F104872

General Info

Members Datasets Scaffolds Average Seq Length
120 99 240 304

Family's Representative Sequence

Representative Sequence 3300005435|Ga0070714_100552053|Ga0070714_1005520531
Length 328
Sequence MRIAITGGTGLVGHNVAVLLSAAGHEVVLVARGRNRVHPAVAGACLIRAGLEDAPALARACAGCEAVVHCAGINRELGEQIYARVHVQGTRNVVAAAREAGVRKLVLLSFLRARPDCGSAYHESKWAAEEMVRGSGLDYSILKCGVIYGKGDHMLDHLSHAFYTFPVFGLVGFRDKPIRPNAVEDVARIIGACVLQGALSRQTVAVVGPEELTLRQAVRRVARVVGRRPFMFPLPVWFHYVLGWCLERLMKVPMVSLAQVRILSEGLGEPSSPCEPMPAELASRIPFSEEQIRKGLPAPGRFGLRDLRGCGACARAHPHKTIVFLEMP

Samples

Sample ID Description Type Environment
1 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
2 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
3 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
4 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
5 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
8 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
9 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
10 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
11 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
12 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
13 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
14 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
15 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
16 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
17 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
18 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
19 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
20 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
21 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
22 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
23 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
24 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
25 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
26 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
27 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
28 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
29 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
30 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
31 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
32 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
33 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
34 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
35 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
36 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
37 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
38 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
39 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
40 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
56 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
57 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
58 3300041443 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaG Metagenome Rhizoplane
59 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
60 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
61 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
62 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
63 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
64 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
65 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
66 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
67 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
68 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
69 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
70 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
71 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
72 3300049515 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F22_B_5_drought Metagenome Rhizosphere
73 3300049521 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E25_B_7_drought Metagenome Rhizosphere
74 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
75 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
76 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
77 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
78 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
79 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
80 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
81 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
82 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
83 2643221619 Agromyces sp. Root81 Isolate Unclassified
84 2808606372 Agromyces sp. 23-23 Isolate Unclassified
85 2857729791 Plantibacter sp. R-72288 Isolate Unclassified
86 2904430863 Curtobacterium oceanosedimentum 1519 Isolate Rhizosphere
87 2904501621 Curtobacterium sp. 1909 Isolate Unclassified
88 2904776348 Paenarthrobacter sp. 1092 Isolate Rhizosphere
89 2908674828 Curtobacterium sp. 1517 Isolate Rhizosphere
90 2919055335 Leifsonia sp. 1010 Isolate Rhizosphere
91 2919059106 Arthrobacter sp. 1088 Isolate Rhizosphere
92 2919395869 Microbacterium resistens 2980 Isolate Unclassified
93 2919523602 Leifsonia shinshuensis 3821 Isolate Unclassified
94 2928121344 Plantibacter flavus 1756 Isolate Rhizosphere
95 2928153084 Leifsonia sp. 563 Isolate Unclassified
96 2935409751 Agromyces sp. PvR057 Isolate Rhizosphere
97 2946041624 Microbacterium natoriense W4I9-1 Isolate Rhizosphere
98 2946080515 Microbacterium sp. W4I20 Isolate Rhizosphere
99 8057345674 Herbiconiux aconitum CPCC 205763 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 84.17
Metatranscriptomes 1.67
Isolates 14.17

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.67
Nodule 0
Rhizoplane 4.17
Rhizosphere 72.5
Stem 0
Stem Tuber 0
Unclassified 6.67

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070714_100552053 3300005435 Bacteria 1103
2 JGI24737J22298_10011439 3300001990 Bacteria 2909
3 JGI24735J21928_10006815 3300002067 Bacteria 3744
4 JGI25154J39366_1003190 3300002738 Bacteria 3612
5 Ga0006562J51391_1088149 3300003578 Bacteria 4720
6 Ga0070658_10000680 3300005327 Bacteria 29386
7 Ga0070690_100067044 3300005330 Bacteria 2325
8 Ga0070675_100001665 3300005354 Bacteria 16415
9 Ga0070675_100008023 3300005354 Bacteria 8185
10 Ga0070675_100304043 3300005354 Bacteria 1406
11 Ga0070688_100005963 3300005365 Bacteria 6455
12 Ga0070708_100054057 3300005445 Bacteria 3565
13 Ga0070708_100060014 3300005445 Bacteria 3393
14 Ga0070708_100070535 3300005445 Bacteria 3143
15 Ga0070663_100031009 3300005455 Bacteria 3669
16 Ga0070685_10013061 3300005466 Bacteria 4372
17 Ga0070706_100013473 3300005467 Bacteria 7562
18 Ga0070706_100126496 3300005467 Unclassified 2383
19 Ga0070707_100022806 3300005468 Bacteria 5919
20 Ga0070707_100023888 3300005468 Bacteria 5782
21 Ga0070698_100000601 3300005471 Bacteria 38712
22 Ga0070698_100002214 3300005471 Bacteria 21520
23 Ga0070698_100110559 3300005471 Bacteria 2713
24 Ga0070699_100116539 3300005518 Bacteria 2348
25 Ga0070686_100193256 3300005544 Bacteria 1454
26 Ga0068857_100235314 3300005577 Unclassified 1676
27 Ga0068852_100002023 3300005616 Bacteria 13810
28 Ga0068864_100262081 3300005618 Unclassified 1608
29 Ga0068863_100112718 3300005841 Bacteria 2590
30 Ga0068863_100330875 3300005841 Unclassified 1481
31 Ga0068858_100000449 3300005842 Bacteria 43159
32 Ga0068860_100083497 3300005843 Unclassified 3038
33 Ga0068862_100034008 3300005844 Bacteria 4311
34 Ga0075436_100001178 3300006914 Bacteria 17753
35 Ga0105244_10061561 3300009036 Bacteria 1888
36 Ga0105248_10001422 3300009177 Bacteria 26745
37 Ga0105237_10015807 3300009545 Bacteria 7850
38 Ga0105246_10032456 3300011119 Bacteria 3463
39 Ga0105246_10140926 3300011119 Bacteria 1813
40 Ga0105246_10494597 3300011119 Bacteria 1037
41 Ga0157370_10004788 3300013104 Bacteria 15386
42 Ga0157369_10054194 3300013105 Bacteria 4331
43 Ga0157369_10108111 3300013105 Bacteria 2958
44 Ga0157369_10226531 3300013105 Bacteria 1955
45 Ga0157369_10474105 3300013105 Bacteria 1295
46 Ga0157375_10189024 3300013308 Bacteria 2214
47 Ga0163163_10089944 3300014325 Bacteria 3083
48 Ga0157380_10106142 3300014326 Bacteria 2350
49 Ga0157380_10588266 3300014326 Bacteria 1099
50 Ga0157377_10030248 3300014745 Bacteria 2932
51 Ga0197907_11302554 3300020069 Bacteria 1184
52 Ga0209646_1000014 3300025246 Bacteria 550484
53 Ga0209677_100284 3300025253 Bacteria 33586
54 Ga0209051_1003661 3300025303 Bacteria 9948
55 Ga0207655_1002155 3300025728 Bacteria 16405
56 Ga0207705_10000001 3300025909 Bacteria 2061880
57 Ga0207684_10014559 3300025910 Bacteria 6776
58 Ga0207684_10014784 3300025910 Bacteria 6721
59 Ga0207646_10004344 3300025922 Bacteria 15452
60 Ga0207646_10077724 3300025922 Bacteria 2966
61 Ga0207659_10305067 3300025926 Bacteria 1309
62 Ga0207711_10000546 3300025941 Bacteria 38381
63 Ga0207667_10089738 3300025949 Bacteria 3176
64 Ga0207703_10004192 3300026035 Bacteria 11885
65 Ga0207639_10047487 3300026041 Bacteria 3245
66 Ga0207678_10038558 3300026067 Bacteria 4152
67 Ga0207676_10438899 3300026095 Bacteria 1228
68 Ga0207674_10358376 3300026116 Unclassified 1410
69 Ga0207698_10000432 3300026142 Bacteria 24107
70 Ga0268265_10025684 3300028380 Bacteria 4185
71 Ga0268264_10054150 3300028381 Unclassified 3349
72 Ga0307518_10220389 3300031838 Bacteria 1239
73 Ga0307406_10009692 3300031901 Bacteria 5416
74 Ga0307406_10304197 3300031901 Bacteria 1226
75 Ga0395899_0392141 3300037312 Bacteria 920
76 Ga0451789_0900417 3300041443 Bacteria 1350
77 Ga0451793_1536041 3300041452 Unclassified 1080
78 Ga0451576_0277798 3300045051 Bacteria 1751
79 Ga0495627_001474 3300046453 Bacteria 13672
80 Ga0496100_0146258 3300048903 Bacteria 1681
81 Ga0496114_0011021 3300048917 Bacteria 7210
82 Ga0496115_0036783 3300048918 Bacteria 3877
83 Ga0496117_0001674 3300048920 Bacteria 30988
84 Ga0496117_0084497 3300048920 Bacteria 2070
85 Ga0496118_0040974 3300048921 Bacteria 3674
86 Ga0496121_0000046 3300048924 Bacteria 335942
87 Ga0496121_0311425 3300048924 Bacteria 1064
88 Ga0496122_0020000 3300048925 Bacteria 6084
89 Ga0496123_0012161 3300048926 Bacteria 7369
90 Ga0496125_0020433 3300048928 Bacteria 6215
91 Ga0496126_0212891 3300048929 Bacteria 1626
92 Ga0501292_016422 3300049515 Bacteria 1164
93 Ga0501298_019752 3300049521 Bacteria 1250
94 Ga0501034_0101779 3300049571 Bacteria 2866
95 Ga0501070_0000551 3300049586 Bacteria 34237
96 nmdc:mga00v17_22970_c1 3300050491 Bacteria 3605
97 nmdc:mga06r32_255468_c1 3300050510 Bacteria 1740
98 nmdc:mga08x19_9213_c1 3300050514 Bacteria 5897
99 Ga0500635_0000002 3300053080 Bacteria 265613
100 Ga0500635_0002155 3300053080 Bacteria 4843
101 Ga0500556_0000001 3300053104 Bacteria 1135060
102 Ga0500559_0072460 3300053136 Bacteria 1553
103 Ga0500616_0000205 3300053153 Bacteria 96713
104 2644113578 2643221619 Bacteria 4158469
105 2808903399 2808606372 Bacteria 4649509
106 2857731213 2857729791 Bacteria 4040535
107 2904433756 2904430863 Bacteria 3486923
108 2904504163 2904501621 Bacteria 3401437
109 2904779011 2904776348 Bacteria 4658726
110 2908677125 2908674828 Bacteria 3382763
111 2919057021 2919055335 Bacteria 3875751
112 2919061550 2919059106 Bacteria 4991624
113 2919398668 2919395869 Bacteria 3704152
114 2919526719 2919523602 Bacteria 3788128
115 2928122234 2928121344 Bacteria 3972376
116 2928154777 2928153084 Bacteria 4020257
117 2935410418 2935409751 Bacteria 4179611
118 2946041654 2946041624 Bacteria 4191385
119 2946083641 2946080515 Bacteria 4310960
120 8057346248 8057345674 Bacteria 4160394
121 Ga0070714_100552053
122 JGI24737J22298_10011439
123 JGI24735J21928_10006815
124 JGI25154J39366_1003190
125 Ga0006562J51391_1088149
126 Ga0070658_10000680
127 Ga0070690_100067044
128 Ga0070675_100001665
129 Ga0070675_100008023
130 Ga0070675_100304043
131 Ga0070688_100005963
132 Ga0070708_100054057
133 Ga0070708_100060014
134 Ga0070708_100070535
135 Ga0070663_100031009
136 Ga0070685_10013061
137 Ga0070706_100013473
138 Ga0070706_100126496
139 Ga0070707_100022806
140 Ga0070707_100023888
141 Ga0070698_100000601
142 Ga0070698_100002214
143 Ga0070698_100110559
144 Ga0070699_100116539
145 Ga0070686_100193256
146 Ga0068857_100235314
147 Ga0068852_100002023
148 Ga0068864_100262081
149 Ga0068863_100112718
150 Ga0068863_100330875
151 Ga0068858_100000449
152 Ga0068860_100083497
153 Ga0068862_100034008
154 Ga0075436_100001178
155 Ga0105244_10061561
156 Ga0105248_10001422
157 Ga0105237_10015807
158 Ga0105246_10032456
159 Ga0105246_10140926
160 Ga0105246_10494597
161 Ga0157370_10004788
162 Ga0157369_10054194
163 Ga0157369_10108111
164 Ga0157369_10226531
165 Ga0157369_10474105
166 Ga0157375_10189024
167 Ga0163163_10089944
168 Ga0157380_10106142
169 Ga0157380_10588266
170 Ga0157377_10030248
171 Ga0197907_11302554
172 Ga0209646_1000014
173 Ga0209677_100284
174 Ga0209051_1003661
175 Ga0207655_1002155
176 Ga0207705_10000001
177 Ga0207684_10014559
178 Ga0207684_10014784
179 Ga0207646_10004344
180 Ga0207646_10077724
181 Ga0207659_10305067
182 Ga0207711_10000546
183 Ga0207667_10089738
184 Ga0207703_10004192
185 Ga0207639_10047487
186 Ga0207678_10038558
187 Ga0207676_10438899
188 Ga0207674_10358376
189 Ga0207698_10000432
190 Ga0268265_10025684
191 Ga0268264_10054150
192 Ga0307518_10220389
193 Ga0307406_10009692
194 Ga0307406_10304197
195 Ga0395899_0392141
196 Ga0451789_0900417
197 Ga0451793_1536041
198 Ga0451576_0277798
199 Ga0495627_001474
200 Ga0496100_0146258
201 Ga0496114_0011021
202 Ga0496115_0036783
203 Ga0496117_0001674
204 Ga0496117_0084497
205 Ga0496118_0040974
206 Ga0496121_0000046
207 Ga0496121_0311425
208 Ga0496122_0020000
209 Ga0496123_0012161
210 Ga0496125_0020433
211 Ga0496126_0212891
212 Ga0501292_016422
213 Ga0501298_019752
214 Ga0501034_0101779
215 Ga0501070_0000551
216 nmdc:mga00v17_22970_c1
217 nmdc:mga06r32_255468_c1
218 nmdc:mga08x19_9213_c1
219 Ga0500635_0000002
220 Ga0500635_0002155
221 Ga0500556_0000001
222 Ga0500559_0072460
223 Ga0500616_0000205
224 2644113578
225 2808903399
226 2857731213
227 2904433756
228 2904504163
229 2904779011
230 2908677125
231 2919057021
232 2919061550
233 2919398668
234 2919526719
235 2928122234
236 2928154777
237 2935410418
238 2946041654
239 2946083641
240 8057346248

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13460

NAD_binding_10

NAD(P)H-binding

7

158

0.88

PF05368

NmrA

NmrA-like family

3

260

0.87

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

3

166

0.84

PF01073

3Beta_HSD

3-beta hydroxysteroid dehydrogenase/isomerase family

4

117

0.8

Structural Annotation

Top 5 Hits

ID Description Score Start End
7w35-assembly1.cif.gz_J deactive state ci from dq-nadh dataset, subclass 3 0.8853 3 242
6zkg-assembly1.cif.gz_d complex i with nadh, closed 0.8785 3 242
7r41-assembly1.cif.gz_P bovine complex i in the presence of im1761092, active class i (composite map) 0.8716 3 242
7qso-assembly1.cif.gz_P bovine complex i in lipid nanodisc, state 3 (slack) 0.8711 1 217
7v2f-assembly1.cif.gz_J deactive state complex i from q10-nadh dataset 0.8624 3 209
ID Description Score Start End Superfamily
af_Q9SK66_71_329_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8835 4 230 3.40.50.720
af_A0A2R8RUA9_55_239_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8816 1 147 3.40.50.720
af_Q9DC69_47_264_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8774 3 178 3.40.50.720
af_Q559Z0_43_331_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8765 5 242 3.40.50.720
af_A0A1D8PJA6_54_340_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8428 3 242 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A382TDD3-F1-model_v4 RmlD-like substrate binding domain-containing protein 0.9146 33 242 GO:0044877
GO:1901006
AF-A0A7C2C8B5-F1-model_v4 NAD-dependent epimerase/dehydratase family protein 0.9113 3 240 GO:0044877
GO:1901006
AF-T0ZIQ2-F1-model_v4 NADH dehydrogenase (Ubiquinone) 0.9112 54 206 GO:0044877
GO:1901006
AF-A0A2J1DU93-F1-model_v4 Epimerase 0.9103 2 211 GO:0044877
GO:1901006
AF-A0A0Q9F8D4-F1-model_v4 deleted 0.9079 33 206

Map