F096926

General Info

Members Datasets Scaffolds Average Seq Length
118 91 236 845

Family's Representative Sequence

Representative Sequence 3300006847|Ga0075431_100025633|Ga0075431_1000256334
Length 882
Sequence MKLTIPELSLVVLIGTSGSGKSTFARRHFKPTEVLSSDYFRGLVSDAENDQTVTTPAFEALHFVAAKRLQLGRLVVVDATNVQDAARKPLVELARRHHVIPVAIVIDVPERLAHERNRTRPERDFGPHVIRQQHSQLRRSLRNLQREGFRHVHVLRSEDEVNAVEVVREPLWNNRRWDHGPFDIIGDVHGCADELEDLLEQLGYVMPGRVAGESAEGPDVSADLTPSPLTRRHPAGRRAVFLGDLADRGPRIPDVLETVMTMVGSGAALCVPGNHDIKLMRKLRGRDVQITHGLAESLEQLETRTPEFRDGVARFIDDLVSHYVLDDGKLVVAHAGLKEELQGRGSGAVRDFALYGETTGETDEFGLPVRYNWAAEYRGKAAVVYGHTPVPEPEWVNGTINIDTGCVFGGRLTALRWPERELVSVAARRTYAEPARPFLEEPSEGMLTAQQALDDVLDLADVQGKRIVHTRLHRTVTVREENATAALEVMSRFAVNPKWLIYLPPTMSPSETTVREGLLEHPSEAFAYYRGQGVPEVMCQEKHMGSRAVVVICRDADVARRRFGIATTAAPDGGASQEGDGAGIVYTRTGRRFFDDVALETTLLAIVRDALDRAGFWDALATDWVCLDCELMPWSAKAQELIRRQYAAVGAAATMSLGETRAALEATERRHVDVGMLGQWYSERTALAACYVEAYSRYCWPVTSVNDLRLAPFHVMATEGAVHADKDHLWHMRTLAGVTAAGGPVLFTTRHRVVNVTDPESDAAAVVWWEGMTAAGGEGGEGMVVKPLPFVATGSRGLVQPAVKCRGREYLRIIYGPEYTLPANLARLRQRGLHAKRSLALREFALGIEALERFVRREPLRRVHECVFGVLALESEPVDPRL

Samples

Sample ID Description Type Environment
1 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
5 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
6 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
7 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
8 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
9 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
10 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
11 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
12 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
13 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
14 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
15 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
16 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
17 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
18 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
19 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
20 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
21 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
22 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
23 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
24 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
25 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
26 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
27 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
28 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
29 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
30 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
31 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
32 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
33 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
34 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
35 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
36 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
37 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
38 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
39 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
40 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
41 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
60 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
61 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
62 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
63 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
64 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
65 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
66 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
67 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
68 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
69 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
70 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
71 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
72 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
73 3300049515 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F22_B_5_drought Metagenome Rhizosphere
74 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
75 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
76 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
77 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
78 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
79 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
80 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
81 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
82 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
83 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere
84 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
85 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
86 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
87 2524614857 Deinococcus ficus DSM 19119 Isolate Rhizosphere
88 2739367875 Deinococcus ficus CC-FR2-10 Isolate Unclassified
89 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
90 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
91 2904467357 Chitinophaga sancti 3198 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 95.76
Metatranscriptomes 0
Isolates 4.24

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.69
Nodule 0
Rhizoplane 0
Rhizosphere 89.83
Stem 0
Stem Tuber 0
Unclassified 0.85

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0075431_100025633 3300006847 Bacteria 6044
2 JGI25406J46586_10014670 3300003203 Bacteria 3328
3 rootL2_10043359 3300003322 Bacteria 12698
4 Ga0065707_10002558 3300005295 Bacteria 4934
5 Ga0070689_100001787 3300005340 Bacteria 13812
6 Ga0070692_10000747 3300005345 Bacteria 10602
7 Ga0070669_100000092 3300005353 Bacteria 87728
8 Ga0070671_100021155 3300005355 Bacteria 5311
9 Ga0070709_10005521 3300005434 Bacteria 6848
10 Ga0070713_100000025 3300005436 Bacteria 96581
11 Ga0070713_100053274 3300005436 Bacteria 3352
12 Ga0070710_10005471 3300005437 Bacteria 6035
13 Ga0070711_100000370 3300005439 Bacteria 23238
14 Ga0070711_100006297 3300005439 Bacteria 7145
15 Ga0070694_100015916 3300005444 Bacteria 4731
16 Ga0070708_100000736 3300005445 Bacteria 24804
17 Ga0070685_10003627 3300005466 Bacteria 7837
18 Ga0070706_100000009 3300005467 Bacteria 210456
19 Ga0070706_100010271 3300005467 Bacteria 8697
20 Ga0070706_100018979 3300005467 Bacteria 6343
21 Ga0070706_100024320 3300005467 Bacteria 5575
22 Ga0070707_100000428 3300005468 Bacteria 41679
23 Ga0070698_100003116 3300005471 Bacteria 18282
24 Ga0070698_100011603 3300005471 Bacteria 9351
25 Ga0070698_100032453 3300005471 Bacteria 5409
26 Ga0070699_100004397 3300005518 Bacteria 12458
27 Ga0070665_100000139 3300005548 Bacteria 135881
28 Ga0068857_100021014 3300005577 Bacteria 5744
29 Ga0068859_100046848 3300005617 Bacteria 4342
30 Ga0068862_100000326 3300005844 Bacteria 51888
31 Ga0068862_100007503 3300005844 Bacteria 9036
32 Ga0081539_10000071 3300005985 Bacteria 233094
33 Ga0070717_10003313 3300006028 Bacteria 11507
34 Ga0070717_10004178 3300006028 Bacteria 10408
35 Ga0070717_10067800 3300006028 Bacteria 2969
36 Ga0070712_100002013 3300006175 Bacteria 12446
37 Ga0075430_100034765 3300006846 Bacteria 4278
38 Ga0075430_100038319 3300006846 Bacteria 4060
39 Ga0075431_100023069 3300006847 Bacteria 6362
40 Ga0075434_100017145 3300006871 Bacteria 6971
41 Ga0075434_100017291 3300006871 Bacteria 6945
42 Ga0075429_100007006 3300006880 Bacteria 9792
43 Ga0075436_100006717 3300006914 Bacteria 7875
44 Ga0097620_100046847 3300006931 Bacteria 4342
45 Ga0105240_10000063 3300009093 Bacteria 215936
46 Ga0105240_10000071 3300009093 Bacteria 204197
47 Ga0114129_10006675 3300009147 Bacteria 16391
48 Ga0114129_10018939 3300009147 Bacteria 9807
49 Ga0105238_10000043 3300009551 Bacteria 154120
50 Ga0105249_10006451 3300009553 Bacteria 10204
51 Ga0157375_10000021 3300013308 Bacteria 249616
52 Ga0163163_10009662 3300014325 Bacteria 8628
53 Ga0163163_10104475 3300014325 Bacteria 2858
54 Ga0157380_10006955 3300014326 Bacteria 8004
55 Ga0182005_1000190 3300015265 Bacteria 41776
56 Ga0213875_10006903 3300021388 Bacteria 5917
57 Ga0207699_10010094 3300025906 Bacteria 4724
58 Ga0207684_10000059 3300025910 Bacteria 210483
59 Ga0207684_10016046 3300025910 Bacteria 6431
60 Ga0207684_10025207 3300025910 Bacteria 5069
61 Ga0207695_10000068 3300025913 Bacteria 324859
62 Ga0207695_10000133 3300025913 Bacteria 222573
63 Ga0207693_10007164 3300025915 Bacteria 9194
64 Ga0207693_10009984 3300025915 Bacteria 7718
65 Ga0207663_10000370 3300025916 Bacteria 19643
66 Ga0207663_10027641 3300025916 Bacteria 3310
67 Ga0207646_10002969 3300025922 Bacteria 19630
68 Ga0207646_10029859 3300025922 Bacteria 4949
69 Ga0207681_10000078 3300025923 Bacteria 87730
70 Ga0207694_10000065 3300025924 Bacteria 131061
71 Ga0207700_10002526 3300025928 Bacteria 10502
72 Ga0207644_10031689 3300025931 Bacteria 3685
73 Ga0207706_10037767 3300025933 Bacteria 4286
74 Ga0207665_10004762 3300025939 Bacteria 9025
75 Ga0207691_10018928 3300025940 Bacteria 6523
76 Ga0207712_10002111 3300025961 Bacteria 13007
77 Ga0207674_10002455 3300026116 Bacteria 23398
78 Ga0207675_100016725 3300026118 Bacteria 6850
79 Ga0268266_10000248 3300028379 Bacteria 91383
80 Ga0268265_10000138 3300028380 Bacteria 92824
81 Ga0265334_10009554 3300028573 Bacteria 4103
82 Ga0265316_10007112 3300031344 Bacteria 10586
83 Ga0307410_10041102 3300031852 Unclassified 3047
84 Ga0373954_0003399 3300035118 Bacteria 6740
85 Ga0436364_0483965 3300037853 Bacteria 9332
86 Ga0436364_1260602 3300037853 Bacteria 5983
87 Ga0395901_0027704 3300038443 Bacteria 5825
88 Ga0436365_0170630 3300039437 Bacteria 2960
89 Ga0436362_0171288 3300039453 Bacteria 5025
90 Ga0453683_0018849 3300044673 Bacteria 4427
91 Ga0466965_0033381 3300044683 Bacteria 2515
92 Ga0453684_0007191 3300044712 Bacteria 20670
93 Ga0453684_0016157 3300044712 Bacteria 11703
94 Ga0453684_0049276 3300044712 Bacteria 5557
95 Ga0453684_0059122 3300044712 Bacteria 4945
96 Ga0466970_0028070 3300044765 Bacteria 2956
97 Ga0495633_0001379 3300046558 Bacteria 18976
98 Ga0496121_0000043 3300048924 Bacteria 341882
99 Ga0501292_002271 3300049515 Bacteria 2461
100 Ga0501034_0006255 3300049571 Bacteria 12816
101 Ga0501075_0008887 3300049591 Bacteria 7007
102 Ga0501077_0000167 3300049593 Bacteria 37341
103 Ga0501080_0004734 3300049742 Bacteria 12134
104 Ga0501083_0007144 3300049744 Bacteria 7929
105 nmdc:mga05p37_76514_c1 3300050507 Bacteria 4120
106 nmdc:mga05p37_89687_c1 3300050507 Bacteria 3789
107 nmdc:mga0qj67_44917_c1 3300050509 Bacteria 3485
108 nmdc:mga0n895_23814_c1 3300050512 Bacteria 5761
109 nmdc:mga08x19_3134_c1 3300050514 Bacteria 9940
110 Ga0500628_000365 3300053129 Bacteria 8625
111 Ga0500568_0003483 3300053139 Bacteria 8749
112 Ga0501082_0001200 3300060353 Bacteria 22795
113 Ga0530510_0020474 3300061734 Bacteria 4703
114 2526061225 2524614857 Bacteria 4146328
115 2740065135 2739367875 Bacteria 4157290
116 2819577955 2818991442 Bacteria 8318214
117 2821139114 2821136567 Bacteria 8080116
118 2904473325 2904467357 Bacteria 8057758
119 Ga0075431_100025633
120 JGI25406J46586_10014670
121 rootL2_10043359
122 Ga0065707_10002558
123 Ga0070689_100001787
124 Ga0070692_10000747
125 Ga0070669_100000092
126 Ga0070671_100021155
127 Ga0070709_10005521
128 Ga0070713_100000025
129 Ga0070713_100053274
130 Ga0070710_10005471
131 Ga0070711_100000370
132 Ga0070711_100006297
133 Ga0070694_100015916
134 Ga0070708_100000736
135 Ga0070685_10003627
136 Ga0070706_100000009
137 Ga0070706_100010271
138 Ga0070706_100018979
139 Ga0070706_100024320
140 Ga0070707_100000428
141 Ga0070698_100003116
142 Ga0070698_100011603
143 Ga0070698_100032453
144 Ga0070699_100004397
145 Ga0070665_100000139
146 Ga0068857_100021014
147 Ga0068859_100046848
148 Ga0068862_100000326
149 Ga0068862_100007503
150 Ga0081539_10000071
151 Ga0070717_10003313
152 Ga0070717_10004178
153 Ga0070717_10067800
154 Ga0070712_100002013
155 Ga0075430_100034765
156 Ga0075430_100038319
157 Ga0075431_100023069
158 Ga0075434_100017145
159 Ga0075434_100017291
160 Ga0075429_100007006
161 Ga0075436_100006717
162 Ga0097620_100046847
163 Ga0105240_10000063
164 Ga0105240_10000071
165 Ga0114129_10006675
166 Ga0114129_10018939
167 Ga0105238_10000043
168 Ga0105249_10006451
169 Ga0157375_10000021
170 Ga0163163_10009662
171 Ga0163163_10104475
172 Ga0157380_10006955
173 Ga0182005_1000190
174 Ga0213875_10006903
175 Ga0207699_10010094
176 Ga0207684_10000059
177 Ga0207684_10016046
178 Ga0207684_10025207
179 Ga0207695_10000068
180 Ga0207695_10000133
181 Ga0207693_10007164
182 Ga0207693_10009984
183 Ga0207663_10000370
184 Ga0207663_10027641
185 Ga0207646_10002969
186 Ga0207646_10029859
187 Ga0207681_10000078
188 Ga0207694_10000065
189 Ga0207700_10002526
190 Ga0207644_10031689
191 Ga0207706_10037767
192 Ga0207665_10004762
193 Ga0207691_10018928
194 Ga0207712_10002111
195 Ga0207674_10002455
196 Ga0207675_100016725
197 Ga0268266_10000248
198 Ga0268265_10000138
199 Ga0265334_10009554
200 Ga0265316_10007112
201 Ga0307410_10041102
202 Ga0373954_0003399
203 Ga0436364_0483965
204 Ga0436364_1260602
205 Ga0395901_0027704
206 Ga0436365_0170630
207 Ga0436362_0171288
208 Ga0453683_0018849
209 Ga0466965_0033381
210 Ga0453684_0007191
211 Ga0453684_0016157
212 Ga0453684_0049276
213 Ga0453684_0059122
214 Ga0466970_0028070
215 Ga0495633_0001379
216 Ga0496121_0000043
217 Ga0501292_002271
218 Ga0501034_0006255
219 Ga0501075_0008887
220 Ga0501077_0000167
221 Ga0501080_0004734
222 Ga0501083_0007144
223 nmdc:mga05p37_76514_c1
224 nmdc:mga05p37_89687_c1
225 nmdc:mga0qj67_44917_c1
226 nmdc:mga0n895_23814_c1
227 nmdc:mga08x19_3134_c1
228 Ga0500628_000365
229 Ga0500568_0003483
230 Ga0501082_0001200
231 Ga0530510_0020474
232 2526061225
233 2740065135
234 2819577955
235 2821139114
236 2904473325

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF16542

PNKP_ligase

PNKP adenylyltransferase domain, ligase domain

485

877

0.98

PF13671

AAA_33

AAA domain

10

144

0.87

PF00149

Metallophos

Calcineurin-like phosphoesterase

180

391

0.59

Structural Annotation

Top 5 Hits

ID Description Score Start End
4gp6-assembly1.cif.gz_B-2 polynucleotide kinase 0.9847 1 169
4mde-assembly1.cif.gz_A structure of bacterial polynucleotide kinase product complex bound to gdp and dna 0.9812 1 170
4jt2-assembly1.cif.gz_A structure of clostridium thermocellum polynucleotide kinase bound to ctp 0.9759 1 170
4gp6-assembly1.cif.gz_B-2 polynucleotide kinase 0.9733 1 169
4mde-assembly1.cif.gz_A structure of bacterial polynucleotide kinase product complex bound to gdp and dna 0.97 1 170
ID Description Score Start End Superfamily
4gp6A00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9834 1 170 3.40.50.300
4gp6A00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9721 1 170 3.40.50.300
4j6oB00 Alpha Beta;4-Layer Sandwich;Purple Acid Phosphatase; chain A, domain 2;Metallo-dependent phosphatases 0.941 172 416 3.60.21.10
3ty8A01 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;DNA ligase/mRNA capping enzyme 0.9246 471 848 3.30.470.30
3ty8A01 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;DNA ligase/mRNA capping enzyme 0.9162 471 848 3.30.470.30
ID Description Score Start End GO Terms
AF-A0A7V3D2Y3-F1-model_v4 Polynucleotide kinase-phosphatase 0.9983 1 121 GO:0016301
AF-A0A6G3XR03-F1-model_v4 AAA family ATPase 0.9957 5 110
AF-A0A7C6MHZ5-F1-model_v4 AAA family ATPase 0.9935 1 120
AF-A0A435MY75-F1-model_v4 deleted 0.992 5 164
AF-A0A225E7W2-F1-model_v4 Serine/threonine protein phosphatase 0.9916 1 143

Map