F093147

General Info

Members Datasets Scaffolds Average Seq Length
117 40 214 1182

Family's Representative Sequence

Representative Sequence 3300025921|Ga0207652_10024492|Ga0207652_100244921
Length 1248
Sequence MPLLGRPRLLHELCASLSPSKHWLCVAASDALDSVLRSSSRICASSPRARSWRTPFRAARLSGVLALLAPLGLMAKNGLVATPLASRSGPRGATLFTLMPASDTGVVAENKFDDPKMWSERYEEFAYGSIGTGVTIGDFDHDGRPDLFVVCKTGQSRLFRNLGGWKFEDVTDRAGLTMRFGPGNWSDTIKGWVGRTVPVASVEQWQQGATFVDVDNDGWLDLYVCRFNAPNLLYMNQHDGTFREEAAARGLATVDSSAMAAFCDYDRDGKLDVYINTSMRDAASAPNGGPGHLFHNRGDGTFVEVTAKAGLHENALAHSATWWDYDNDGWPDLYVANDFAGADLLYRNNRDGTFTNVIDRVVPHLPYSSMGADVGDVDNDGRVDLFVADMAPTSHEKDQRGMVRAREMNRDADARGAPQYSRNALFLNSGTGYMREAASLAGIAATDWTWSVRLEDLDNDGLLDLYVTNGMTREFQNADLLDKLMRADNAAERRRFIRSKRPMRERHLAFHNSGELKFEDVSSSWGLDQVGVGFLVYTSYDANVTVLRNDSDTGHRLVVALRGTQSNRFGVGATVRVQTASRSQVRQLVLSRGYLSASEPILHFGLGQDTRVQTLTVDWPSGAKQTFNDLPSDQRLTITEPEAARPLPAAVETAAPPTTQFTEVSAALNLSYAARSKHVEELPQPLLTIRFNRRGPALAVGSLSSESEPDLFLGSTAADPARLLRRRPDGRFANTPIGPAGFEHQITDGPALILDVDGDGHNDVLLASAGTLPATTDDEYRLHLLLNDGNGALHPASPDTVPALSFRAGALAATDFDRDGRLDVFVGARVKLGEYPLSPDSALLANRGGRFVDVTDIVAPGLRRVGMVTSALWSDVDGDGWPDLVLAIDWGTVKYFHNDGGRAFTDWTDRAGFAAAGTGWWTSLATADFNHDGRPDFVAGNVGLNTPFTASAEYPTLLFYGDFGRTNGPIVLEAYYQGGRLYPRRSRHDLCREISTLPRRFPTTDQYARATLEQVVGSEPLRRAQRFAATQFASGVFLSQPDGTYHFEPLPRIAQIAPLQGAIAADLDGDGNPDIYAVQNSYASPAIGHFDGGLSQLLRGDGQGHFAAVEPLESGLVVPGNAKALVAVDFDRDGWPDFVVTRNDATSLAFANHGVAGRQSMCVELRGAPGNPSAVGARVALELRDGTVQTSEILAGSSYYSQSLAAAFFGYPIGNPPHRLTVRWPDGTTTVQTPVAARPRVIITAPKR

Samples

Sample ID Description Type Environment
1 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
7 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
8 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
9 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
10 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
11 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
12 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
13 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
14 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
15 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
16 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
17 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
18 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
19 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
20 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
21 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
22 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
23 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
24 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
25 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
26 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
27 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
28 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
29 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
30 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
31 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
32 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
33 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
34 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
35 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
36 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
37 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
38 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
39 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
40 2786546940 Opitutaceae bacterium EW11 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 97.44
Metatranscriptomes 0
Isolates 2.56

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 90.6
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207652_10024492 3300025921 Bacteria 5008
2 rootH2_10005293 3300003320 Bacteria 31643
3 rootH2_10033198 3300003320 Bacteria 11688
4 rootH2_10033937 3300003320 Bacteria 25928
5 rootH2_10064146 3300003320 Bacteria 8321
6 rootL2_10190987 3300003322 Bacteria 6473
7 Ga0070658_10009125 3300005327 Bacteria 7973
8 Ga0070683_100008095 3300005329 Bacteria 8928
9 Ga0070683_100010342 3300005329 Bacteria 8025
10 Ga0070683_100036592 3300005329 Bacteria 4492
11 Ga0070679_100006663 3300005530 Bacteria 10771
12 Ga0070679_100035121 3300005530 Bacteria 4973
13 Ga0068856_100005359 3300005614 Bacteria 12650
14 Ga0068856_100020385 3300005614 Bacteria 6439
15 Ga0070717_10000030 3300006028 Bacteria 142934
16 Ga0070717_10000033 3300006028 Bacteria 131514
17 Ga0207661_10001557 3300025944 Bacteria 15605
18 Ga0207661_10003565 3300025944 Bacteria 10822
19 Ga0207661_10005232 3300025944 Bacteria 9121
20 Ga0207702_10000050 3300026078 Bacteria 140110
21 Ga0207702_10000091 3300026078 Bacteria 104021
22 Ga0207702_10000245 3300026078 Bacteria 63422
23 Ga0207702_10001459 3300026078 Bacteria 23510
24 Ga0265319_1000087 3300028563 Bacteria 71928
25 Ga0265319_1000223 3300028563 Bacteria 42376
26 Ga0265319_1000718 3300028563 Bacteria 21706
27 Ga0265319_1001064 3300028563 Bacteria 17137
28 Ga0265319_1001955 3300028563 Bacteria 11658
29 Ga0265319_1006499 3300028563 Bacteria 5407
30 Ga0265334_10004058 3300028573 Bacteria 6570
31 Ga0265318_10000003 3300028577 Bacteria 333722
32 Ga0265318_10000032 3300028577 Bacteria 143847
33 Ga0265318_10000266 3300028577 Bacteria 44831
34 Ga0265318_10001446 3300028577 Bacteria 13983
35 Ga0265318_10001751 3300028577 Bacteria 12371
36 Ga0265318_10001812 3300028577 Bacteria 12131
37 Ga0265318_10002763 3300028577 Bacteria 9194
38 Ga0265318_10002828 3300028577 Bacteria 9057
39 Ga0265318_10002831 3300028577 Bacteria 9055
40 Ga0265318_10003104 3300028577 Bacteria 8529
41 Ga0265323_10009574 3300028653 Bacteria 3951
42 Ga0265336_10000271 3300028666 Bacteria 36331
43 Ga0265336_10001011 3300028666 Bacteria 13818
44 Ga0265338_10002324 3300028800 Bacteria 28746
45 Ga0265338_10002658 3300028800 Bacteria 26289
46 Ga0265338_10003407 3300028800 Bacteria 22426
47 Ga0265338_10004312 3300028800 Bacteria 19304
48 Ga0265324_10006481 3300029957 Bacteria 4873
49 Ga0265332_10008306 3300031238 Bacteria 4666
50 Ga0265320_10000718 3300031240 Bacteria 25346
51 Ga0265320_10000762 3300031240 Bacteria 24702
52 Ga0265320_10002376 3300031240 Bacteria 13158
53 Ga0265320_10003356 3300031240 Bacteria 10799
54 Ga0265320_10003985 3300031240 Bacteria 9734
55 Ga0265320_10004120 3300031240 Bacteria 9551
56 Ga0265320_10004454 3300031240 Bacteria 9177
57 Ga0265320_10011073 3300031240 Bacteria 5325
58 Ga0265331_10002414 3300031250 Bacteria 12672
59 Ga0265331_10002783 3300031250 Bacteria 11603
60 Ga0265331_10003043 3300031250 Bacteria 11005
61 Ga0265327_10002744 3300031251 Bacteria 17913
62 Ga0265327_10002751 3300031251 Bacteria 17880
63 Ga0265327_10011421 3300031251 Bacteria 6114
64 Ga0265313_10001561 3300031595 Bacteria 21245
65 Ga0265313_10003844 3300031595 Bacteria 11852
66 Ga0265313_10005170 3300031595 Bacteria 9690
67 Ga0265313_10007939 3300031595 Bacteria 7130
68 Ga0307508_10000100 3300031616 Bacteria 102032
69 Ga0307508_10000106 3300031616 Bacteria 98674
70 Ga0265314_10000936 3300031711 Bacteria 34327
71 Ga0265314_10002606 3300031711 Bacteria 18240
72 Ga0265314_10004406 3300031711 Bacteria 13074
73 Ga0265314_10004592 3300031711 Bacteria 12745
74 Ga0265342_10002620 3300031712 Bacteria 15395
75 Ga0265342_10007317 3300031712 Bacteria 8100
76 Ga0265342_10016017 3300031712 Bacteria 4911
77 Ga0451577_0012763 3300042876 Bacteria 7881
78 Ga0453683_0000215 3300044673 Bacteria 76688
79 Ga0453683_0000472 3300044673 Bacteria 46292
80 Ga0453683_0000649 3300044673 Bacteria 37396
81 Ga0453683_0003081 3300044673 Bacteria 12470
82 Ga0453684_0009439 3300044712 Bacteria 17065
83 Ga0453684_0025431 3300044712 Bacteria 8597
84 Ga0453684_0029897 3300044712 Bacteria 7716
85 Ga0451576_0000126 3300045051 Bacteria 193283
86 Ga0451576_0000146 3300045051 Bacteria 179707
87 Ga0451576_0000409 3300045051 Bacteria 99890
88 Ga0451576_0000534 3300045051 Bacteria 81922
89 Ga0451576_0001618 3300045051 Bacteria 37793
90 Ga0495592_0000319 3300046454 Bacteria 40237
91 Ga0495586_0002439 3300046535 Bacteria 10091
92 Ga0495645_0024003 3300046543 Bacteria 4420
93 Ga0501032_0000585 3300049569 Bacteria 29325
94 Ga0501034_0013639 3300049571 Bacteria 8357
95 Ga0501034_0021969 3300049571 Bacteria 6502
96 Ga0501046_0001446 3300049580 Bacteria 22843
97 Ga0501046_0001853 3300049580 Bacteria 20130
98 Ga0501046_0001918 3300049580 Bacteria 19742
99 Ga0501047_0001161 3300049581 Bacteria 26077
100 Ga0501047_0009814 3300049581 Bacteria 9046
101 Ga0501047_0020156 3300049581 Bacteria 6401
102 Ga0501083_0029910 3300049744 Bacteria 3743
103 Ga0501035_0001654 3300049822 Bacteria 22526
104 Ga0501044_0002160 3300049823 Bacteria 22548
105 2788433271 2786546940 Bacteria 6396474
106 2788435711 2786546940 Bacteria 6396474
107 2788437414 2786546940 Bacteria 6396474
108 Ga0207652_10024492
109 rootH2_10005293
110 rootH2_10033198
111 rootH2_10033937
112 rootH2_10064146
113 rootL2_10190987
114 Ga0070658_10009125
115 Ga0070683_100008095
116 Ga0070683_100010342
117 Ga0070683_100036592
118 Ga0070679_100006663
119 Ga0070679_100035121
120 Ga0068856_100005359
121 Ga0068856_100020385
122 Ga0070717_10000030
123 Ga0070717_10000033
124 Ga0207661_10001557
125 Ga0207661_10003565
126 Ga0207661_10005232
127 Ga0207702_10000050
128 Ga0207702_10000091
129 Ga0207702_10000245
130 Ga0207702_10001459
131 Ga0265319_1000087
132 Ga0265319_1000223
133 Ga0265319_1000718
134 Ga0265319_1001064
135 Ga0265319_1001955
136 Ga0265319_1006499
137 Ga0265334_10004058
138 Ga0265318_10000003
139 Ga0265318_10000032
140 Ga0265318_10000266
141 Ga0265318_10001446
142 Ga0265318_10001751
143 Ga0265318_10001812
144 Ga0265318_10002763
145 Ga0265318_10002828
146 Ga0265318_10002831
147 Ga0265318_10003104
148 Ga0265323_10009574
149 Ga0265336_10000271
150 Ga0265336_10001011
151 Ga0265338_10002324
152 Ga0265338_10002658
153 Ga0265338_10003407
154 Ga0265338_10004312
155 Ga0265324_10006481
156 Ga0265332_10008306
157 Ga0265320_10000718
158 Ga0265320_10000762
159 Ga0265320_10002376
160 Ga0265320_10003356
161 Ga0265320_10003985
162 Ga0265320_10004120
163 Ga0265320_10004454
164 Ga0265320_10011073
165 Ga0265331_10002414
166 Ga0265331_10002783
167 Ga0265331_10003043
168 Ga0265327_10002744
169 Ga0265327_10002751
170 Ga0265327_10011421
171 Ga0265313_10001561
172 Ga0265313_10003844
173 Ga0265313_10005170
174 Ga0265313_10007939
175 Ga0307508_10000100
176 Ga0307508_10000106
177 Ga0265314_10000936
178 Ga0265314_10002606
179 Ga0265314_10004406
180 Ga0265314_10004592
181 Ga0265342_10002620
182 Ga0265342_10007317
183 Ga0265342_10016017
184 Ga0451577_0012763
185 Ga0453683_0000215
186 Ga0453683_0000472
187 Ga0453683_0000649
188 Ga0453683_0003081
189 Ga0453684_0009439
190 Ga0453684_0025431
191 Ga0453684_0029897
192 Ga0451576_0000126
193 Ga0451576_0000146
194 Ga0451576_0000409
195 Ga0451576_0000534
196 Ga0451576_0001618
197 Ga0495592_0000319
198 Ga0495586_0002439
199 Ga0495645_0024003
200 Ga0501032_0000585
201 Ga0501034_0013639
202 Ga0501034_0021969
203 Ga0501046_0001446
204 Ga0501046_0001853
205 Ga0501046_0001918
206 Ga0501047_0001161
207 Ga0501047_0009814
208 Ga0501047_0020156
209 Ga0501083_0029910
210 Ga0501035_0001654
211 Ga0501044_0002160
212 2788433271
213 2788435711
214 2788437414

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07593

UnbV_ASPIC

ASPIC and UnbV

570

637

0.97

PF13517

FG-GAP_3

FG-GAP-like repeat

324

387

0.95

PF01839

FG-GAP

FG-GAP repeat

920

945

0.94

PF07593

UnbV_ASPIC

ASPIC and UnbV

1174

1241

0.94

PF13517

FG-GAP_3

FG-GAP-like repeat

411

467

0.91

PF13517

FG-GAP_3

FG-GAP-like repeat

213

275

0.89

PF13517

FG-GAP_3

FG-GAP-like repeat

276

335

0.88

PF13517

FG-GAP_3

FG-GAP-like repeat

875

939

0.87

PF13517

FG-GAP_3

FG-GAP-like repeat

755

826

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
6lk8-assembly1.cif.gz_h structure of xenopus laevis cytoplasmic ring subunit. 0.7505 76 444
6lk8-assembly1.cif.gz_H structure of xenopus laevis cytoplasmic ring subunit. 0.7362 76 444
7uhy-assembly1.cif.gz_H-2 human gator2 complex 0.7138 77 443
8hq2-assembly2.cif.gz_E crystal structure of human adam22 in complex with human lgi1 mutant 0.712 11 484
3bg0-assembly1.cif.gz_A architecture of a coat for the nuclear pore membrane 0.7091 71 444
ID Description Score Start End Superfamily
af_A1XF92_202_447_2.130.10.130 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;Integrin alpha, N-terminal 0.8179 71 278 2.130.10.130
af_A0A2R8QV90_961_1207_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.7223 85 278 2.130.10.10
af_Q149M9_1083_1222_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.7149 710 840 2.130.10.10
af_K7LFF8_274_416_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.7096 932 1055 2.130.10.10
af_Q8K1S1_252_395_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.7083 702 875 2.130.10.10
ID Description Score Start End GO Terms
AF-A0A2T6DK97-F1-model_v4 RNA-binding protein 0.9758 37 1146
AF-B1ZT59-F1-model_v4 ASPIC/UnbV domain protein 0.9615 2 1144
AF-B5JE86-F1-model_v4 FG-GAP repeat domain protein 0.9604 14 1146
AF-B1ZT59-F1-model_v4 ASPIC/UnbV domain protein 0.9582 2 1144
AF-A0A7Y3A509-F1-model_v4 VCBS repeat-containing protein 0.9573 71 271

Map