F122425

General Info

Members Datasets Scaffolds Average Seq Length
124 47 208 336

Family's Representative Sequence

Representative Sequence 3300010375|Ga0105239_10096345|Ga0105239_100963452
Length 380
Sequence MRIVGITPEPMANSDYRVRLPIEALADRGHSTEVVQWDFYRGGDPPPLAALRQADVVHIWRLHESPVQRLAEALRQHGVAVVWDNDDDLLRLPPGKVPKGVRPAKERTNDELVAIMKAAHVVTTTCQELARRFRRAAGVDVQVIGNYVEARSLRRPAAAPREELVVGWVAGGEHKIDLKQLRLRAALDRVLEQHPYVRVMSVGLPLGLRSERYLAHESVPLAQLPSTLASFDIGIAPLADVSFNRVRSDVKLKEYAAAGLPWLASPIGPYRDRGEEQGGRLVRDPFWQKDLEALIVDDAARDHLRERAIAWGRTQTIEHHAHLWESVFERATTRARGGQAAPAEREPELEHAAEVDHSQRDQVEPTRPERRGLVRRLMRR

Samples

Sample ID Description Type Environment
1 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
4 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
5 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
6 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
7 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
8 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
9 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
10 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
11 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
12 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
13 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
14 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
15 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
16 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
17 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
18 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
19 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
20 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
21 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
22 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
23 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
33 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
34 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
35 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
36 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
37 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
38 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
39 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
40 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
41 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
42 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
43 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
44 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
45 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
46 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
47 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.19
Metatranscriptomes 0.81
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 4.84
Rhizosphere 95.16
Stem 0
Stem Tuber 0
Unclassified 2.42

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0105239_10096345 3300010375 Bacteria 3269
2 Ga0070683_100055639 3300005329 Bacteria 3672
3 Ga0070682_100293497 3300005337 Bacteria 1190
4 Ga0070660_100005819 3300005339 Bacteria 8537
5 Ga0070660_100184655 3300005339 Bacteria 1688
6 Ga0070692_10000906 3300005345 Bacteria 10033
7 Ga0070692_10006383 3300005345 Bacteria 5119
8 Ga0070669_100001524 3300005353 Bacteria 16764
9 Ga0070669_100015912 3300005353 Bacteria 5365
10 Ga0070669_100043312 3300005353 Bacteria 3278
11 Ga0070659_100000003 3300005366 Bacteria 309142
12 Ga0070659_100000031 3300005366 Bacteria 125048
13 Ga0070659_100000037 3300005366 Bacteria 113379
14 Ga0070659_100000071 3300005366 Bacteria 79797
15 Ga0070714_100000026 3300005435 Bacteria 145396
16 Ga0070714_100000091 3300005435 Bacteria 76316
17 Ga0070714_100000560 3300005435 Bacteria 26744
18 Ga0070714_100001778 3300005435 Bacteria 15717
19 Ga0070714_100007579 3300005435 Bacteria 8454
20 Ga0070714_100050826 3300005435 Bacteria 3533
21 Ga0070714_100087804 3300005435 Bacteria 2720
22 Ga0070714_100148359 3300005435 Bacteria 2111
23 Ga0070710_10000001 3300005437 Bacteria 552187
24 Ga0070710_10000004 3300005437 Bacteria 270399
25 Ga0070710_10000005 3300005437 Bacteria 238049
26 Ga0070705_100001859 3300005440 Bacteria 10887
27 Ga0070705_100019915 3300005440 Bacteria 3539
28 Ga0070705_100076168 3300005440 Bacteria 2045
29 Ga0070681_10107124 3300005458 Bacteria 2736
30 Ga0070707_100177360 3300005468 Bacteria 2077
31 Ga0070717_10000005 3300006028 Bacteria 357819
32 Ga0070717_10000013 3300006028 Bacteria 228046
33 Ga0070717_10000019 3300006028 Bacteria 178051
34 Ga0070712_100000061 3300006175 Bacteria 54506
35 Ga0075429_100008426 3300006880 Bacteria 8972
36 Ga0075429_100010534 3300006880 Bacteria 7995
37 Ga0105240_10039737 3300009093 Bacteria 6022
38 Ga0105240_10068305 3300009093 Bacteria 4402
39 Ga0105240_10115361 3300009093 Bacteria 3243
40 Ga0105240_10195165 3300009093 Bacteria 2378
41 Ga0105247_10070614 3300009101 Bacteria 2182
42 Ga0105249_10263457 3300009553 Unclassified 1714
43 Ga0105239_10330103 3300010375 Bacteria 1721
44 Ga0105246_10087895 3300011119 Bacteria 2232
45 Ga0157375_10310930 3300013308 Unclassified 1740
46 Ga0157376_10019315 3300014969 Bacteria 5249
47 Ga0206354_10227748 3300020081 Bacteria 1508
48 Ga0207692_10000002 3300025898 Bacteria 453100
49 Ga0207692_10000003 3300025898 Bacteria 431531
50 Ga0207692_10000004 3300025898 Bacteria 413600
51 Ga0207695_10044846 3300025913 Bacteria 4699
52 Ga0207695_10060343 3300025913 Bacteria 3926
53 Ga0207695_10431197 3300025913 Bacteria 1202
54 Ga0207693_10000201 3300025915 Bacteria 54465
55 Ga0207657_10041479 3300025919 Bacteria 4069
56 Ga0207657_10045009 3300025919 Bacteria 3876
57 Ga0207657_10106850 3300025919 Bacteria 2315
58 Ga0207646_10295490 3300025922 Bacteria 1464
59 Ga0207681_10003952 3300025923 Bacteria 9191
60 Ga0207681_10010990 3300025923 Bacteria 5561
61 Ga0207681_10011457 3300025923 Bacteria 5449
62 Ga0207664_10000004 3300025929 Bacteria 493014
63 Ga0207664_10000012 3300025929 Bacteria 278872
64 Ga0207664_10000498 3300025929 Bacteria 27964
65 Ga0207664_10000814 3300025929 Bacteria 21180
66 Ga0207664_10028036 3300025929 Bacteria 4277
67 Ga0207664_10034607 3300025929 Bacteria 3891
68 Ga0207664_10128661 3300025929 Bacteria 2129
69 Ga0207690_10000057 3300025932 Bacteria 100648
70 Ga0207690_10000093 3300025932 Bacteria 74491
71 Ga0207690_10000215 3300025932 Bacteria 43949
72 Ga0207690_10000292 3300025932 Bacteria 35582
73 Ga0207661_10263452 3300025944 Bacteria 1536
74 Ga0265326_10000032 3300028558 Bacteria 94371
75 Ga0265326_10000061 3300028558 Bacteria 63914
76 Ga0265326_10000094 3300028558 Bacteria 45864
77 Ga0265319_1002184 3300028563 Bacteria 10897
78 Ga0265319_1008174 3300028563 Bacteria 4612
79 Ga0265319_1008655 3300028563 Bacteria 4431
80 Ga0265334_10000002 3300028573 Bacteria 325014
81 Ga0265334_10000134 3300028573 Bacteria 46634
82 Ga0265334_10000153 3300028573 Bacteria 42799
83 Ga0265336_10002671 3300028666 Bacteria 7225
84 Ga0265336_10009341 3300028666 Bacteria 3397
85 Ga0265338_10007052 3300028800 Bacteria 14099
86 Ga0265338_10007206 3300028800 Bacteria 13899
87 Ga0265338_10009274 3300028800 Bacteria 11772
88 Ga0265338_10036829 3300028800 Unclassified 4672
89 Ga0265324_10001545 3300029957 Bacteria 12909
90 Ga0265324_10002961 3300029957 Bacteria 8309
91 Ga0265324_10003744 3300029957 Bacteria 7114
92 Ga0265340_10065805 3300031247 Bacteria 1726
93 Ga0265314_10149555 3300031711 Bacteria 1434
94 Ga0466966_0031748 3300044684 Bacteria 3425
95 Ga0495596_0045227 3300046500 Bacteria 1731
96 Ga0495596_0046007 3300046500 Bacteria 1715
97 Ga0495672_0118463 3300047320 Bacteria 1411
98 Ga0496101_0000575 3300048904 Bacteria 22483
99 Ga0496108_0276918 3300048911 Bacteria 1461
100 Ga0496112_0000659 3300048915 Bacteria 24013
101 Ga0496112_0107832 3300048915 Bacteria 2755
102 Ga0496113_0025456 3300048916 Bacteria 4218
103 nmdc:mga09592_12866_c1 3300050508 Bacteria 6822
104 nmdc:mga09592_9221_c1 3300050508 Bacteria 8025
105 Ga0105239_10096345
106 Ga0070683_100055639
107 Ga0070682_100293497
108 Ga0070660_100005819
109 Ga0070660_100184655
110 Ga0070692_10000906
111 Ga0070692_10006383
112 Ga0070669_100001524
113 Ga0070669_100015912
114 Ga0070669_100043312
115 Ga0070659_100000003
116 Ga0070659_100000031
117 Ga0070659_100000037
118 Ga0070659_100000071
119 Ga0070714_100000026
120 Ga0070714_100000091
121 Ga0070714_100000560
122 Ga0070714_100001778
123 Ga0070714_100007579
124 Ga0070714_100050826
125 Ga0070714_100087804
126 Ga0070714_100148359
127 Ga0070710_10000001
128 Ga0070710_10000004
129 Ga0070710_10000005
130 Ga0070705_100001859
131 Ga0070705_100019915
132 Ga0070705_100076168
133 Ga0070681_10107124
134 Ga0070707_100177360
135 Ga0070717_10000005
136 Ga0070717_10000013
137 Ga0070717_10000019
138 Ga0070712_100000061
139 Ga0075429_100008426
140 Ga0075429_100010534
141 Ga0105240_10039737
142 Ga0105240_10068305
143 Ga0105240_10115361
144 Ga0105240_10195165
145 Ga0105247_10070614
146 Ga0105249_10263457
147 Ga0105239_10330103
148 Ga0105246_10087895
149 Ga0157375_10310930
150 Ga0157376_10019315
151 Ga0206354_10227748
152 Ga0207692_10000002
153 Ga0207692_10000003
154 Ga0207692_10000004
155 Ga0207695_10044846
156 Ga0207695_10060343
157 Ga0207695_10431197
158 Ga0207693_10000201
159 Ga0207657_10041479
160 Ga0207657_10045009
161 Ga0207657_10106850
162 Ga0207646_10295490
163 Ga0207681_10003952
164 Ga0207681_10010990
165 Ga0207681_10011457
166 Ga0207664_10000004
167 Ga0207664_10000012
168 Ga0207664_10000498
169 Ga0207664_10000814
170 Ga0207664_10028036
171 Ga0207664_10034607
172 Ga0207664_10128661
173 Ga0207690_10000057
174 Ga0207690_10000093
175 Ga0207690_10000215
176 Ga0207690_10000292
177 Ga0207661_10263452
178 Ga0265326_10000032
179 Ga0265326_10000061
180 Ga0265326_10000094
181 Ga0265319_1002184
182 Ga0265319_1008174
183 Ga0265319_1008655
184 Ga0265334_10000002
185 Ga0265334_10000134
186 Ga0265334_10000153
187 Ga0265336_10002671
188 Ga0265336_10009341
189 Ga0265338_10007052
190 Ga0265338_10007206
191 Ga0265338_10009274
192 Ga0265338_10036829
193 Ga0265324_10001545
194 Ga0265324_10002961
195 Ga0265324_10003744
196 Ga0265340_10065805
197 Ga0265314_10149555
198 Ga0466966_0031748
199 Ga0495596_0045227
200 Ga0495596_0046007
201 Ga0495672_0118463
202 Ga0496101_0000575
203 Ga0496108_0276918
204 Ga0496112_0000659
205 Ga0496112_0107832
206 Ga0496113_0025456
207 nmdc:mga09592_12866_c1
208 nmdc:mga09592_9221_c1

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Structural Annotation

Top 5 Hits

ID Description Score Start End
1s7g-assembly1.cif.gz_A structural basis for the mechanism and regulation of sir2 enzymes 0.8444 45 82
1ma3-assembly1.cif.gz_A structure of a sir2 enzyme bound to an acetylated p53 peptide 0.7508 41 82
3mbo-assembly4.cif.gz_H crystal structure of the glycosyltransferase babsha bound with udp and l-malate 0.7393 1 330
6tpk-assembly1.cif.gz_A crystal structure of the human oxytocin receptor 0.7364 159 314
6tvp-assembly1.cif.gz_A structure of mycobacterium smegmatis alpha-maltose-1-phosphate synthase glgm 0.7363 1 330
ID Description Score Start End Superfamily
af_A0A1D6IU93_89_345_3.40.50.1220 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;TPP-binding domain 0.8538 45 80 3.40.50.1220
3okaA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.826 162 310 3.40.50.2000
af_Q2G1K0_190_352_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.8112 159 308 3.40.50.2000
af_Q8IE47_10_269_3.40.50.1220 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;TPP-binding domain 0.8059 45 82 3.40.50.1220
af_I1J850_294_457_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.8017 157 309 3.40.50.2000
ID Description Score Start End GO Terms
AF-A0A840IER2-F1-model_v4 Glycosyltransferase involved in cell wall biosynthesis 0.965 1 335 GO:0016740
AF-D3FFF9-F1-model_v4 Glycosyl transferase group 1 0.9646 1 333
AF-A0A840IGZ3-F1-model_v4 Glycosyltransferase 0.9594 1 334
AF-A0A840IER2-F1-model_v4 Glycosyltransferase involved in cell wall biosynthesis 0.9594 1 335 GO:0016740
AF-A0A840IGZ3-F1-model_v4 Glycosyltransferase 0.9538 1 334

Map