F145756

General Info

Members Datasets Scaffolds Average Seq Length
130 110 126 253

Family's Representative Sequence

Representative Sequence 3300025925|Ga0207650_10195648|Ga0207650_101956481
Length 270
Sequence MNLKIIFISFVFAILKQMYFIDTHTHIYLQEFDDDRDSIMQKAQEADVEITIMPAIDSTTHEKMFQVESSYGNCHSMIGLHPCSVDKGFEKELSLVNQFLVERKFVAVGEIGLDFYWDKTFVSEQYEAFHRQIQMAITYRLPIVIHSRNAIDECINVVNKYPGVKGVFHCFSGNEEQAKKIVDLDFMLGIGGVVTFKNAGLDKVIEQIGLSNVILETDAPYLAPVPYRGKRNEPAYIRLVAEKLSAVCNLPLEKIAELTTENARKLFKLQ

Samples

Sample ID Description Type Environment
1 2837678835 Jiella endophytica CBS5Q-3 Isolate Unclassified
2 2964375228 Anaerobacillus alkaliphilus B16-10 Isolate Rhizosphere
3 2977254563 Bacillus sp. SORGH_AS 510 Isolate Unclassified
4 3001892409 Neobacillus rhizophilus FJAT-49825 Isolate Rhizosphere
5 3300001915 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7 Metagenome Rhizosphere
6 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
7 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
8 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
9 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
10 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
11 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
12 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
13 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
14 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
15 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
16 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
17 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
18 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
19 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
20 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
21 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
22 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
23 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
24 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
25 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
26 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
27 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
28 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
29 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
30 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
32 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
33 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
34 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
35 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
36 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
37 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
38 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
39 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
40 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
41 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
48 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
49 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
50 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
51 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
52 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
53 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
54 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
55 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
56 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
57 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
58 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
59 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
60 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
61 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
62 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
63 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
64 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
65 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
66 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
67 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
68 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
69 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
70 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
71 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
72 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
73 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
74 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
75 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
76 3300049514 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - A25_B_5_drought Metagenome Rhizosphere
77 3300049515 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F22_B_5_drought Metagenome Rhizosphere
78 3300049521 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E25_B_7_drought Metagenome Rhizosphere
79 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
81 3300049649 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_A_0_drought Metagenome Rhizosphere
82 3300049651 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F3_A_0_drought Metagenome Rhizosphere
83 3300049652 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_A_0_drought Metagenome Rhizosphere
84 3300049653 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D2_A_0_control Metagenome Rhizosphere
85 3300049654 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_A_0_control Metagenome Rhizosphere
86 3300049655 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_B_0_drought Metagenome Rhizosphere
87 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
88 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
89 3300049664 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_A_2_drought Metagenome Rhizosphere
90 3300049668 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_B_2_drought Metagenome Rhizosphere
91 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
92 3300049672 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_A_3_drought Metagenome Rhizosphere
93 3300049675 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_A_3_control Metagenome Rhizosphere
94 3300049681 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_B_3_drought Metagenome Rhizosphere
95 3300049683 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_B_3_control Metagenome Rhizosphere
96 3300049688 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_A_4_drought Metagenome Rhizosphere
97 3300049690 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G13_A_4_drought Metagenome Rhizosphere
98 3300049704 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G2_A_2_control Metagenome Rhizosphere
99 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
100 3300049707 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_B_2_drought Metagenome Rhizosphere
101 3300049708 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D14_A_3_control Metagenome Rhizosphere
102 3300049761 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I14_A_4_control Metagenome Rhizosphere
103 3300049765 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F14_B_4_drought Metagenome Rhizosphere
104 3300049775 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F22_A_5_drought Metagenome Rhizosphere
105 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
106 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
107 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere
108 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
109 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
110 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.15
Metatranscriptomes 0.77
Isolates 3.08

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.85
Nodule 0
Rhizoplane 4.62
Rhizosphere 80
Stem 0
Stem Tuber 0
Unclassified 11.54

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24741J21665_1016939 3300001915 Unclassified 1183
2 rootH1_10001090 3300003316 Bacteria 40128
3 rootH1_10130999 3300003316 Unclassified 1581
4 rootH2_10000284 3300003320 Bacteria 7968
5 rootL2_10067021 3300003322 Bacteria 2171
6 rootL2_10258922 3300003322 Bacteria 4175
7 rootL2_10287087 3300003322 Unclassified 1429
8 rootH1_10000715 3300003323 Bacteria 71212
9 rootH1_10027281 3300003323 Bacteria 15833
10 rootH1_10043770 3300003323 Bacteria 5593
11 Ga0006562J51391_1000026 3300003578 Bacteria 55240
12 Ga0065704_10171306 3300005289 Bacteria 1276
13 Ga0065712_10012352 3300005290 Bacteria 1774
14 Ga0070670_100601882 3300005331 Bacteria 984
15 Ga0070675_100087749 3300005354 Bacteria 2601
16 Ga0070673_100015943 3300005364 Bacteria 5295
17 Ga0070688_100113987 3300005365 Bacteria 1802
18 Ga0070713_100385578 3300005436 Bacteria 1306
19 Ga0070684_100084098 3300005535 Bacteria 2820
20 Ga0068853_100891460 3300005539 Bacteria 854
21 Ga0070672_100043356 3300005543 Bacteria 3469
22 Ga0070672_100049297 3300005543 Bacteria 3275
23 Ga0070704_100550253 3300005549 Bacteria 1008
24 Ga0068855_100141181 3300005563 Bacteria 2746
25 Ga0070664_100355953 3300005564 Bacteria 1332
26 Ga0068856_100094732 3300005614 Bacteria 2973
27 Ga0068852_100052560 3300005616 Bacteria 3502
28 Ga0068851_10104874 3300005834 Bacteria 1503
29 Ga0068863_100046573 3300005841 Bacteria 4116
30 Ga0070716_100163987 3300006173 Bacteria 1443
31 Ga0075428_100017124 3300006844 Bacteria 8005
32 Ga0111539_10017503 3300009094 Bacteria 8873
33 Ga0111539_10062414 3300009094 Bacteria 4411
34 Ga0111539_10685030 3300009094 Viruses 1193
35 Ga0105237_10487697 3300009545 Bacteria 1239
36 Ga0157371_10002671 3300013102 Bacteria 16870
37 Ga0157371_10246131 3300013102 Bacteria 1287
38 Ga0157370_10168284 3300013104 Bacteria 2038
39 Ga0157369_10001051 3300013105 Bacteria 34842
40 Ga0157374_10329948 3300013296 Bacteria 1513
41 Ga0163162_10713214 3300013306 Bacteria 1124
42 Ga0157372_10000009 3300013307 Bacteria 302051
43 Ga0157372_10443271 3300013307 Bacteria 1513
44 Ga0157372_10801415 3300013307 Bacteria 1094
45 Ga0157380_10009014 3300014326 Bacteria 7126
46 Ga0157377_10004170 3300014745 Bacteria 6605
47 Ga0209257_1013079 3300025304 Bacteria 3740
48 Ga0207656_10241328 3300025321 Bacteria 883
49 Ga0207650_10195648 3300025925 Bacteria 1617
50 Ga0207650_10471891 3300025925 Bacteria 1046
51 Ga0207659_10092093 3300025926 Bacteria 2266
52 Ga0207691_10444309 3300025940 Bacteria 1104
53 Ga0207691_10621217 3300025940 Bacteria 914
54 Ga0207679_10356526 3300025945 Bacteria 1276
55 Ga0207702_10598066 3300026078 Bacteria 1082
56 Ga0207428_10152959 3300027907 Unclassified 1755
57 Ga0265327_10017884 3300031251 Bacteria 4421
58 Ga0307509_10007912 3300031507 Bacteria 13726
59 Ga0307405_10102586 3300031731 Bacteria 1922
60 Ga0307410_10004028 3300031852 Bacteria 7506
61 Ga0307410_10219060 3300031852 Bacteria 1463
62 Ga0307412_10032833 3300031911 Bacteria 3294
63 Ga0307409_100043332 3300031995 Bacteria 3378
64 Ga0307409_100393738 3300031995 Bacteria 1321
65 Ga0307416_100029876 3300032002 Bacteria 4080
66 Ga0307416_100571617 3300032002 Bacteria 1206
67 Ga0307415_100272333 3300032126 Bacteria 1388
68 Ga0316574_0004587 3300035398 Archaea 7259
69 Ga0395899_0000327 3300037312 Bacteria 60343
70 Ga0395905_0001296 3300037471 Bacteria 30740
71 Ga0395901_0050723 3300038443 Bacteria 4310
72 Ga0453683_0001221 3300044673 Bacteria 23047
73 Ga0466966_0011694 3300044684 Bacteria 5817
74 Ga0466959_0006644 3300045049 Bacteria 8036
75 Ga0451576_0004777 3300045051 Bacteria 17367
76 Ga0495638_0000006 3300046460 Bacteria 668846
77 Ga0495605_0235781 3300046474 Bacteria 787
78 Ga0495644_0077624 3300046523 Bacteria 1251
79 Ga0495642_0217724 3300046528 Bacteria 833
80 Ga0495622_0270864 3300046557 Bacteria 744
81 Ga0495625_0106017 3300046660 Bacteria 1925
82 Ga0496101_0524656 3300048904 Bacteria 936
83 Ga0496102_0701068 3300048905 Bacteria 935
84 Ga0496104_0104303 3300048907 Bacteria 2717
85 Ga0496112_0081696 3300048915 Bacteria 3196
86 Ga0496113_0076613 3300048916 Bacteria 2555
87 Ga0496113_0696572 3300048916 Bacteria 811
88 Ga0496125_0002022 3300048928 Bacteria 27473
89 Ga0496125_0103158 3300048928 Bacteria 2093
90 Ga0501291_004447 3300049514 Bacteria 1791
91 Ga0501292_003934 3300049515 Bacteria 2008
92 Ga0501298_006427 3300049521 Bacteria 1921
93 Ga0501034_0028533 3300049571 Bacteria 5680
94 Ga0501043_0068939 3300049579 Bacteria 2778
95 Ga0501198_000382 3300049649 Bacteria 5552
96 Ga0501201_000028 3300049651 Bacteria 9325
97 Ga0501202_002778 3300049652 Bacteria 2964
98 Ga0501206_001124 3300049653 Bacteria 3329
99 Ga0501207_000875 3300049654 Bacteria 3606
100 Ga0501208_017428 3300049655 Bacteria 1132
101 Ga0501217_003084 3300049661 Bacteria 3336
102 Ga0501223_002151 3300049663 Bacteria 4416
103 Ga0501224_001241 3300049664 Bacteria 3357
104 Ga0501233_000324 3300049668 Bacteria 7376
105 Ga0501235_002053 3300049669 Bacteria 4321
106 Ga0501239_013111 3300049672 Bacteria 945
107 Ga0501243_003819 3300049675 Bacteria 2248
108 Ga0501251_005611 3300049681 Bacteria 1337
109 Ga0501253_011076 3300049683 Bacteria 1376
110 Ga0501259_002017 3300049688 Bacteria 3351
111 Ga0501261_000246 3300049690 Bacteria 7454
112 Ga0501221_003082 3300049704 Bacteria 2743
113 Ga0501225_0004675 3300049705 Bacteria 4060
114 Ga0501234_007105 3300049707 Bacteria 1752
115 Ga0501245_000741 3300049708 Bacteria 4048
116 Ga0501264_004928 3300049761 Bacteria 1211
117 Ga0501268_030936 3300049765 Bacteria 968
118 Ga0501279_005842 3300049775 Bacteria 1619
119 nmdc:mga06r32_114062_c1 3300050510 Bacteria 2660
120 nmdc:mga08y16_22311_c1 3300050511 Bacteria 6680
121 nmdc:mga08y16_42394_c1 3300050511 Bacteria 4767
122 nmdc:mga08y16_637525_c1 3300050511 Viruses 1071
123 Ga0500628_017304 3300053129 Bacteria 1406
124 Ga0500588_0105751 3300053146 Bacteria 976
125 Ga0500604_0003996 3300053151 Bacteria 3938
126 Ga0500616_0000044 3300053153 Bacteria 339611

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048905 Ga0496102_0701068 Ga0496102_0701068_21_584 184
2 3300046474 Ga0495605_0235781 Ga0495605_0235781_89_760 221
3 3300046557 Ga0495622_0270864 Ga0495622_0270864_35_706 221
4 3300048916 Ga0496113_0696572 Ga0496113_0696572_82_753 221
5 3300005290 Ga0065712_10012352 Ga0065712_100123522 230
6 3300005331 Ga0070670_100601882 Ga0070670_1006018821 230
7 3300005354 Ga0070675_100087749 Ga0070675_1000877492 230
8 3300005364 Ga0070673_100015943 Ga0070673_1000159432 230
9 3300005365 Ga0070688_100113987 Ga0070688_1001139872 230
10 3300005539 Ga0068853_100891460 Ga0068853_1008914601 230
11 3300005543 Ga0070672_100043356 Ga0070672_1000433563 230
12 3300005543 Ga0070672_100049297 Ga0070672_1000492973 230
13 3300005564 Ga0070664_100355953 Ga0070664_1003559532 230
14 3300005616 Ga0068852_100052560 Ga0068852_1000525602 230
15 3300005834 Ga0068851_10104874 Ga0068851_101048743 230
16 3300009545 Ga0105237_10487697 Ga0105237_104876972 230
17 3300013102 Ga0157371_10246131 Ga0157371_102461311 230
18 3300013296 Ga0157374_10329948 Ga0157374_103299482 230
19 3300013306 Ga0163162_10713214 Ga0163162_107132142 230
20 3300013307 Ga0157372_10443271 Ga0157372_104432713 230
21 3300013307 Ga0157372_10801415 Ga0157372_108014152 230
22 3300014745 Ga0157377_10004170 Ga0157377_100041702 230
23 3300025321 Ga0207656_10241328 Ga0207656_102413281 230
24 3300025925 Ga0207650_10195648 Ga0207650_101956481 230
25 3300025925 Ga0207650_10471891 Ga0207650_104718911 230
26 3300025926 Ga0207659_10092093 Ga0207659_100920932 230
27 3300025940 Ga0207691_10444309 Ga0207691_104443091 230
28 3300025940 Ga0207691_10621217 Ga0207691_106212171 230
29 3300025945 Ga0207679_10356526 Ga0207679_103565262 230
30 3300049514 Ga0501291_004447 Ga0501291_004447_374_1129 230
31 3300049515 Ga0501292_003934 Ga0501292_003934_1119_1874 230
32 3300049521 Ga0501298_006427 Ga0501298_006427_831_1586 230
33 3300049579 Ga0501043_0068939 Ga0501043_0068939_1915_2676 230
34 3300049649 Ga0501198_000382 Ga0501198_000382_1440_2195 230
35 3300049651 Ga0501201_000028 Ga0501201_000028_4646_5401 230
36 3300049652 Ga0501202_002778 Ga0501202_002778_1740_2495 230
37 3300049653 Ga0501206_001124 Ga0501206_001124_2550_3305 230
38 3300049654 Ga0501207_000875 Ga0501207_000875_1239_1994 230
39 3300049655 Ga0501208_017428 Ga0501208_017428_322_1077 230
40 3300049661 Ga0501217_003084 Ga0501217_003084_699_1454 230
41 3300049663 Ga0501223_002151 Ga0501223_002151_581_1336 230
42 3300049664 Ga0501224_001241 Ga0501224_001241_655_1410 230
43 3300049668 Ga0501233_000324 Ga0501233_000324_4446_5201 230
44 3300049669 Ga0501235_002053 Ga0501235_002053_2953_3708 230
45 3300049672 Ga0501239_013111 Ga0501239_013111_102_857 230
46 3300049675 Ga0501243_003819 Ga0501243_003819_641_1396 230
47 3300049681 Ga0501251_005611 Ga0501251_005611_610_1323 230
48 3300049683 Ga0501253_011076 Ga0501253_011076_382_1137 230
49 3300049688 Ga0501259_002017 Ga0501259_002017_1569_2324 230
50 3300049690 Ga0501261_000246 Ga0501261_000246_5210_5965 230
51 3300049704 Ga0501221_003082 Ga0501221_003082_1692_2447 230
52 3300049705 Ga0501225_0004675 Ga0501225_0004675_91_846 230
53 3300049707 Ga0501234_007105 Ga0501234_007105_978_1733 230
54 3300049708 Ga0501245_000741 Ga0501245_000741_1304_2059 230
55 3300049761 Ga0501264_004928 Ga0501264_004928_288_1043 230
56 3300049765 Ga0501268_030936 Ga0501268_030936_84_839 230
57 3300049775 Ga0501279_005842 Ga0501279_005842_699_1454 230
58 3300005436 Ga0070713_100385578 Ga0070713_1003855782 231
59 3300048928 Ga0496125_0002022 Ga0496125_0002022_3006_3767 231
60 3300048928 Ga0496125_0103158 Ga0496125_0103158_818_1582 231
61 3300003316 rootH1_10130999 rootH1_101309992 232
62 3300003322 rootL2_10258922 rootL2_102589223 232
63 3300003322 rootL2_10287087 rootL2_102870872 232
64 3300003578 Ga0006562J51391_1000026 Ga0006562J51391_100002616 232
65 3300031251 Ga0265327_10017884 Ga0265327_100178846 232
66 3300031731 Ga0307405_10102586 Ga0307405_101025862 232
67 3300031852 Ga0307410_10004028 Ga0307410_100040289 232
68 3300031852 Ga0307410_10219060 Ga0307410_102190601 232
69 3300031911 Ga0307412_10032833 Ga0307412_100328332 232
70 3300031995 Ga0307409_100043332 Ga0307409_1000433322 232
71 3300031995 Ga0307409_100393738 Ga0307409_1003937382 232
72 3300032002 Ga0307416_100029876 Ga0307416_1000298762 232
73 3300032002 Ga0307416_100571617 Ga0307416_1005716173 232
74 3300032126 Ga0307415_100272333 Ga0307415_1002723332 232
75 3300035398 Ga0316574_0004587 Ga0316574_0004587_2299_3087 232
76 3300037471 Ga0395905_0001296 Ga0395905_0001296_1586_2350 232
77 3300038443 Ga0395901_0050723 Ga0395901_0050723_1219_1986 232
78 3300044673 Ga0453683_0001221 Ga0453683_0001221_7015_7806 232
79 3300045051 Ga0451576_0004777 Ga0451576_0004777_10198_10965 232
80 3300048904 Ga0496101_0524656 Ga0496101_0524656_80_850 232
81 3300048907 Ga0496104_0104303 Ga0496104_0104303_977_1744 232
82 3300048915 Ga0496112_0081696 Ga0496112_0081696_2007_2804 232
83 3300048916 Ga0496113_0076613 Ga0496113_0076613_338_1129 232
84 3300049571 Ga0501034_0028533 Ga0501034_0028533_3291_4070 232
85 3300050510 nmdc:mga06r32_114062_c1 nmdc:mga06r32_114062_c1_1784_2554 232
86 iso_pu_bacteria 2837678835 2837679979 232
87 iso_pu_bacteria 2964375228 2964376595 232
88 iso_pu_bacteria 2977254563 2977254792 232
89 iso_pu_bacteria 3001892409 3001894120 232
90 3300001915 JGI24741J21665_1016939 JGI24741J21665_10169392 233
91 3300003316 rootH1_10001090 rootH1_1000109021 233
92 3300003320 rootH2_10000284 rootH2_100002847 233
93 3300003322 rootL2_10067021 rootL2_100670211 233
94 3300003323 rootH1_10000715 rootH1_1000071517 233
95 3300003323 rootH1_10027281 rootH1_100272815 233
96 3300003323 rootH1_10043770 rootH1_100437705 233
97 3300005289 Ga0065704_10171306 Ga0065704_101713062 233
98 3300005535 Ga0070684_100084098 Ga0070684_1000840983 233
99 3300005549 Ga0070704_100550253 Ga0070704_1005502531 233
100 3300005563 Ga0068855_100141181 Ga0068855_1001411812 233
101 3300005614 Ga0068856_100094732 Ga0068856_1000947322 233
102 3300005841 Ga0068863_100046573 Ga0068863_1000465732 233
103 3300006173 Ga0070716_100163987 Ga0070716_1001639872 233
104 3300006844 Ga0075428_100017124 Ga0075428_1000171248 233
105 3300009094 Ga0111539_10017503 Ga0111539_100175036 233
106 3300009094 Ga0111539_10062414 Ga0111539_100624145 233
107 3300009094 Ga0111539_10685030 Ga0111539_106850302 233
108 3300013102 Ga0157371_10002671 Ga0157371_1000267112 233
109 3300013104 Ga0157370_10168284 Ga0157370_101682842 233
110 3300013105 Ga0157369_10001051 Ga0157369_1000105126 233
111 3300013307 Ga0157372_10000009 Ga0157372_1000000917 233
112 3300014326 Ga0157380_10009014 Ga0157380_100090143 233
113 3300025304 Ga0209257_1013079 Ga0209257_10130791 233
114 3300026078 Ga0207702_10598066 Ga0207702_105980662 233
115 3300027907 Ga0207428_10152959 Ga0207428_101529592 233
116 3300031507 Ga0307509_10007912 Ga0307509_1000791213 233
117 3300037312 Ga0395899_0000327 Ga0395899_0000327_27026_27793 233
118 3300044684 Ga0466966_0011694 Ga0466966_0011694_36_740 233
119 3300045049 Ga0466959_0006644 Ga0466959_0006644_3634_4401 233
120 3300046460 Ga0495638_0000006 Ga0495638_0000006_250232_251008 233
121 3300046523 Ga0495644_0077624 Ga0495644_0077624_245_946 233
122 3300046528 Ga0495642_0217724 Ga0495642_0217724_34_801 233
123 3300046660 Ga0495625_0106017 Ga0495625_0106017_695_1474 233
124 3300050511 nmdc:mga08y16_22311_c1 nmdc:mga08y16_22311_c1_4682_5452 233
125 3300050511 nmdc:mga08y16_42394_c1 nmdc:mga08y16_42394_c1_805_1581 233
126 3300050511 nmdc:mga08y16_637525_c1 nmdc:mga08y16_637525_c1_93_869 233
127 3300053129 Ga0500628_017304 Ga0500628_017304_311_1090 233
128 3300053146 Ga0500588_0105751 Ga0500588_0105751_14_790 233
129 3300053151 Ga0500604_0003996 Ga0500604_0003996_1546_2319 233
130 3300053153 Ga0500616_0000044 Ga0500616_0000044_3707_4483 233

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01026

TatD_DNase

TatD related DNase

21

268

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
2gzx-assembly2.cif.gz_B crystal structure of the tatd deoxyribonuclease mw0446 from staphylococcus aureus. northeast structural genomics consortium target zr237. 0.945 2 231
1yix-assembly2.cif.gz_B crystal structure of ycfh, tatd homolog from escherichia coli k12, at 1.9 a resolution 0.9367 2 232
1zzm-assembly1.cif.gz_A crystal structure of yjjv, tatd homolog from escherichia coli k12, at 1.8 a resolution 0.9298 2 233
2gzx-assembly2.cif.gz_B crystal structure of the tatd deoxyribonuclease mw0446 from staphylococcus aureus. northeast structural genomics consortium target zr237. 0.9294 2 231
1j6o-assembly1.cif.gz_A crystal structure of tatd-related deoxyribonuclease (tm0667) from thermotoga maritima at 1.8 a resolution 0.9261 2 231
ID Description Score Start End Superfamily
2gzxB00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.9389 2 231 3.20.20.140
af_P0AFQ7_2_265_3.20.20.140 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.9375 2 232 3.20.20.140
af_P39408_1_259_3.20.20.140 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.9338 2 232 3.20.20.140
1j6oA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.9261 2 231 3.20.20.140
af_P39408_1_259_3.20.20.140 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.9223 2 232 3.20.20.140
ID Description Score Start End GO Terms
AF-A0A4U1C0V1-F1-model_v4 TatD family deoxyribonuclease 0.9875 2 233 GO:0004536
GO:0005829
GO:0046872
AF-A0A4V1KHP6-F1-model_v4 TatD family deoxyribonuclease 0.9858 2 233 GO:0004536
GO:0005829
GO:0046872
AF-A0A4Q3T487-F1-model_v4 deleted 0.9853 1 125
AF-A0A7Y0NRB4-F1-model_v4 TatD DNase family protein (EC 3.1.21.-) 0.9852 1 233 GO:0004536
GO:0005829
GO:0046872
AF-A0A437ML21-F1-model_v4 TatD family deoxyribonuclease 0.9849 2 233 GO:0004536
GO:0005829
GO:0046872

Feature Viewer

pLDDT pTM Quality
95.48 0.91 High
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Predicted Structure (AlphaFold2)

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