSGSDSSGGADPASVMPAEAPVYLDFTVRPEGETKTNIEALAKSIAGVDDLGGLILEELEQSASEDGEEFDYEKEVEPWLGEEGGLFLQEYVEGDFEGVGAAIQVSDEGEAQDFLEKQVGSDSEPAKKGSYEGVDFWVEAEDGTTLGVFDGLIVLAEDEATFKSMVDASEGENLSENEDFTSAIDSVPDESAADVFVDIGALIEEAGNEIDSETQLFLDTVGIEPKEATAVASLIPGSDNVEIDVSTNLSGDNPPSGDASELLGSLPGTSVGAFASAEFGKRFNESIDKIDEQGLPGQVPPHQLKAGLKEAGIDLESIAGSIGDAGAYVTGNSESSLGGALVLTTDSATQAKNTVANIGLFLRSSGTPGITRITEGASGFSIRSPDLGRQPIVVVAKGSRIAIGYGLAPTLASFEESGQTLADSPAYKEAVSALGDTPISAFVDGPSALKLASALVPSDDEGFKEAKPYLTKVDYLALGSEASGDLAVAKLIVGVGK

Samples

Sample ID Description Type Environment
1 3300002074 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S1 Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
4 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
5 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
6 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
7 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
8 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
9 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
10 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
11 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
12 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
13 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
14 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
15 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
16 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
17 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
18 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
19 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
20 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
21 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
22 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
23 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
24 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
25 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
26 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
27 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
28 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
29 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
30 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
31 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
32 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
33 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
34 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
35 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
36 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
58 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
59 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
60 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
61 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
62 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
63 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
64 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
65 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
66 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
67 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
68 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
69 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
70 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
71 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
72 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
73 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
74 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
75 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
76 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
77 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
78 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
79 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
80 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
81 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
82 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
83 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
84 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
85 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
86 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
87 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
88 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
89 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
90 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
91 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
92 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
93 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
94 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
95 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.85
Nodule 0
Rhizoplane 11.11
Rhizosphere 88.03
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24748J21848_1000191 3300002074 Bacteria 7872
2 Ga0070683_100005586 3300005329 Bacteria 10503
3 Ga0070683_100012615 3300005329 Bacteria 7347
4 Ga0070682_100000026 3300005337 Bacteria 191388
5 Ga0068868_100001800 3300005338 Bacteria 14722
6 Ga0070691_10000004 3300005341 Bacteria 80156
7 Ga0070661_100001449 3300005344 Bacteria 16481
8 Ga0070675_100000050 3300005354 Bacteria 72016
9 Ga0070674_100000002 3300005356 Bacteria 271088
10 Ga0070688_100000077 3300005365 Bacteria 48743
11 Ga0070667_100013639 3300005367 Bacteria 6715
12 Ga0070713_100000135 3300005436 Bacteria 48487
13 Ga0070711_100083314 3300005439 Bacteria 2285
14 Ga0070678_100014437 3300005456 Bacteria 4985
15 Ga0070685_10000010 3300005466 Bacteria 146946
16 Ga0070684_100004420 3300005535 Bacteria 10697
17 Ga0070684_100028439 3300005535 Bacteria 4729
18 Ga0068853_100026109 3300005539 Bacteria 4904
19 Ga0070672_100000005 3300005543 Bacteria 121014
20 Ga0068854_100000082 3300005578 Bacteria 68340
21 Ga0068852_100064549 3300005616 Bacteria 3192
22 Ga0068864_100000043 3300005618 Bacteria 162928
23 Ga0068866_10000296 3300005718 Bacteria 23705
24 Ga0068851_10000141 3300005834 Bacteria 38800
25 Ga0068863_100000261 3300005841 Bacteria 55053
26 Ga0068863_100101586 3300005841 Bacteria 2734
27 Ga0068858_100000046 3300005842 Bacteria 127519
28 Ga0081540_1049371 3300005983 Bacteria 2099
29 Ga0070712_100007502 3300006175 Bacteria 6812
30 Ga0105247_10025659 3300009101 Bacteria 3556
31 Ga0105241_10045737 3300009174 Bacteria 3323
32 Ga0105242_10000063 3300009176 Bacteria 74721
33 Ga0105242_10030801 3300009176 Bacteria 4285
34 Ga0157370_10040264 3300013104 Bacteria 4512
35 Ga0157370_10043793 3300013104 Bacteria 4305
36 Ga0157374_10116574 3300013296 Bacteria 2574
37 Ga0157378_10015261 3300013297 Bacteria 6727
38 Ga0157378_10019758 3300013297 Bacteria 5924
39 Ga0157372_10001749 3300013307 Bacteria 23545
40 Ga0157375_10000365 3300013308 Bacteria 41388
41 Ga0157375_10105211 3300013308 Bacteria 2912
42 Ga0163161_10029785 3300017792 Bacteria 3880
43 Ga0207656_10000656 3300025321 Bacteria 11303
44 Ga0207642_10000173 3300025899 Bacteria 18494
45 Ga0207710_10011560 3300025900 Bacteria 3715
46 Ga0207693_10001350 3300025915 Bacteria 21696
47 Ga0207649_10000556 3300025920 Bacteria 25712
48 Ga0207659_10000055 3300025926 Bacteria 74252
49 Ga0207700_10000003 3300025928 Bacteria 500797
50 Ga0207686_10000230 3300025934 Bacteria 42566
51 Ga0207686_10066832 3300025934 Bacteria 2297
52 Ga0207669_10000029 3300025937 Bacteria 88351
53 Ga0207691_10000028 3300025940 Bacteria 121090
54 Ga0207661_10000858 3300025944 Bacteria 19953
55 Ga0207661_10001136 3300025944 Bacteria 17743
56 Ga0207668_10050223 3300025972 Bacteria 2873
57 Ga0207640_10000054 3300025981 Bacteria 95136
58 Ga0207658_10009339 3300025986 Bacteria 6653
59 Ga0207677_10001225 3300026023 Bacteria 13820
60 Ga0207703_10000042 3300026035 Bacteria 161459
61 Ga0207639_10048359 3300026041 Bacteria 3219
62 Ga0207641_10000062 3300026088 Bacteria 159982
63 Ga0207641_10005248 3300026088 Bacteria 11075
64 Ga0207676_10000042 3300026095 Bacteria 163475
65 Ga0207683_10011240 3300026121 Bacteria 7632
66 Ga0207698_10045295 3300026142 Bacteria 3313
67 Ga0307415_100056011 3300032126 Unclassified 2701
68 Ga0466958_0047476 3300045836 Bacteria 2592
69 Ga0466967_0000002 3300045976 Bacteria 219994
70 Ga0495629_0016047 3300046459 Bacteria 5382
71 Ga0495629_0027420 3300046459 Bacteria 4043
72 Ga0495653_0082043 3300046463 Bacteria 2381
73 Ga0495653_0133116 3300046463 Bacteria 1757
74 Ga0495606_0000017 3300046507 Bacteria 284549
75 Ga0495608_0000013 3300046511 Bacteria 228481
76 Ga0495608_0022576 3300046511 Bacteria 4315
77 Ga0495628_0044493 3300046516 Bacteria 3532
78 Ga0495630_0000032 3300046517 Bacteria 134425
79 Ga0495630_0091311 3300046517 Bacteria 2301
80 Ga0495587_0001456 3300046536 Bacteria 15786
81 Ga0495667_0079198 3300046559 Bacteria 2136
82 Ga0495635_0119447 3300046663 Bacteria 1798
83 Ga0495588_0000073 3300046674 Bacteria 219005
84 Ga0495657_0000003 3300046675 Bacteria 279680
85 Ga0495647_0001958 3300046681 Bacteria 6421
86 Ga0495613_0000233 3300046689 Bacteria 53074
87 Ga0495624_0000400 3300046690 Bacteria 34373
88 Ga0495660_0061024 3300046810 Bacteria 2024
89 Ga0495604_0006007 3300047317 Bacteria 9641
90 Ga0495604_0030722 3300047317 Bacteria 4265
91 Ga0495672_0037143 3300047320 Bacteria 2984
92 Ga0495676_0052411 3300047321 Bacteria 3257
93 Ga0495675_0000002 3300047444 Bacteria 216469
94 Ga0495684_0050586 3300047471 Bacteria 3172
95 Ga0495602_0000034 3300048088 Bacteria 140722
96 Ga0496104_0000230 3300048907 Bacteria 49225
97 Ga0496104_0045880 3300048907 Bacteria 4112
98 Ga0496105_0000051 3300048908 Bacteria 90365
99 Ga0496106_0000042 3300048909 Bacteria 106662
100 Ga0496107_0044471 3300048910 Bacteria 3192
101 Ga0496108_0000537 3300048911 Bacteria 29610
102 Ga0496108_0104662 3300048911 Bacteria 2415
103 Ga0496109_0000221 3300048912 Bacteria 56054
104 Ga0496109_0003599 3300048912 Bacteria 12942
105 Ga0496110_0000052 3300048913 Bacteria 58549
106 Ga0496111_0000209 3300048914 Bacteria 27572
107 Ga0496112_0001298 3300048915 Bacteria 18986
108 Ga0496113_0000065 3300048916 Bacteria 45403
109 Ga0501042_0001883 3300049578 Bacteria 12596
110 Ga0495601_0000029 3300053077 Bacteria 111437
111 Ga0495601_0005883 3300053077 Bacteria 7151
112 Ga0495601_0026982 3300053077 Bacteria 3549
113 Ga0495595_0000007 3300053084 Bacteria 228504
114 Ga0495619_0000001 3300053085 Bacteria 586054
115 Ga0495619_0000026 3300053085 Bacteria 167387
116 Ga0495619_0000506 3300053085 Bacteria 25971
117 Ga0500566_0004549 3300053094 Bacteria 8280

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046511 Ga0495608_0022576 Ga0495608_0022576_1190_2704 424
2 3300046516 Ga0495628_0044493 Ga0495628_0044493_1546_3060 424
3 3300005842 Ga0068858_100000046 Ga0068858_10000004649 443
4 3300026035 Ga0207703_10000042 Ga0207703_1000004214 443
5 3300045976 Ga0466967_0000002 Ga0466967_0000002_6580_8154 445
6 3300005983 Ga0081540_1049371 Ga0081540_10493712 452
7 3300005616 Ga0068852_100064549 Ga0068852_1000645492 463
8 3300026142 Ga0207698_10045295 Ga0207698_100452952 463
9 3300046559 Ga0495667_0079198 Ga0495667_0079198_171_1682 465
10 3300017792 Ga0163161_10029785 Ga0163161_100297851 469
11 3300046511 Ga0495608_0000013 Ga0495608_0000013_115027_116598 469
12 3300046536 Ga0495587_0001456 Ga0495587_0001456_8388_9950 469
13 3300046675 Ga0495657_0000003 Ga0495657_0000003_166226_167797 469
14 3300047444 Ga0495675_0000002 Ga0495675_0000002_166226_167797 469
15 3300053084 Ga0495595_0000007 Ga0495595_0000007_115050_116621 469
16 3300053085 Ga0495619_0000026 Ga0495619_0000026_55943_57514 469
17 3300013296 Ga0157374_10116574 Ga0157374_101165742 470
18 3300046459 Ga0495629_0027420 Ga0495629_0027420_703_2277 472
19 3300053077 Ga0495601_0005883 Ga0495601_0005883_2340_3887 473
20 3300053085 Ga0495619_0000001 Ga0495619_0000001_418864_420375 473
21 3300026088 Ga0207641_10005248 Ga0207641_100052485 474
22 3300047321 Ga0495676_0052411 Ga0495676_0052411_846_2426 474
23 3300005841 Ga0068863_100000261 Ga0068863_10000026145 476
24 3300026088 Ga0207641_10000062 Ga0207641_10000062163 476
25 3300048909 Ga0496106_0000042 Ga0496106_0000042_80797_82359 476
26 3300048910 Ga0496107_0044471 Ga0496107_0044471_503_2065 476
27 3300048911 Ga0496108_0000537 Ga0496108_0000537_6251_7822 476
28 3300048912 Ga0496109_0003599 Ga0496109_0003599_5143_6714 476
29 3300005841 Ga0068863_100101586 Ga0068863_1001015862 477
30 3300048913 Ga0496110_0000052 Ga0496110_0000052_41924_43498 479
31 3300048914 Ga0496111_0000209 Ga0496111_0000209_17945_19519 479
32 3300006175 Ga0070712_100007502 Ga0070712_1000075025 480
33 3300025915 Ga0207693_10001350 Ga0207693_100013505 480
34 3300005329 Ga0070683_100005586 Ga0070683_10000558610 482
35 3300025944 Ga0207661_10001136 Ga0207661_100011362 482
36 3300053085 Ga0495619_0000506 Ga0495619_0000506_12437_13993 482
37 3300005535 Ga0070684_100028439 Ga0070684_1000284392 483
38 3300009176 Ga0105242_10000063 Ga0105242_1000006324 483
39 3300025934 Ga0207686_10000230 Ga0207686_1000023024 483
40 3300005539 Ga0068853_100026109 Ga0068853_1000261094 484
41 3300026041 Ga0207639_10048359 Ga0207639_100483592 484
42 3300046463 Ga0495653_0082043 Ga0495653_0082043_455_2002 484
43 3300005341 Ga0070691_10000004 Ga0070691_1000000446 485
44 3300005439 Ga0070711_100083314 Ga0070711_1000833142 485
45 3300013104 Ga0157370_10040264 Ga0157370_100402642 486
46 3300046459 Ga0495629_0016047 Ga0495629_0016047_723_2270 486
47 3300005365 Ga0070688_100000077 Ga0070688_10000007749 487
48 3300005466 Ga0070685_10000010 Ga0070685_10000010138 487
49 3300032126 Ga0307415_100056011 Ga0307415_1000560112 487
50 3300005337 Ga0070682_100000026 Ga0070682_100000026195 489
51 3300013104 Ga0157370_10043793 Ga0157370_100437932 489
52 3300005543 Ga0070672_100000005 Ga0070672_100000005128 490
53 3300013297 Ga0157378_10015261 Ga0157378_100152612 490
54 3300025940 Ga0207691_10000028 Ga0207691_100000282 490
55 3300048915 Ga0496112_0001298 Ga0496112_0001298_1518_3092 490
56 3300048916 Ga0496113_0000065 Ga0496113_0000065_38770_40344 490
57 3300005354 Ga0070675_100000050 Ga0070675_10000005060 491
58 3300025926 Ga0207659_10000055 Ga0207659_1000005562 491
59 3300046517 Ga0495630_0091311 Ga0495630_0091311_497_2059 491
60 3300046674 Ga0495588_0000073 Ga0495588_0000073_197020_198591 491
61 3300048911 Ga0496108_0104662 Ga0496108_0104662_505_2073 491
62 3300048912 Ga0496109_0000221 Ga0496109_0000221_24712_26280 491
63 3300005344 Ga0070661_100001449 Ga0070661_1000014499 492
64 3300005436 Ga0070713_100000135 Ga0070713_1000001351 492
65 3300025920 Ga0207649_10000556 Ga0207649_1000055620 492
66 3300025928 Ga0207700_10000003 Ga0207700_10000003154 492
67 3300046810 Ga0495660_0061024 Ga0495660_0061024_436_1995 492
68 3300048907 Ga0496104_0000230 Ga0496104_0000230_34706_36262 492
69 3300048908 Ga0496105_0000051 Ga0496105_0000051_40022_41578 492
70 3300005578 Ga0068854_100000082 Ga0068854_10000008233 493
71 3300005834 Ga0068851_10000141 Ga0068851_1000014122 493
72 3300009101 Ga0105247_10025659 Ga0105247_100256593 493
73 3300025321 Ga0207656_10000656 Ga0207656_100006569 493
74 3300025900 Ga0207710_10011560 Ga0207710_100115602 493
75 3300025981 Ga0207640_10000054 Ga0207640_100000548 493
76 3300045836 Ga0466958_0047476 Ga0466958_0047476_948_2510 493
77 3300049578 Ga0501042_0001883 Ga0501042_0001883_10935_12497 493
78 3300053077 Ga0495601_0026982 Ga0495601_0026982_1828_3384 493
79 3300005367 Ga0070667_100013639 Ga0070667_1000136396 494
80 3300013308 Ga0157375_10000365 Ga0157375_1000036515 494
81 3300025986 Ga0207658_10009339 Ga0207658_100093392 494
82 3300053094 Ga0500566_0004549 Ga0500566_0004549_1893_3464 494
83 3300005618 Ga0068864_100000043 Ga0068864_100000043163 495
84 3300009174 Ga0105241_10045737 Ga0105241_100457372 495
85 3300026095 Ga0207676_10000042 Ga0207676_100000428 495
86 3300046507 Ga0495606_0000017 Ga0495606_0000017_33630_35189 495
87 3300013308 Ga0157375_10105211 Ga0157375_101052112 496
88 3300048907 Ga0496104_0045880 Ga0496104_0045880_403_1977 496
89 3300046463 Ga0495653_0133116 Ga0495653_0133116_100_1644 499
90 3300047317 Ga0495604_0006007 Ga0495604_0006007_3102_4676 499
91 3300005329 Ga0070683_100012615 Ga0070683_1000126152 501
92 3300005535 Ga0070684_100004420 Ga0070684_1000044202 501
93 3300025944 Ga0207661_10000858 Ga0207661_100008585 501
94 3300053077 Ga0495601_0000029 Ga0495601_0000029_97937_99463 502
95 3300046517 Ga0495630_0000032 Ga0495630_0000032_52115_53641 503
96 3300047317 Ga0495604_0030722 Ga0495604_0030722_101_1672 503
97 3300048088 Ga0495602_0000034 Ga0495602_0000034_57066_58637 503
98 3300005456 Ga0070678_100014437 Ga0070678_1000144371 504
99 3300026121 Ga0207683_10011240 Ga0207683_100112406 504
100 3300005356 Ga0070674_100000002 Ga0070674_10000000217 505
101 3300005718 Ga0068866_10000296 Ga0068866_1000029616 505
102 3300009176 Ga0105242_10030801 Ga0105242_100308012 505
103 3300025899 Ga0207642_10000173 Ga0207642_1000017310 505
104 3300025934 Ga0207686_10066832 Ga0207686_100668322 505
105 3300025937 Ga0207669_10000029 Ga0207669_1000002993 505
106 3300046681 Ga0495647_0001958 Ga0495647_0001958_79_1614 506
107 3300013297 Ga0157378_10019758 Ga0157378_100197582 509
108 3300025972 Ga0207668_10050223 Ga0207668_100502232 509
109 3300005338 Ga0068868_100001800 Ga0068868_1000018006 510
110 3300026023 Ga0207677_10001225 Ga0207677_1000122514 510
111 3300047471 Ga0495684_0050586 Ga0495684_0050586_18_1574 510
112 3300046689 Ga0495613_0000233 Ga0495613_0000233_39745_41319 511
113 3300013307 Ga0157372_10001749 Ga0157372_100017499 512
114 3300046663 Ga0495635_0119447 Ga0495635_0119447_153_1700 512
115 3300046690 Ga0495624_0000400 Ga0495624_0000400_20312_21883 512
116 3300047320 Ga0495672_0037143 Ga0495672_0037143_278_1837 512
117 3300002074 JGI24748J21848_1000191 JGI24748J21848_10001916 516

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF11832

DUF3352

Protein of unknown function (DUF3352)

9

511

0.73

Structural Annotation

Top 5 Hits

ID Description Score Start End
6c3k-assembly2.cif.gz_B apo crystal structure of s. aureus penicillin binding protein 4 (pbp4) mutant (e183a, f241r) 0.7142 493 515
6dz8-assembly2.cif.gz_B crystal structure of s. aureus penicillin binding protein 4 (pbp4) mutant (s75c) 0.6998 493 515
3mfd-assembly2.cif.gz_B the structure of the beta-lactamase superfamily domain of d-alanyl-d-alanine carboxypeptidase from bacillus subtilis 0.6976 493 514
5ty7-assembly1.cif.gz_A crystal structure of wild-type s. aureus penicillin binding protein 4 (pbp4) in complex with nafcillin 0.6966 493 515
3hum-assembly2.cif.gz_B crystal structure of penicillin binding protein 4 from staphylococcus aureus col in complex with cefotaxime 0.684 493 515
ID Description Score Start End Superfamily
3kd4B03 Mainly Beta;Sandwich;Jelly Rolls; 0.8211 495 516 2.60.120.1130
af_I1KX47_26_277_2.60.120.200 Mainly Beta;Sandwich;Jelly Rolls; 0.718 246 266 2.60.120.200
5tx9A01 Alpha Beta;3-Layer(aba) Sandwich;Beta-lactamase;DD-peptidase/beta-lactamase superfamily 0.6861 492 515 3.40.710.10
af_I6Y204_23_291_3.40.710.10 Alpha Beta;3-Layer(aba) Sandwich;Beta-lactamase;DD-peptidase/beta-lactamase superfamily 0.656 493 516 3.40.710.10
af_P82640_15_92_2.10.60.10 Mainly Beta;Ribbon;CD59;CD59 0.6331 483 516 2.10.60.10
ID Description Score Start End GO Terms
AF-A0A1M3BH91-F1-model_v4 DUF3352 domain-containing protein 0.8585 2 516
AF-A0A1M3BH91-F1-model_v4 DUF3352 domain-containing protein 0.8558 2 516
AF-A0A838VB48-F1-model_v4 DUF3352 domain-containing protein 0.7882 4 516
AF-A0A838VB48-F1-model_v4 DUF3352 domain-containing protein 0.7801 4 516
AF-A0A524JAC3-F1-model_v4 DUF3352 domain-containing protein 0.768 17 288

Feature Viewer

pLDDT pTM Quality
82.9 0.77 High
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Predicted Structure (AlphaFold2)

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