F094559

General Info

Members Datasets Scaffolds Average Seq Length
117 82 234 289

Family's Representative Sequence

Representative Sequence 3300048918|Ga0496115_0000049|Ga0496115_0000049_35580_36539
Length 319
Sequence MCYTLSIKGKIQTRMKQRLSVRAIINEDGKALLLKRSNGRDTILGKYELPGGKLAYGEQPEDALRRYLHDDAGLHVQSAQLFDAVTYIDHDDRAIQYGVIAYLVTLAPQRHPMKLSGNYSKYKWHSMSSAQQSELTDLTQLLLGIIQQEQLTDKALAKVQQNDEKNTSSDSITIYSDGGSRGNPGPSAAGFVVLNNQQQVISEGGEYLGITTNNQAEYQGVRIGLEEAQKLGFKKVDFKLDSMLVVNQMKGYYKIKNRELWPIHERIRLLMTKFDRVTFTHVPRQFNQLADGMVNKTLDAHEREKSTNTQKGNDIIGDR

Samples

Sample ID Description Type Environment
1 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
2 2162886012 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v1 Metagenome Rhizosphere
3 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
4 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
5 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
6 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
7 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
8 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
9 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
10 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
11 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
12 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
13 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
14 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
15 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
16 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
17 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
18 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
19 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
20 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
21 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
22 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
23 3300009979 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_126 metaG Metagenome Rhizosphere
24 3300009984 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_127 metaG Metagenome Rhizosphere
25 3300009993 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_106 metaG Metagenome Rhizosphere
26 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
27 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
28 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
29 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
37 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
38 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
39 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
40 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
41 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
42 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
43 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
44 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
45 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
46 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
47 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
48 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
49 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
50 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
51 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
52 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
53 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
54 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
55 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
56 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
57 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
58 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
59 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
60 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
61 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
62 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
63 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
64 3300049674 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F11_A_3_drought Metagenome Rhizosphere
65 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
66 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
67 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
68 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
69 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
70 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
71 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
72 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
73 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
74 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
75 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
76 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
77 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
78 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
79 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
80 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
81 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
82 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 33.33
Nodule 0
Rhizoplane 2.56
Rhizosphere 59.83
Stem 0
Stem Tuber 0
Unclassified 3.42

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0496115_0000049 3300048918 Bacteria 109919
2 MBSR1b_contig_12311529 2162886012 Bacteria 1077
3 rootH1_10016269 3300003316 Bacteria 16679
4 rootH2_10004334 3300003320 Bacteria 85448
5 rootL2_10315149 3300003322 Bacteria 1243
6 rootH1_10265400 3300003323 Unclassified 1257
7 Ga0065715_10089662 3300005293 Bacteria 9033
8 Ga0068855_100000002 3300005563 Bacteria 616881
9 Ga0068855_100002092 3300005563 Bacteria 24707
10 Ga0068855_100031493 3300005563 Bacteria 6333
11 Ga0070664_100081248 3300005564 Bacteria 2793
12 Ga0068857_100002101 3300005577 Bacteria 16180
13 Ga0068857_100091294 3300005577 Unclassified 2726
14 Ga0068854_100025357 3300005578 Bacteria 4068
15 Ga0081455_10000006 3300005937 Bacteria 323066
16 Ga0075365_10000011 3300006038 Bacteria 85296
17 Ga0075365_10000752 3300006038 Bacteria 13154
18 Ga0075365_10083654 3300006038 Bacteria 2165
19 Ga0075365_10108735 3300006038 Bacteria 1904
20 Ga0075368_10000995 3300006042 Bacteria 8864
21 Ga0075363_100001478 3300006048 Bacteria 8944
22 Ga0075364_10000211 3300006051 Bacteria 27491
23 Ga0075364_10002599 3300006051 Bacteria 10130
24 Ga0075369_10009656 3300006186 Bacteria 3754
25 Ga0097621_100000001 3300006237 Bacteria 632268
26 Ga0075370_10061144 3300006353 Bacteria 2146
27 Ga0068871_100000001 3300006358 Bacteria 215987
28 Ga0105240_10000030 3300009093 Bacteria 321312
29 Ga0105240_10010910 3300009093 Bacteria 12732
30 Ga0105240_10012861 3300009093 Bacteria 11531
31 Ga0105237_10000001 3300009545 Bacteria 1009213
32 Ga0105032_100009 3300009979 Bacteria 86569
33 Ga0105032_100012 3300009979 Bacteria 73994
34 Ga0105029_100030 3300009984 Bacteria 6854
35 Ga0105028_100348 3300009993 Bacteria 4967
36 Ga0105028_100362 3300009993 Bacteria 4847
37 Ga0105246_10569520 3300011119 Bacteria 974
38 Ga0157369_10000003 3300013105 Bacteria 507337
39 Ga0157369_10005134 3300013105 Bacteria 15326
40 Ga0157372_10000007 3300013307 Bacteria 340690
41 Ga0157372_10000096 3300013307 Bacteria 91282
42 Ga0157372_10394644 3300013307 Bacteria 1612
43 Ga0207695_10000009 3300025913 Bacteria 1034276
44 Ga0207695_10001769 3300025913 Bacteria 34119
45 Ga0207695_10010829 3300025913 Bacteria 11111
46 Ga0207671_10000003 3300025914 Bacteria 1065461
47 Ga0207657_10002368 3300025919 Bacteria 20388
48 Ga0207679_10061486 3300025945 Bacteria 2796
49 Ga0207667_10000005 3300025949 Bacteria 715503
50 Ga0207667_10000048 3300025949 Bacteria 238293
51 Ga0207667_10009157 3300025949 Bacteria 11694
52 Ga0207640_10021859 3300025981 Bacteria 3819
53 Ga0207640_10294541 3300025981 Bacteria 1281
54 Ga0207674_10026843 3300026116 Bacteria 6108
55 Ga0207674_10156839 3300026116 Unclassified 2231
56 Ga0209813_10000157 3300027866 Bacteria 23004
57 Ga0209974_10000702 3300027876 Bacteria 11410
58 Ga0316183_1006021 3300030742 Bacteria 1629
59 Ga0316183_1025028 3300030742 Bacteria 6437
60 Ga0316181_1041587 3300030744 Bacteria 1379
61 Ga0316181_1081804 3300030744 Bacteria 1156
62 Ga0316181_1123581 3300030744 Bacteria 76132
63 Ga0316182_1088720 3300030745 Bacteria 6525
64 Ga0316182_1148372 3300030745 Bacteria 2845
65 Ga0316182_1157866 3300030745 Bacteria 8482
66 Ga0307516_10000003 3300031730 Bacteria 459377
67 Ga0307406_10000001 3300031901 Bacteria 638191
68 Ga0307412_10013396 3300031911 Bacteria 4808
69 Ga0307411_10158429 3300032005 Bacteria 1692
70 Ga0395899_0032149 3300037312 Bacteria 3942
71 Ga0439438_002547 3300041405 Bacteria 7726
72 Ga0439447_003307 3300041407 Bacteria 5737
73 Ga0439461_0001284 3300041410 Bacteria 3847
74 Ga0439466_0015096 3300041411 Bacteria 2808
75 Ga0439442_001283 3300042002 Bacteria 5001
76 Ga0439446_0000883 3300042156 Bacteria 6440
77 Ga0439434_0000948 3300042435 Bacteria 8353
78 Ga0466972_0040364 3300044658 Bacteria 2274
79 Ga0466965_0000828 3300044683 Bacteria 11698
80 Ga0466963_0379414 3300044694 Bacteria 996
81 Ga0495638_0000491 3300046460 Bacteria 47279
82 Ga0495660_0000114 3300046810 Bacteria 86218
83 Ga0495686_0036993 3300047472 Bacteria 3130
84 Ga0496109_0353639 3300048912 Bacteria 1388
85 Ga0496110_0496537 3300048913 Bacteria 1111
86 Ga0501034_0001207 3300049571 Bacteria 35479
87 Ga0501037_0000001 3300049573 Bacteria 753276
88 Ga0501038_0265142 3300049574 Bacteria 1356
89 Ga0501242_008002 3300049674 Bacteria 1230
90 nmdc:mga00v17_316_c1 3300050491 Bacteria 27522
91 nmdc:mga0yw44_126_c1 3300050492 Bacteria 26586
92 nmdc:mga0yw44_216842_c1 3300050492 Bacteria 1267
93 nmdc:mga0yw44_24269_c1 3300050492 Bacteria 3429
94 nmdc:mga0yw44_3_c1 3300050492 Bacteria 561857
95 nmdc:mga0yw44_83816_c1 3300050492 Bacteria 2003
96 nmdc:mga06z11_141_c1 3300050494 Bacteria 28597
97 nmdc:mga04h51_616_c1 3300050495 Bacteria 8413
98 nmdc:mga07m45_8805_c1 3300050496 Bacteria 3387
99 nmdc:mga0sz30_2062_c2 3300050516 Bacteria 4480
100 Ga0500643_012965 3300053087 Bacteria 2966
101 Ga0500643_019624 3300053087 Bacteria 2222
102 Ga0500646_0000010 3300053090 Bacteria 91525
103 Ga0500583_0000444 3300053092 Bacteria 13051
104 Ga0500583_0021533 3300053092 Bacteria 2683
105 Ga0500651_0000043 3300053093 Bacteria 86502
106 Ga0500651_0000072 3300053093 Bacteria 65983
107 Ga0500641_0000001 3300053096 Bacteria 1115973
108 Ga0500650_0003456 3300053098 Bacteria 5499
109 Ga0500556_0018057 3300053104 Unclassified 2220
110 Ga0500594_0000475 3300053118 Bacteria 8814
111 Ga0500652_000001 3300053131 Bacteria 946868
112 Ga0500655_000147 3300053133 Bacteria 17635
113 Ga0500577_0001504 3300053142 Bacteria 5947
114 Ga0500577_0005606 3300053142 Bacteria 3399
115 Ga0500577_0010449 3300053142 Bacteria 2733
116 Ga0500577_0102967 3300053142 Bacteria 1169
117 Ga0500616_0000067 3300053153 Bacteria 236311
118 Ga0496115_0000049
119 MBSR1b_contig_12311529
120 rootH1_10016269
121 rootH2_10004334
122 rootL2_10315149
123 rootH1_10265400
124 Ga0065715_10089662
125 Ga0068855_100000002
126 Ga0068855_100002092
127 Ga0068855_100031493
128 Ga0070664_100081248
129 Ga0068857_100002101
130 Ga0068857_100091294
131 Ga0068854_100025357
132 Ga0081455_10000006
133 Ga0075365_10000011
134 Ga0075365_10000752
135 Ga0075365_10083654
136 Ga0075365_10108735
137 Ga0075368_10000995
138 Ga0075363_100001478
139 Ga0075364_10000211
140 Ga0075364_10002599
141 Ga0075369_10009656
142 Ga0097621_100000001
143 Ga0075370_10061144
144 Ga0068871_100000001
145 Ga0105240_10000030
146 Ga0105240_10010910
147 Ga0105240_10012861
148 Ga0105237_10000001
149 Ga0105032_100009
150 Ga0105032_100012
151 Ga0105029_100030
152 Ga0105028_100348
153 Ga0105028_100362
154 Ga0105246_10569520
155 Ga0157369_10000003
156 Ga0157369_10005134
157 Ga0157372_10000007
158 Ga0157372_10000096
159 Ga0157372_10394644
160 Ga0207695_10000009
161 Ga0207695_10001769
162 Ga0207695_10010829
163 Ga0207671_10000003
164 Ga0207657_10002368
165 Ga0207679_10061486
166 Ga0207667_10000005
167 Ga0207667_10000048
168 Ga0207667_10009157
169 Ga0207640_10021859
170 Ga0207640_10294541
171 Ga0207674_10026843
172 Ga0207674_10156839
173 Ga0209813_10000157
174 Ga0209974_10000702
175 Ga0316183_1006021
176 Ga0316183_1025028
177 Ga0316181_1041587
178 Ga0316181_1081804
179 Ga0316181_1123581
180 Ga0316182_1088720
181 Ga0316182_1148372
182 Ga0316182_1157866
183 Ga0307516_10000003
184 Ga0307406_10000001
185 Ga0307412_10013396
186 Ga0307411_10158429
187 Ga0395899_0032149
188 Ga0439438_002547
189 Ga0439447_003307
190 Ga0439461_0001284
191 Ga0439466_0015096
192 Ga0439442_001283
193 Ga0439446_0000883
194 Ga0439434_0000948
195 Ga0466972_0040364
196 Ga0466965_0000828
197 Ga0466963_0379414
198 Ga0495638_0000491
199 Ga0495660_0000114
200 Ga0495686_0036993
201 Ga0496109_0353639
202 Ga0496110_0496537
203 Ga0501034_0001207
204 Ga0501037_0000001
205 Ga0501038_0265142
206 Ga0501242_008002
207 nmdc:mga00v17_316_c1
208 nmdc:mga0yw44_126_c1
209 nmdc:mga0yw44_216842_c1
210 nmdc:mga0yw44_24269_c1
211 nmdc:mga0yw44_3_c1
212 nmdc:mga0yw44_83816_c1
213 nmdc:mga06z11_141_c1
214 nmdc:mga04h51_616_c1
215 nmdc:mga07m45_8805_c1
216 nmdc:mga0sz30_2062_c2
217 Ga0500643_012965
218 Ga0500643_019624
219 Ga0500646_0000010
220 Ga0500583_0000444
221 Ga0500583_0021533
222 Ga0500651_0000043
223 Ga0500651_0000072
224 Ga0500641_0000001
225 Ga0500650_0003456
226 Ga0500556_0018057
227 Ga0500594_0000475
228 Ga0500652_000001
229 Ga0500655_000147
230 Ga0500577_0001504
231 Ga0500577_0005606
232 Ga0500577_0010449
233 Ga0500577_0102967
234 Ga0500616_0000067

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13456

RVT_3

Reverse transcriptase-like

175

297

0.96

PF00075

RNase_H

RNase H

169

299

0.78

PF00293

NUDIX

NUDIX domain

16

142

0.7

Structural Annotation

Top 5 Hits

ID Description Score Start End
4e19-assembly2.cif.gz_B crystal structure of rnase h1 from halophilic archaeon halobacterium salinarum nrc-1 0.9677 157 286
3hst-assembly4.cif.gz_D n-terminal rnase h domain of rv2228c from mycobacterium tuberculosis as a fusion protein with maltose binding protein 0.9672 157 284
4h8k-assembly1.cif.gz_B crystal structure of lc11-rnase h1 in complex with rna/dna hybrid 0.953 158 287
4e19-assembly2.cif.gz_B crystal structure of rnase h1 from halophilic archaeon halobacterium salinarum nrc-1 0.9464 157 286
3u3g-assembly3.cif.gz_C structure of lc11-rnase h1 isolated from compost by metagenomic approach: insight into the structural bases for unusual enzymatic properties of sto-rnase h1 0.9397 156 287
ID Description Score Start End Superfamily
af_A0A0R0FBC1_213_345_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.9825 158 284 3.30.420.10
af_A0A0P0X025_51_179_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.9687 157 283 3.30.420.10
3hstD00 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.9672 157 284 3.30.420.10
4e19A00 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.9648 157 286 3.30.420.10
af_K7M7T9_315_438_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.9574 158 279 3.30.420.10
ID Description Score Start End GO Terms
AF-A0A831NGG8-F1-model_v4 deleted 0.9862 155 289
AF-A0A1F8XDR0-F1-model_v4 RNase H type-1 domain-containing protein 0.9841 161 287 GO:0003676
GO:0004523
AF-A0A0F0CJ98-F1-model_v4 Ribonuclease HI 0.979 157 293 GO:0003676
GO:0004523
AF-A0A1F4UNH0-F1-model_v4 RNase H type-1 domain-containing protein 0.979 157 286 GO:0003676
GO:0004523
AF-X8FHB3-F1-model_v4 deleted 0.979 157 282

Map