F132822

General Info

Members Datasets Scaffolds Average Seq Length
127 81 127 243

Family's Representative Sequence

Representative Sequence 3300005295|Ga0065707_10001373|Ga0065707_100013732
Length 271
Sequence VNPSLNDRSASAFGTTHWTQVLAARGESAEAKHALRDLCEAYYAPVEAFIGRYRAGRDDARDLTHQFFAKLLEGNSLKGVERTRGRFRSYLLGAVKHFLSDQADRTSAEKRGSGQTPQSLDASPSHDRSERQEHAPLDVADPHGFPPDAFFDRQWALAIVEKAMSILQAEAQDRGETQRFEVLRRWLIPSEDGAIAAEAARSLDMTEGAFKVAVHRLRQRFRQLVKDQIASSVDGPEALQGELDYLIQALTAAESSPDSSTCRHPPLDRTS

Samples

Sample ID Description Type Environment
1 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
2 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
3 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
4 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
5 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
6 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
7 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
8 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
9 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
10 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
11 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
12 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
13 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
14 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
15 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
16 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
17 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
18 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
19 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
20 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
21 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
22 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
23 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
24 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
25 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
26 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
27 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
33 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
34 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
35 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
36 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
37 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
38 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
39 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
40 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
41 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
42 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
43 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
44 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
45 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
46 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
47 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
48 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
49 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
50 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
51 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
52 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
53 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
54 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
55 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
56 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
57 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
58 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
59 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
60 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
61 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
62 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
63 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
64 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
65 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
66 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
67 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
68 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
69 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
70 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
71 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
72 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
73 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
74 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
75 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
76 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
77 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
78 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
79 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
80 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
81 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.09
Nodule 0
Rhizoplane 0
Rhizosphere 92.91
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0065707_10001373 3300005295 Bacteria 8520
2 Ga0070689_100004843 3300005340 Eukaryota 9134
3 Ga0070675_100381231 3300005354 Bacteria 1255
4 Ga0070667_100167379 3300005367 Unclassified 1939
5 Ga0070700_100240753 3300005441 Unclassified 1293
6 Ga0070681_10113558 3300005458 Unclassified 2648
7 Ga0070679_100109298 3300005530 Bacteria 2751
8 Ga0068853_100000142 3300005539 Bacteria 48829
9 Ga0068853_100000476 3300005539 Bacteria 27350
10 Ga0070686_100042582 3300005544 Unclassified 2845
11 Ga0070704_100017654 3300005549 Bacteria 4543
12 Ga0068863_100572900 3300005841 Bacteria 1116
13 Ga0068860_100472154 3300005843 Unclassified 1249
14 Ga0070717_10192538 3300006028 Unclassified 1782
15 Ga0075362_10002106 3300006177 Bacteria 6573
16 Ga0075366_10341516 3300006195 Bacteria 918
17 Ga0075428_100035000 3300006844 Bacteria 5537
18 Ga0075428_100079876 3300006844 Bacteria 3570
19 Ga0075430_100142744 3300006846 Unclassified 1994
20 Ga0075431_100008680 3300006847 Bacteria 10182
21 Ga0075431_100407500 3300006847 Bacteria 1360
22 Ga0075434_100321940 3300006871 Unclassified 1567
23 Ga0075429_100074520 3300006880 Bacteria 2956
24 Ga0075436_100353992 3300006914 Bacteria 1058
25 Ga0075436_100377711 3300006914 Bacteria 1024
26 Ga0105240_10000069 3300009093 Bacteria 205335
27 Ga0105240_10000260 3300009093 Bacteria 104648
28 Ga0105240_10001740 3300009093 Bacteria 36782
29 Ga0105240_10110550 3300009093 Bacteria 3326
30 Ga0111539_10047786 3300009094 Bacteria 5113
31 Ga0111539_10195638 3300009094 Unclassified 2358
32 Ga0111539_10202640 3300009094 Bacteria 2314
33 Ga0111539_11042997 3300009094 Unclassified 950
34 Ga0105238_10000455 3300009551 Bacteria 42985
35 Ga0105238_10135573 3300009551 Bacteria 2439
36 Ga0105239_10075970 3300010375 Bacteria 3694
37 Ga0157376_10273034 3300014969 Unclassified 1589
38 Ga0207695_10000186 3300025913 Bacteria 179847
39 Ga0207695_10000583 3300025913 Bacteria 74185
40 Ga0207695_10013995 3300025913 Bacteria 9527
41 Ga0207695_10125515 3300025913 Bacteria 2529
42 Ga0207670_10020935 3300025936 Bacteria 4026
43 Ga0207658_10392572 3300025986 Unclassified 1218
44 Ga0207639_10000010 3300026041 Bacteria 415264
45 Ga0207639_10000017 3300026041 Bacteria 256177
46 Ga0207702_10000452 3300026078 Bacteria 46403
47 Ga0265337_1005787 3300028556 Bacteria 4849
48 Ga0265319_1058656 3300028563 Bacteria 1253
49 Ga0265334_10001697 3300028573 Bacteria 10529
50 Ga0265334_10094369 3300028573 Unclassified 1089
51 Ga0265323_10000509 3300028653 Bacteria 21730
52 Ga0265323_10059291 3300028653 Unclassified 1335
53 Ga0265322_10024993 3300028654 Bacteria 1709
54 Ga0265338_10000029 3300028800 Bacteria 271824
55 Ga0265338_10045933 3300028800 Unclassified 4010
56 Ga0265338_10181204 3300028800 Bacteria 1606
57 Ga0265338_10358101 3300028800 Bacteria 1047
58 Ga0265324_10004026 3300029957 Bacteria 6765
59 Ga0265324_10098267 3300029957 Unclassified 995
60 Ga0265330_10090734 3300031235 Bacteria 1312
61 Ga0265320_10053180 3300031240 Unclassified 1958
62 Ga0265320_10080698 3300031240 Unclassified 1519
63 Ga0265320_10094107 3300031240 Bacteria 1385
64 Ga0265325_10010222 3300031241 Bacteria 5444
65 Ga0265340_10080565 3300031247 Unclassified 1533
66 Ga0265339_10001957 3300031249 Bacteria 15125
67 Ga0265331_10000014 3300031250 Bacteria 294002
68 Ga0265327_10003989 3300031251 Bacteria 13462
69 Ga0265316_10143183 3300031344 Bacteria 1794
70 Ga0265313_10000047 3300031595 Bacteria 113587
71 Ga0265314_10000100 3300031711 Bacteria 131357
72 Ga0265314_10009474 3300031711 Bacteria 8214
73 Ga0265342_10025481 3300031712 Bacteria 3716
74 Ga0265342_10322868 3300031712 Unclassified 809
75 Ga0373926_0038621 3300035083 Unclassified 1701
76 Ga0373954_0013412 3300035118 Bacteria 3652
77 Ga0373955_0102197 3300035172 Bacteria 1647
78 Ga0373924_0078224 3300035410 Unclassified 1404
79 Ga0373927_0002724 3300035695 Bacteria 12886
80 Ga0373947_0011147 3300035725 Bacteria 5162
81 Ga0373925_0027928 3300037068 Bacteria 4131
82 Ga0451577_0011831 3300042876 Bacteria 8232
83 Ga0451577_0126265 3300042876 Bacteria 2292
84 Ga0453684_0000389 3300044712 Bacteria 180487
85 Ga0453684_0000707 3300044712 Bacteria 118400
86 Ga0453684_0438470 3300044712 Bacteria 1456
87 Ga0451576_0012867 3300045051 Bacteria 9380
88 Ga0451576_0034981 3300045051 Bacteria 5332
89 Ga0451576_0063132 3300045051 Bacteria 3861
90 Ga0451576_0072488 3300045051 Bacteria 3584
91 Ga0451576_0083071 3300045051 Bacteria 3332
92 Ga0495651_0208429 3300046462 Unclassified 1362
93 Ga0495608_0335397 3300046511 Unclassified 932
94 Ga0495628_0082579 3300046516 Unclassified 2496
95 Ga0495628_0185868 3300046516 Bacteria 1570
96 Ga0495630_0009287 3300046517 Bacteria 7071
97 Ga0495630_0360891 3300046517 Unclassified 1112
98 Ga0495643_0000580 3300046522 Bacteria 44701
99 Ga0495586_0002167 3300046535 Bacteria 10680
100 Ga0495645_0183550 3300046543 Bacteria 1431
101 Ga0495645_0411907 3300046543 Unclassified 859
102 Ga0495634_0067446 3300046642 Bacteria 2367
103 Ga0495613_0182506 3300046689 Unclassified 1486
104 Ga0495613_0289934 3300046689 Unclassified 1135
105 Ga0495684_0108106 3300047471 Bacteria 2101
106 Ga0495684_0272833 3300047471 Bacteria 1223
107 Ga0495684_0387415 3300047471 Unclassified 984
108 Ga0501034_0742186 3300049571 Bacteria 878
109 Ga0501080_0040916 3300049742 Bacteria 4321
110 Ga0501080_0046899 3300049742 Unclassified 4022
111 Ga0501080_0063866 3300049742 Bacteria 3426
112 Ga0501080_0071356 3300049742 Bacteria 3230
113 Ga0501044_0993669 3300049823 Unclassified 711
114 nmdc:mga03683_27466_c1 3300050489 Unclassified 2254
115 nmdc:mga09592_72019_c1 3300050508 Bacteria 2934
116 nmdc:mga09592_729641_c1 3300050508 Unclassified 842
117 nmdc:mga06r32_101502_c1 3300050510 Bacteria 2824
118 nmdc:mga08y16_162212_c1 3300050511 Bacteria 2323
119 nmdc:mga08y16_247181_c1 3300050511 Bacteria 1843
120 nmdc:mga0n895_826824_c1 3300050512 Unclassified 915
121 nmdc:mga08x19_215023_c1 3300050514 Bacteria 1320
122 Ga0500643_046137 3300053087 Bacteria 1260
123 Ga0500559_0006407 3300053136 Bacteria 5318
124 Ga0500616_0004984 3300053153 Bacteria 9206
125 Ga0500616_0036362 3300053153 Bacteria 2672
126 Ga0500616_0128773 3300053153 Bacteria 1198
127 Ga0500616_0206212 3300053153 Bacteria 867

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046516 Ga0495628_0185868 Ga0495628_0185868_744_1370 208
2 3300046543 Ga0495645_0183550 Ga0495645_0183550_534_1160 208
3 3300005354 Ga0070675_100381231 Ga0070675_1003812312 214
4 3300005340 Ga0070689_100004843 Ga0070689_1000048434 217
5 3300050508 nmdc:mga09592_729641_c1 nmdc:mga09592_729641_c1_121_780 217
6 3300053153 Ga0500616_0128773 Ga0500616_0128773_363_1019 218
7 3300005539 Ga0068853_100000476 Ga0068853_1000004769 220
8 3300026041 Ga0207639_10000017 Ga0207639_1000001723 220
9 3300006846 Ga0075430_100142744 Ga0075430_1001427442 221
10 3300006847 Ga0075431_100008680 Ga0075431_1000086808 221
11 3300006880 Ga0075429_100074520 Ga0075429_1000745204 221
12 3300050508 nmdc:mga09592_72019_c1 nmdc:mga09592_72019_c1_1342_2007 221
13 3300050510 nmdc:mga06r32_101502_c1 nmdc:mga06r32_101502_c1_431_1096 221
14 3300028573 Ga0265334_10094369 Ga0265334_100943692 222
15 3300009551 Ga0105238_10135573 Ga0105238_101355732 223
16 3300046543 Ga0495645_0411907 Ga0495645_0411907_30_701 223
17 3300046689 Ga0495613_0289934 Ga0495613_0289934_195_866 223
18 3300031711 Ga0265314_10009474 Ga0265314_100094744 224
19 3300025913 Ga0207695_10125515 Ga0207695_101255152 226
20 3300049823 Ga0501044_0993669 Ga0501044_0993669_17_697 226
21 3300053087 Ga0500643_046137 Ga0500643_046137_497_1186 229
22 3300046511 Ga0495608_0335397 Ga0495608_0335397_167_910 230
23 3300047471 Ga0495684_0387415 Ga0495684_0387415_112_855 230
24 3300031251 Ga0265327_10003989 Ga0265327_1000398914 233
25 3300005539 Ga0068853_100000142 Ga0068853_1000001426 235
26 3300026041 Ga0207639_10000010 Ga0207639_10000010333 235
27 3300049742 Ga0501080_0046899 Ga0501080_0046899_1800_2507 235
28 3300053153 Ga0500616_0036362 Ga0500616_0036362_1632_2339 235
29 3300053153 Ga0500616_0206212 Ga0500616_0206212_98_805 235
30 3300005458 Ga0070681_10113558 Ga0070681_101135583 236
31 3300006177 Ga0075362_10002106 Ga0075362_100021066 236
32 3300050489 nmdc:mga03683_27466_c1 nmdc:mga03683_27466_c1_932_1642 236
33 3300046462 Ga0495651_0208429 Ga0495651_0208429_17_730 237
34 3300005367 Ga0070667_100167379 Ga0070667_1001673792 238
35 3300025986 Ga0207658_10392572 Ga0207658_103925722 238
36 3300049742 Ga0501080_0040916 Ga0501080_0040916_410_1126 238
37 3300053136 Ga0500559_0006407 Ga0500559_0006407_3067_3783 238
38 3300006844 Ga0075428_100035000 Ga0075428_1000350004 240
39 3300006844 Ga0075428_100079876 Ga0075428_1000798762 240
40 3300009093 Ga0105240_10000069 Ga0105240_1000006930 240
41 3300009094 Ga0111539_10202640 Ga0111539_102026402 240
42 3300025913 Ga0207695_10000186 Ga0207695_10000186105 240
43 3300049742 Ga0501080_0063866 Ga0501080_0063866_1408_2136 240
44 3300050511 nmdc:mga08y16_162212_c1 nmdc:mga08y16_162212_c1_314_1036 240
45 3300026078 Ga0207702_10000452 Ga0207702_1000045222 241
46 3300028556 Ga0265337_1005787 Ga0265337_10057872 241
47 3300028563 Ga0265319_1058656 Ga0265319_10586561 241
48 3300028573 Ga0265334_10001697 Ga0265334_100016978 241
49 3300028653 Ga0265323_10000509 Ga0265323_1000050916 241
50 3300028653 Ga0265323_10059291 Ga0265323_100592911 241
51 3300028654 Ga0265322_10024993 Ga0265322_100249932 241
52 3300028800 Ga0265338_10000029 Ga0265338_10000029108 241
53 3300028800 Ga0265338_10181204 Ga0265338_101812042 241
54 3300031235 Ga0265330_10090734 Ga0265330_100907342 241
55 3300031240 Ga0265320_10053180 Ga0265320_100531802 241
56 3300031240 Ga0265320_10094107 Ga0265320_100941072 241
57 3300031344 Ga0265316_10143183 Ga0265316_101431831 241
58 3300031712 Ga0265342_10322868 Ga0265342_103228681 241
59 3300035118 Ga0373954_0013412 Ga0373954_0013412_908_1660 241
60 3300035172 Ga0373955_0102197 Ga0373955_0102197_679_1431 241
61 3300042876 Ga0451577_0126265 Ga0451577_0126265_816_1577 241
62 3300044712 Ga0453684_0000707 Ga0453684_0000707_34483_35244 241
63 3300045051 Ga0451576_0083071 Ga0451576_0083071_1711_2454 241
64 3300049742 Ga0501080_0071356 Ga0501080_0071356_2428_3153 241
65 3300006871 Ga0075434_100321940 Ga0075434_1003219402 242
66 3300006914 Ga0075436_100377711 Ga0075436_1003777111 242
67 3300049571 Ga0501034_0742186 Ga0501034_0742186_17_745 242
68 3300050512 nmdc:mga0n895_826824_c1 nmdc:mga0n895_826824_c1_170_898 242
69 3300005841 Ga0068863_100572900 Ga0068863_1005729001 243
70 3300005441 Ga0070700_100240753 Ga0070700_1002407532 244
71 3300005544 Ga0070686_100042582 Ga0070686_1000425822 244
72 3300028800 Ga0265338_10045933 Ga0265338_100459332 244
73 3300029957 Ga0265324_10004026 Ga0265324_100040262 244
74 3300042876 Ga0451577_0011831 Ga0451577_0011831_4736_5476 244
75 3300044712 Ga0453684_0000389 Ga0453684_0000389_89895_90635 244
76 3300044712 Ga0453684_0438470 Ga0453684_0438470_213_947 244
77 3300045051 Ga0451576_0012867 Ga0451576_0012867_3544_4278 244
78 3300045051 Ga0451576_0034981 Ga0451576_0034981_781_1521 244
79 3300046516 Ga0495628_0082579 Ga0495628_0082579_167_904 244
80 3300046535 Ga0495586_0002167 Ga0495586_0002167_7111_7854 244
81 3300046642 Ga0495634_0067446 Ga0495634_0067446_1301_2044 244
82 3300005843 Ga0068860_100472154 Ga0068860_1004721542 245
83 3300006195 Ga0075366_10341516 Ga0075366_103415161 245
84 3300006847 Ga0075431_100407500 Ga0075431_1004075002 245
85 3300009093 Ga0105240_10000260 Ga0105240_1000026066 245
86 3300009094 Ga0111539_10195638 Ga0111539_101956382 245
87 3300009094 Ga0111539_11042997 Ga0111539_110429972 245
88 3300010375 Ga0105239_10075970 Ga0105239_100759702 245
89 3300025913 Ga0207695_10000583 Ga0207695_1000058343 245
90 3300025936 Ga0207670_10020935 Ga0207670_100209354 245
91 3300046517 Ga0495630_0360891 Ga0495630_0360891_18_773 245
92 3300046689 Ga0495613_0182506 Ga0495613_0182506_694_1449 245
93 3300047471 Ga0495684_0108106 Ga0495684_0108106_1270_2025 245
94 3300005530 Ga0070679_100109298 Ga0070679_1001092984 246
95 3300009093 Ga0105240_10001740 Ga0105240_1000174020 246
96 3300025913 Ga0207695_10013995 Ga0207695_100139955 246
97 3300035083 Ga0373926_0038621 Ga0373926_0038621_220_963 246
98 3300035410 Ga0373924_0078224 Ga0373924_0078224_295_1038 246
99 3300035695 Ga0373927_0002724 Ga0373927_0002724_2199_2942 246
100 3300035725 Ga0373947_0011147 Ga0373947_0011147_3931_4674 246
101 3300037068 Ga0373925_0027928 Ga0373925_0027928_116_859 246
102 3300045051 Ga0451576_0072488 Ga0451576_0072488_1286_2068 246
103 3300046517 Ga0495630_0009287 Ga0495630_0009287_4292_5035 246
104 3300006028 Ga0070717_10192538 Ga0070717_101925382 247
105 3300006914 Ga0075436_100353992 Ga0075436_1003539922 247
106 3300009093 Ga0105240_10110550 Ga0105240_101105502 247
107 3300014969 Ga0157376_10273034 Ga0157376_102730342 247
108 3300031240 Ga0265320_10080698 Ga0265320_100806982 247
109 3300045051 Ga0451576_0063132 Ga0451576_0063132_2757_3503 247
110 3300046522 Ga0495643_0000580 Ga0495643_0000580_38342_39085 247
111 3300047471 Ga0495684_0272833 Ga0495684_0272833_436_1185 247
112 3300050514 nmdc:mga08x19_215023_c1 nmdc:mga08x19_215023_c1_183_932 247
113 3300031247 Ga0265340_10080565 Ga0265340_100805652 248
114 3300053153 Ga0500616_0004984 Ga0500616_0004984_104_853 248
115 3300009551 Ga0105238_10000455 Ga0105238_1000045527 249
116 3300005549 Ga0070704_100017654 Ga0070704_1000176544 250
117 3300028800 Ga0265338_10358101 Ga0265338_103581011 256
118 3300029957 Ga0265324_10098267 Ga0265324_100982672 256
119 3300031241 Ga0265325_10010222 Ga0265325_100102223 256
120 3300031249 Ga0265339_10001957 Ga0265339_100019578 256
121 3300031250 Ga0265331_10000014 Ga0265331_10000014167 256
122 3300031595 Ga0265313_10000047 Ga0265313_1000004757 256
123 3300031711 Ga0265314_10000100 Ga0265314_1000010015 256
124 3300031712 Ga0265342_10025481 Ga0265342_100254812 256
125 3300009094 Ga0111539_10047786 Ga0111539_100477862 263
126 3300050511 nmdc:mga08y16_247181_c1 nmdc:mga08y16_247181_c1_520_1317 263
127 3300005295 Ga0065707_10001373 Ga0065707_100013732 271

Structural Annotation

Top 5 Hits

ID Description Score Start End
3cmy-assembly1.cif.gz_A-2 structure of a homeodomain in complex with dna 0.7628 178 223
5jlx-assembly1.cif.gz_A antphd with 15bp dna duplex s-monothioated at cytidine-8 0.7574 178 223
5zjq-assembly1.cif.gz_A structure of abdb/exd complex bound to a 'red14' dna sequence 0.7555 178 223
4xic-assembly2.cif.gz_D antphd with 15bp di-thioate modified dna duplex 0.7455 178 223
5h6x-assembly1.cif.gz_A the crystal structure of rpos fragment including a partial region 1.2 and region 2 from intracellular pathogen legionella pneumophila 0.6625 20 106
ID Description Score Start End Superfamily
5zjqB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.7763 178 223 1.10.10.60
3cmyA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.7628 178 223 1.10.10.60
4xicD00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.7455 178 223 1.10.10.60
4qtrD00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.7061 176 223 1.10.10.60
4xicD00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.6266 178 223 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A7X8ULY3-F1-model_v4 RNA polymerase sigma-70 region 4 domain-containing protein 0.941 145 250
AF-A0A7X8ULY3-F1-model_v4 RNA polymerase sigma-70 region 4 domain-containing protein 0.9325 145 250
AF-A0A2V6D277-F1-model_v4 RNA polymerase subunit sigma-24 0.9158 152 250
AF-A0A2V6CP41-F1-model_v4 RNA polymerase subunit sigma-24 0.9152 148 253
AF-A0A2V8MQ12-F1-model_v4 RNA polymerase subunit sigma-24 0.905 148 250

Feature Viewer

pLDDT pTM Quality
77.51 0.72 High
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Predicted Structure (AlphaFold2)

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