F093503

General Info

Members Datasets Scaffolds Average Seq Length
117 104 107 349

Family's Representative Sequence

Representative Sequence 3300031507|Ga0307509_10084259|Ga0307509_100842592
Length 369
Sequence MIEVTRGDILKAHAEALVNTVNCVGVMGRGIAAQFKRAYPENFSAYQQACKRHELQPGRMLIVETGQLAPRWVINFPTKRHWRGNSRIEDIDAGLAALVEDIRRLGIRSIAVPPLGCGLGGLDWAVVRPRIEQAFAALPDVTVLLFEPDGAPRPEEMIRSTHVPTMTPGRAVLIGLVERYLAGLMDPFVSLLEIHKLMYFMQESGEPLRLRYTKAPYGPYAENLRQVLTHVEGHFLTGYADGGDAPGKQLELVPGASKTALAFLEAHPDTKARFDRVAALVQGFETPFGMELLATVHWVAVHDGARTVDEAVDAVYQWNDRKRVFEPRQIQLAWDVLDAGGWLGPDQLDATAPLTFTAGGLLSGDGPRS

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2501025502 Paraburkholderia unamae MTI-641 Isolate Rhizosphere
3 2510917013 Paraburkholderia unamae MTI-641 Isolate Rhizosphere
4 2643221660 Methylibium sp. Root1272 Isolate Unclassified
5 2786546548 Spartobacteria bacterium LR76 Isolate Unclassified
6 2889415604 Paludisphaera rhizosphaerae JC665 Isolate Rhizosphere
7 2924221636 Sinorhizobium meliloti USDA1416 Isolate Nodule
8 2928115317 Pseudacidovorax sp. 1753 Isolate Rhizosphere
9 2967706974 Sinorhizobium meliloti USDA1206 Isolate Nodule
10 2970136068 Sinorhizobium meliloti USDA1699 Isolate Nodule
11 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
12 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
13 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
14 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
15 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
16 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
17 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
18 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
19 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
20 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
21 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
22 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
23 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
24 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
25 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
26 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
27 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
28 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
29 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
30 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
31 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
32 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
33 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
34 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
35 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
36 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
37 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
38 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
39 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
40 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
41 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
42 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
43 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
44 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
55 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
56 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
57 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
58 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
59 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
60 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
61 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
62 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
63 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
64 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
65 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
66 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
67 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
68 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
69 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
70 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
71 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
72 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
73 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
74 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
75 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
76 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
77 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
78 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
79 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
80 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
81 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
82 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
83 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
84 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
85 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
87 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
88 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
89 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
90 3300049671 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought Metagenome Rhizosphere
91 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
93 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
94 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
95 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
96 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
97 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
98 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
99 3300053138 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 endosphere Metagenome Endosphere
100 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
101 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
102 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
103 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
104 8055266321 Paraburkholderia rhynchosiae LMG 27174 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 91.45
Metatranscriptomes 0
Isolates 8.55

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.84
Nodule 3.42
Rhizoplane 0
Rhizosphere 77.78
Stem 0
Stem Tuber 0
Unclassified 11.97

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_3646105 2162886007 Bacteria 4571
2 JGI25406J46586_10007919 3300003203 Bacteria 4835
3 rootL2_10000041 3300003322 Bacteria 83940
4 Ga0065704_10070717 3300005289 Bacteria 17179
5 Ga0070676_10013178 3300005328 Bacteria 4529
6 Ga0070683_100179186 3300005329 Bacteria 2011
7 Ga0070677_10001268 3300005333 Bacteria 8094
8 Ga0070680_100097869 3300005336 Bacteria 2433
9 Ga0070681_10074791 3300005458 Bacteria 3348
10 Ga0070681_10145781 3300005458 Bacteria 2296
11 Ga0070693_100077929 3300005547 Bacteria 1968
12 Ga0068855_100267020 3300005563 Bacteria 1904
13 Ga0068852_100064397 3300005616 Bacteria 3195
14 Ga0068859_100162972 3300005617 Bacteria 2309
15 Ga0068859_100188331 3300005617 Bacteria 2147
16 Ga0068870_10007175 3300005840 Bacteria 4960
17 Ga0068863_100030418 3300005841 Bacteria 5156
18 Ga0068858_100182002 3300005842 Bacteria 1985
19 Ga0068860_100039389 3300005843 Bacteria 4520
20 Ga0068860_100137707 3300005843 Unclassified 2345
21 Ga0081455_10050790 3300005937 Bacteria 3562
22 Ga0081539_10016894 3300005985 Bacteria 5173
23 Ga0075365_10051700 3300006038 Bacteria 2715
24 Ga0075366_10027493 3300006195 Bacteria 3338
25 Ga0075433_10001184 3300006852 Bacteria 18962
26 Ga0075434_100266528 3300006871 Bacteria 1732
27 Ga0075429_100262641 3300006880 Unclassified 1512
28 Ga0097620_100069421 3300006931 Unclassified 3559
29 Ga0097620_100162980 3300006931 Bacteria 2309
30 Ga0097620_100188333 3300006931 Bacteria 2147
31 Ga0105240_10198637 3300009093 Bacteria 2352
32 Ga0114129_10183608 3300009147 Bacteria 2845
33 Ga0105239_10202366 3300010375 Bacteria 2225
34 Ga0157373_10017651 3300013100 Bacteria 5196
35 Ga0157370_10053564 3300013104 Bacteria 3847
36 Ga0157369_10119263 3300013105 Bacteria 2800
37 Ga0157374_10234264 3300013296 Bacteria 1804
38 Ga0157378_10136350 3300013297 Bacteria 2276
39 Ga0182008_10000160 3300014497 Bacteria 52928
40 Ga0207682_10002502 3300025893 Bacteria 8213
41 Ga0207645_10018566 3300025907 Bacteria 4571
42 Ga0207643_10008390 3300025908 Bacteria 5540
43 Ga0207705_10089891 3300025909 Bacteria 2247
44 Ga0207707_10019809 3300025912 Bacteria 5874
45 Ga0207707_10325129 3300025912 Bacteria 1327
46 Ga0207670_10001810 3300025936 Bacteria 11161
47 Ga0207667_10223996 3300025949 Bacteria 1927
48 Ga0207667_10336382 3300025949 Bacteria 1541
49 Ga0207641_10016787 3300026088 Bacteria 5995
50 Ga0207698_10085591 3300026142 Bacteria 2560
51 Ga0268264_10267187 3300028381 Unclassified 1596
52 Ga0265327_10005926 3300031251 Bacteria 9974
53 Ga0265316_10023069 3300031344 Bacteria 5233
54 Ga0265316_10034376 3300031344 Bacteria 4118
55 Ga0265316_10092329 3300031344 Bacteria 2308
56 Ga0307513_10007030 3300031456 Bacteria 14640
57 Ga0307509_10084259 3300031507 Bacteria 3275
58 Ga0307509_10276595 3300031507 Bacteria 1443
59 Ga0316576_10143726 3300031727 Bacteria 1796
60 Ga0307516_10002629 3300031730 Bacteria 23801
61 Ga0307413_10015722 3300031824 Bacteria 3886
62 Ga0307412_10000210 3300031911 Bacteria 39741
63 Ga0307409_100260226 3300031995 Bacteria 1592
64 Ga0307414_10009105 3300032004 Bacteria 5685
65 Ga0307411_10000492 3300032005 Bacteria 13753
66 Ga0400484_09828 3300038725 Bacteria 2620
67 Ga0400491_11441 3300038727 Bacteria 2995
68 Ga0400486_07368 3300038742 Bacteria 2749
69 Ga0400487_18976 3300039110 Bacteria 2271
70 Ga0453684_0013816 3300044712 Bacteria 13044
71 Ga0451576_0009322 3300045051 Bacteria 11398
72 Ga0495591_007486 3300046458 Bacteria 4636
73 Ga0495650_0000020 3300046471 Bacteria 533839
74 Ga0495605_0000106 3300046474 Bacteria 105494
75 Ga0495616_0000460 3300046513 Bacteria 30949
76 Ga0495620_0028690 3300046515 Bacteria 2584
77 Ga0495654_0000109 3300046530 Bacteria 93356
78 Ga0495625_0001046 3300046660 Bacteria 36303
79 Ga0495624_0190227 3300046690 Bacteria 1249
80 Ga0495674_0156018 3300047319 Bacteria 1912
81 Ga0495673_0000296 3300047469 Bacteria 66691
82 Ga0496122_0083783 3300048925 Bacteria 2209
83 Ga0496124_0002891 3300048927 Bacteria 21669
84 Ga0496125_0009719 3300048928 Bacteria 9821
85 Ga0501034_0178468 3300049571 Unclassified 2089
86 Ga0501034_0366685 3300049571 Bacteria 1367
87 Ga0501040_0010326 3300049576 Bacteria 6105
88 Ga0501046_0018301 3300049580 Bacteria 5832
89 Ga0501047_0198644 3300049581 Bacteria 1867
90 Ga0501070_0023380 3300049586 Bacteria 5178
91 Ga0501076_0112315 3300049592 Bacteria 2203
92 Ga0501238_002852 3300049671 Bacteria 2097
93 Ga0501035_0003897 3300049822 Bacteria 14233
94 Ga0501044_0014453 3300049823 Bacteria 8522
95 nmdc:mga00v17_159541_c1 3300050491 Bacteria 1451
96 nmdc:mga0yw44_15491_c2 3300050492 Bacteria 3411
97 nmdc:mga0k408_2850_c1 3300050493 Bacteria 9176
98 nmdc:mga09592_250892_c1 3300050508 Unclassified 1534
99 nmdc:mga0n895_266203_c1 3300050512 Bacteria 1739
100 nmdc:mga0a205_286_c1 3300050515 Bacteria 37132
101 nmdc:mga0a205_364751_c1 3300050515 Bacteria 1311
102 Ga0500564_000064 3300053138 Bacteria 28288
103 Ga0500616_0004941 3300053153 Bacteria 9256
104 Ga0500627_0000181 3300053158 Bacteria 18431
105 Ga0501084_0068748 3300054114 Bacteria 2965
106 Ga0530510_0002760 3300061734 Bacteria 12066
107 Ga0530510_0035196 3300061734 Bacteria 3608

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300013296 Ga0157374_10234264 Ga0157374_102342644 287
2 3300048928 Ga0496125_0009719 Ga0496125_0009719_26_958 310
3 3300050491 nmdc:mga00v17_159541_c1 nmdc:mga00v17_159541_c1_29_985 318
4 3300046458 Ga0495591_007486 Ga0495591_007486_3605_4573 321
5 3300050515 nmdc:mga0a205_364751_c1 nmdc:mga0a205_364751_c1_288_1298 321
6 3300038727 Ga0400491_11441 Ga0400491_11441_216_1265 335
7 iso_pu_bacteria 2510917013 2511086483 343
8 iso_pu_bacteria 2643221660 2644337713 343
9 iso_pu_bacteria 2786546548 2787507889 343
10 iso_pu_bacteria 2889415604 2889421655 343
11 iso_pu_bacteria 2924221636 2924226944 343
12 iso_pu_bacteria 2928115317 2928118279 343
13 iso_pu_bacteria 2967706974 2967708273 343
14 iso_pu_bacteria 2970136068 2970142938 343
15 3300006038 Ga0075365_10051700 Ga0075365_100517002 344
16 3300006195 Ga0075366_10027493 Ga0075366_100274934 344
17 3300038725 Ga0400484_09828 Ga0400484_09828_426_1463 344
18 3300050492 nmdc:mga0yw44_15491_c2 nmdc:mga0yw44_15491_c2_834_1916 344
19 3300050493 nmdc:mga0k408_2850_c1 nmdc:mga0k408_2850_c1_6239_7273 344
20 3300005329 Ga0070683_100179186 Ga0070683_1001791862 345
21 3300005336 Ga0070680_100097869 Ga0070680_1000978693 345
22 3300005458 Ga0070681_10074791 Ga0070681_100747913 345
23 3300005563 Ga0068855_100267020 Ga0068855_1002670201 345
24 3300013105 Ga0157369_10119263 Ga0157369_101192632 345
25 3300025912 Ga0207707_10019809 Ga0207707_100198093 345
26 3300025949 Ga0207667_10223996 Ga0207667_102239962 345
27 3300031344 Ga0265316_10034376 Ga0265316_100343762 345
28 3300049586 Ga0501070_0023380 Ga0501070_0023380_3169_4212 345
29 3300005616 Ga0068852_100064397 Ga0068852_1000643974 346
30 3300005843 Ga0068860_100039389 Ga0068860_1000393892 346
31 3300013297 Ga0157378_10136350 Ga0157378_101363502 346
32 3300026142 Ga0207698_10085591 Ga0207698_100855912 346
33 3300031507 Ga0307509_10084259 Ga0307509_100842592 346
34 3300031824 Ga0307413_10015722 Ga0307413_100157222 346
35 3300031995 Ga0307409_100260226 Ga0307409_1002602262 346
36 3300032004 Ga0307414_10009105 Ga0307414_100091054 346
37 3300032005 Ga0307411_10000492 Ga0307411_100004922 346
38 3300038742 Ga0400486_07368 Ga0400486_07368_1434_2474 346
39 3300049671 Ga0501238_002852 Ga0501238_002852_112_1152 346
40 2162886007 SwRhRL2b_contig_3646105 SwRhRL2b_0560.00007840 347
41 3300003203 JGI25406J46586_10007919 JGI25406J46586_100079197 347
42 3300003322 rootL2_10000041 rootL2_100000418 347
43 3300005289 Ga0065704_10070717 Ga0065704_1007071720 347
44 3300005328 Ga0070676_10013178 Ga0070676_100131782 347
45 3300005333 Ga0070677_10001268 Ga0070677_100012687 347
46 3300005458 Ga0070681_10145781 Ga0070681_101457813 347
47 3300005547 Ga0070693_100077929 Ga0070693_1000779292 347
48 3300005617 Ga0068859_100162972 Ga0068859_1001629723 347
49 3300005617 Ga0068859_100188331 Ga0068859_1001883312 347
50 3300005840 Ga0068870_10007175 Ga0068870_100071752 347
51 3300005841 Ga0068863_100030418 Ga0068863_1000304185 347
52 3300005842 Ga0068858_100182002 Ga0068858_1001820023 347
53 3300005843 Ga0068860_100137707 Ga0068860_1001377072 347
54 3300005937 Ga0081455_10050790 Ga0081455_100507903 347
55 3300005985 Ga0081539_10016894 Ga0081539_100168946 347
56 3300006852 Ga0075433_10001184 Ga0075433_100011843 347
57 3300006871 Ga0075434_100266528 Ga0075434_1002665282 347
58 3300006880 Ga0075429_100262641 Ga0075429_1002626412 347
59 3300006931 Ga0097620_100069421 Ga0097620_1000694213 347
60 3300006931 Ga0097620_100162980 Ga0097620_1001629803 347
61 3300006931 Ga0097620_100188333 Ga0097620_1001883331 347
62 3300009093 Ga0105240_10198637 Ga0105240_101986373 347
63 3300009147 Ga0114129_10183608 Ga0114129_101836083 347
64 3300010375 Ga0105239_10202366 Ga0105239_102023664 347
65 3300013100 Ga0157373_10017651 Ga0157373_100176511 347
66 3300013104 Ga0157370_10053564 Ga0157370_100535642 347
67 3300014497 Ga0182008_10000160 Ga0182008_1000016044 347
68 3300025893 Ga0207682_10002502 Ga0207682_100025024 347
69 3300025907 Ga0207645_10018566 Ga0207645_100185663 347
70 3300025908 Ga0207643_10008390 Ga0207643_100083902 347
71 3300025909 Ga0207705_10089891 Ga0207705_100898912 347
72 3300025912 Ga0207707_10325129 Ga0207707_103251292 347
73 3300025936 Ga0207670_10001810 Ga0207670_100018107 347
74 3300025949 Ga0207667_10336382 Ga0207667_103363822 347
75 3300026088 Ga0207641_10016787 Ga0207641_100167874 347
76 3300028381 Ga0268264_10267187 Ga0268264_102671872 347
77 3300031251 Ga0265327_10005926 Ga0265327_100059265 347
78 3300031344 Ga0265316_10023069 Ga0265316_100230692 347
79 3300031344 Ga0265316_10092329 Ga0265316_100923292 347
80 3300031456 Ga0307513_10007030 Ga0307513_1000703015 347
81 3300031507 Ga0307509_10276595 Ga0307509_102765952 347
82 3300031727 Ga0316576_10143726 Ga0316576_101437262 347
83 3300031730 Ga0307516_10002629 Ga0307516_100026297 347
84 3300031911 Ga0307412_10000210 Ga0307412_1000021039 347
85 3300039110 Ga0400487_18976 Ga0400487_18976_197_1240 347
86 3300044712 Ga0453684_0013816 Ga0453684_0013816_794_1849 347
87 3300045051 Ga0451576_0009322 Ga0451576_0009322_6705_7820 347
88 3300046471 Ga0495650_0000020 Ga0495650_0000020_39781_40836 347
89 3300046474 Ga0495605_0000106 Ga0495605_0000106_87269_88327 347
90 3300046513 Ga0495616_0000460 Ga0495616_0000460_24137_25192 347
91 3300046515 Ga0495620_0028690 Ga0495620_0028690_180_1235 347
92 3300046530 Ga0495654_0000109 Ga0495654_0000109_84397_85452 347
93 3300046660 Ga0495625_0001046 Ga0495625_0001046_2058_3113 347
94 3300046690 Ga0495624_0190227 Ga0495624_0190227_20_1093 347
95 3300047319 Ga0495674_0156018 Ga0495674_0156018_47_1120 347
96 3300047469 Ga0495673_0000296 Ga0495673_0000296_57298_58353 347
97 3300048925 Ga0496122_0083783 Ga0496122_0083783_807_1850 347
98 3300048927 Ga0496124_0002891 Ga0496124_0002891_14356_15405 347
99 3300049571 Ga0501034_0178468 Ga0501034_0178468_124_1221 347
100 3300049571 Ga0501034_0366685 Ga0501034_0366685_200_1246 347
101 3300049576 Ga0501040_0010326 Ga0501040_0010326_2136_3203 347
102 3300049580 Ga0501046_0018301 Ga0501046_0018301_4379_5440 347
103 3300049581 Ga0501047_0198644 Ga0501047_0198644_648_1697 347
104 3300049592 Ga0501076_0112315 Ga0501076_0112315_23_1090 347
105 3300049822 Ga0501035_0003897 Ga0501035_0003897_4228_5304 347
106 3300049823 Ga0501044_0014453 Ga0501044_0014453_3220_4296 347
107 3300050508 nmdc:mga09592_250892_c1 nmdc:mga09592_250892_c1_95_1150 347
108 3300050512 nmdc:mga0n895_266203_c1 nmdc:mga0n895_266203_c1_415_1482 347
109 3300050515 nmdc:mga0a205_286_c1 nmdc:mga0a205_286_c1_15950_17017 347
110 3300053138 Ga0500564_000064 Ga0500564_000064_4100_5155 347
111 3300053153 Ga0500616_0004941 Ga0500616_0004941_2952_4007 347
112 3300053158 Ga0500627_0000181 Ga0500627_0000181_8803_9858 347
113 3300054114 Ga0501084_0068748 Ga0501084_0068748_1161_2228 347
114 3300061734 Ga0530510_0002760 Ga0530510_0002760_3283_4350 347
115 3300061734 Ga0530510_0035196 Ga0530510_0035196_2142_3203 347
116 iso_pu_bacteria 2501025502 2501082169 347
117 iso_pu_bacteria 8055266321 8055268234 347

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01661

Macro

Macro domain

18

131

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
5m3i-assembly2.cif.gz_B macrodomain of mycobacterium tuberculosis darg 0.983 1 150
5m31-assembly1.cif.gz_A macrodomain of thermus aquaticus darg 0.9795 1 149
5m3i-assembly2.cif.gz_B macrodomain of mycobacterium tuberculosis darg 0.964 1 150
5m31-assembly1.cif.gz_A macrodomain of thermus aquaticus darg 0.9604 1 149
7yk3-assembly2.cif.gz_D crystal structure of dartg toxin-antitoxin complex from mycobacterium tuberculosis 0.9143 168 340
ID Description Score Start End Superfamily
af_O53605_1_147_3.40.220.10 Alpha Beta;3-Layer(aba) Sandwich;Leucine Aminopeptidase, subunit E; domain 1;Leucine Aminopeptidase, subunit E, domain 1 0.9881 1 147 3.40.220.10
af_O53605_1_147_3.40.220.10 Alpha Beta;3-Layer(aba) Sandwich;Leucine Aminopeptidase, subunit E; domain 1;Leucine Aminopeptidase, subunit E, domain 1 0.9814 1 147 3.40.220.10
af_Q961L8_1_145_3.40.220.10 Alpha Beta;3-Layer(aba) Sandwich;Leucine Aminopeptidase, subunit E; domain 1;Leucine Aminopeptidase, subunit E, domain 1 0.8451 2 146 3.40.220.10
af_Q8IPU1_23_158_3.40.220.10 Alpha Beta;3-Layer(aba) Sandwich;Leucine Aminopeptidase, subunit E; domain 1;Leucine Aminopeptidase, subunit E, domain 1 0.8373 7 142 3.40.220.10
af_A0A2R8Q9E4_958_1170_3.40.220.10 Alpha Beta;3-Layer(aba) Sandwich;Leucine Aminopeptidase, subunit E; domain 1;Leucine Aminopeptidase, subunit E, domain 1 0.8266 2 148 3.40.220.10
ID Description Score Start End GO Terms
AF-A0A2U2API7-F1-model_v4 Macro domain-containing protein 0.9937 1 109 GO:0140291
AF-A0A356EVX5-F1-model_v4 Appr-1-p processing protein 0.9919 1 129 GO:0140291
AF-A0A359LSU7-F1-model_v4 Appr-1-p processing protein 0.9904 1 145 GO:0140291
AF-A0A1H6FAR2-F1-model_v4 Appr-1-p processing protein 0.9896 168 346 GO:0140291
AF-A0A524Q9V0-F1-model_v4 Appr-1-p processing protein 0.9896 1 88 GO:0140291

Feature Viewer

pLDDT pTM Quality
87.09 0.56 Medium
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Predicted Structure (AlphaFold2)

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