F147072

General Info

Members Datasets Scaffolds Average Seq Length
130 110 121 335

Family's Representative Sequence

Representative Sequence 3300049586|Ga0501070_0008476|Ga0501070_0008476_6415_7614
Length 399
Sequence VVAVANGALANLDQQRRRKRIGAPREPGATGGWRNLRNAPIFNAEDTFGQRVFANAVRRISDKEKSMPGKKKAHAATRSTAGAVRKQREIQHRMDRRDEEKGSNSAKKKPAVQAGARKQPVDLPAQHLVKPGREHQLEEAPRYLAPDYRGSGKLEGRVALITGGDSGIGRAVAVLFAREGADVAIVYLSEDEDARETADAVENEGRSCLLIPGDVKDPDFCAEAVDRTIEEFGHLDILVNNAAFQEHSERLEDISEEHLQETLQTNIGGYFHMARAAVPHMQEGSAIINTGSETGLFGNPMLLDYSATKGAIHAFTRSLAKNLKDRGIRVNAVAPGPVWTPLNPADRPAKKMAKFGKDSAMGRAAQPEELSPAYVFLAAPVCSSYVSGSVLEVLGGPTG

Samples

Sample ID Description Type Environment
1 2738543013 Variovorax sp. BT01 Isolate Unclassified
2 2842733646 Variovorax sp. R-72446 Isolate Unclassified
3 2852684882 Xanthomonas sp. JAI131 Isolate Rhizosphere
4 2932422444 Comamonas sp. 4034 Isolate Rhizosphere
5 2939631187 Ottowia thiooxydans 2709 Isolate Rhizosphere
6 2941489479 Lysobacter enzymogenes 2943 Isolate Rhizosphere
7 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
8 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
9 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
10 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
11 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
12 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
13 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
14 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
15 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
16 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
17 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
18 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
19 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
20 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
21 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
22 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
23 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
24 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
25 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
26 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
27 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
28 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
29 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
30 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
31 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
32 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
33 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
34 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
35 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
36 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
37 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
38 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300027682 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) Metagenome Rhizosphere
51 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
52 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
54 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
55 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
56 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
57 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
58 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
59 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
60 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
61 3300038705 Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Metagenome Unclassified
62 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
63 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
64 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
65 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
66 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
67 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
68 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
69 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
70 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
71 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
72 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
73 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
74 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
75 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
76 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
77 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
78 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
79 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
80 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
81 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
82 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
83 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
84 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
85 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
86 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
87 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
89 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
93 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
94 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
95 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
96 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
97 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
100 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
101 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
102 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
103 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
104 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
105 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
106 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
107 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
108 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
109 8021622325 Xanthomonas sp. LMG12462 Isolate Rhizosphere
110 8021626552 Xanthomonas sp. LMG12460 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 93.08
Metatranscriptomes 0
Isolates 6.92

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10
Nodule 0
Rhizoplane 2.31
Rhizosphere 79.23
Stem 0
Stem Tuber 0
Unclassified 8.46

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10000165 3300003187 Bacteria 85521
2 Ga0065165_1006966 3300005262 Bacteria 5725
3 Ga0065715_10005364 3300005293 Bacteria 5007
4 Ga0070670_100003174 3300005331 Bacteria 13579
5 Ga0068868_100117823 3300005338 Bacteria 2164
6 Ga0070669_100011919 3300005353 Bacteria 6169
7 Ga0070671_100214358 3300005355 Bacteria 1633
8 Ga0068853_100028849 3300005539 Bacteria 4671
9 Ga0070672_100024442 3300005543 Bacteria 4466
10 Ga0070686_100096304 3300005544 Bacteria 1990
11 Ga0070664_100132652 3300005564 Bacteria 2189
12 Ga0068864_100062471 3300005618 Bacteria 3227
13 Ga0068863_100038904 3300005841 Bacteria 4526
14 Ga0068860_100086400 3300005843 Bacteria 2985
15 Ga0097621_100020792 3300006237 Bacteria 5065
16 Ga0097621_100203093 3300006237 Bacteria 1721
17 Ga0068871_100011295 3300006358 Bacteria 6549
18 Ga0075429_100243801 3300006880 Bacteria 1574
19 Ga0068865_100117866 3300006881 Bacteria 1969
20 Ga0105240_10077107 3300009093 Bacteria 4107
21 Ga0105248_10123508 3300009177 Bacteria 2920
22 Ga0105248_10355551 3300009177 Bacteria 1649
23 Ga0105238_10016796 3300009551 Bacteria 7419
24 Ga0105238_10068664 3300009551 Bacteria 3545
25 Ga0157378_10023719 3300013297 Bacteria 5398
26 Ga0163162_10003683 3300013306 Bacteria 14694
27 Ga0157372_10004617 3300013307 Bacteria 14645
28 Ga0163163_10026851 3300014325 Bacteria 5508
29 Ga0157379_10225057 3300014968 Bacteria 1700
30 Ga0157376_10004213 3300014969 Bacteria 9980
31 Ga0157376_10021573 3300014969 Bacteria 5005
32 Ga0209676_1001748 3300025292 Bacteria 18540
33 Ga0209676_1003590 3300025292 Bacteria 9356
34 Ga0209025_1000102 3300025294 Bacteria 228393
35 Ga0209025_1001485 3300025294 Bacteria 30443
36 Ga0209564_1006958 3300025295 Bacteria 5940
37 Ga0209758_1016657 3300025297 Bacteria 3717
38 Ga0207681_10005633 3300025923 Bacteria 7687
39 Ga0207694_10016195 3300025924 Bacteria 5627
40 Ga0207694_10041920 3300025924 Bacteria 3529
41 Ga0207650_10003297 3300025925 Bacteria 11111
42 Ga0207644_10032002 3300025931 Bacteria 3668
43 Ga0207691_10002253 3300025940 Bacteria 18914
44 Ga0207691_10007392 3300025940 Bacteria 10584
45 Ga0207679_10342065 3300025945 Bacteria 1301
46 Ga0207667_10161329 3300025949 Bacteria 2306
47 Ga0207668_10027546 3300025972 Bacteria 3702
48 Ga0207639_10188239 3300026041 Bacteria 1761
49 Ga0207702_10025894 3300026078 Bacteria 4869
50 Ga0207641_10082163 3300026088 Bacteria 2799
51 Ga0207676_10009637 3300026095 Bacteria 6873
52 Ga0209971_1000799 3300027682 Bacteria 8108
53 Ga0209974_10010510 3300027876 Bacteria 3124
54 Ga0268264_10054430 3300028381 Bacteria 3341
55 Ga0307516_10126918 3300031730 Bacteria 2335
56 Ga0307413_10007844 3300031824 Bacteria 4994
57 Ga0307409_100068667 3300031995 Bacteria 2804
58 Ga0307414_10108617 3300032004 Bacteria 2105
59 Ga0307411_10007806 3300032005 Bacteria 5491
60 Ga0395900_0013291 3300037418 Bacteria 8416
61 Ga0395905_0001361 3300037471 Bacteria 29758
62 Ga0395901_0012142 3300038443 Bacteria 8739
63 Ga0395901_0042709 3300038443 Bacteria 4701
64 Ga0237819_00187 3300038705 Bacteria 22791
65 Ga0439465_0000024 3300041413 Bacteria 30600
66 Ga0451807_0153884 3300041486 Bacteria 1480
67 Ga0439449_0000014 3300042007 Bacteria 50794
68 Ga0466965_0015249 3300044683 Bacteria 3651
69 Ga0453684_0107039 3300044712 Bacteria 3406
70 Ga0466959_0240116 3300045049 Bacteria 1252
71 Ga0495643_0033438 3300046522 Bacteria 2845
72 Ga0495663_0005258 3300046525 Bacteria 3602
73 Ga0495642_0006082 3300046528 Bacteria 4635
74 Ga0495621_0000810 3300046539 Bacteria 7910
75 Ga0495597_0021965 3300046542 Bacteria 2963
76 Ga0495656_0003388 3300046615 Bacteria 5389
77 Ga0495661_0003654 3300046665 Bacteria 11307
78 Ga0495636_0041590 3300047318 Bacteria 1908
79 Ga0495687_005064 3300047443 Bacteria 8564
80 Ga0495686_0004896 3300047472 Bacteria 10800
81 Ga0496106_0352730 3300048909 Bacteria 1182
82 Ga0496109_0113829 3300048912 Bacteria 2517
83 Ga0496116_0114770 3300048919 Bacteria 1573
84 Ga0496121_0009710 3300048924 Bacteria 11017
85 Ga0496121_0079924 3300048924 Bacteria 2594
86 Ga0496122_0001818 3300048925 Bacteria 32577
87 Ga0496123_0000264 3300048926 Bacteria 105015
88 Ga0496124_0000458 3300048927 Bacteria 70719
89 Ga0496125_0022777 3300048928 Bacteria 5807
90 Ga0501033_0004682 3300049570 Bacteria 10947
91 Ga0501033_0104808 3300049570 Bacteria 2061
92 Ga0501034_0167522 3300049571 Bacteria 2165
93 Ga0501036_0049862 3300049572 Bacteria 3546
94 Ga0501038_0024586 3300049574 Bacteria 5372
95 Ga0501043_0020220 3300049579 Bacteria 5227
96 Ga0501043_0024723 3300049579 Bacteria 4710
97 Ga0501043_0031313 3300049579 Bacteria 4182
98 Ga0501047_0016553 3300049581 Bacteria 7039
99 Ga0501047_0018760 3300049581 Bacteria 6634
100 Ga0501069_0131778 3300049585 Bacteria 1432
101 Ga0501070_0008476 3300049586 Bacteria 8686
102 Ga0501070_0285861 3300049586 Bacteria 1345
103 Ga0501073_0136661 3300049589 Bacteria 1699
104 Ga0501076_0133391 3300049592 Bacteria 2015
105 Ga0501080_0018282 3300049742 Bacteria 6487
106 Ga0501080_0385646 3300049742 Bacteria 1262
107 Ga0501035_0004818 3300049822 Bacteria 12791
108 Ga0501035_0023840 3300049822 Bacteria 5614
109 Ga0501044_0000953 3300049823 Bacteria 34724
110 Ga0501044_0068511 3300049823 Bacteria 3614
111 Ga0501045_0063621 3300049824 Bacteria 2708
112 Ga0501045_0111796 3300049824 Bacteria 2026
113 nmdc:mga09592_364859_c1 3300050508 Bacteria 1249
114 nmdc:mga0qj67_102714_c1 3300050509 Bacteria 2305
115 Ga0500610_0000259 3300053079 Bacteria 15982
116 Ga0500644_0022374 3300053088 Bacteria 1905
117 Ga0500651_0000563 3300053093 Bacteria 18874
118 Ga0500590_005056 3300053148 Bacteria 6315
119 Ga0500616_0011421 3300053153 Bacteria 5245
120 Ga0501084_0430187 3300054114 Bacteria 1116
121 Ga0530510_0322545 3300061734 Bacteria 1158

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300037418 Ga0395900_0013291 Ga0395900_0013291_3600_4700 301
2 3300037471 Ga0395905_0001361 Ga0395905_0001361_7334_8434 301
3 3300038443 Ga0395901_0042709 Ga0395901_0042709_3387_4487 301
4 3300049585 Ga0501069_0131778 Ga0501069_0131778_211_1236 305
5 3300031824 Ga0307413_10007844 Ga0307413_100078445 306
6 3300031995 Ga0307409_100068667 Ga0307409_1000686673 306
7 3300032005 Ga0307411_10007806 Ga0307411_100078063 306
8 3300053079 Ga0500610_0000259 Ga0500610_0000259_10625_11695 306
9 3300032004 Ga0307414_10108617 Ga0307414_101086173 309
10 3300038443 Ga0395901_0012142 Ga0395901_0012142_7589_8698 310
11 3300014969 Ga0157376_10004213 Ga0157376_100042132 311
12 3300041413 Ga0439465_0000024 Ga0439465_0000024_15853_16881 313
13 3300042007 Ga0439449_0000014 Ga0439449_0000014_14270_15298 313
14 3300049824 Ga0501045_0111796 Ga0501045_0111796_829_1992 314
15 3300025294 Ga0209025_1001485 Ga0209025_100148527 317
16 3300006880 Ga0075429_100243801 Ga0075429_1002438012 318
17 3300013307 Ga0157372_10004617 Ga0157372_100046171 318
18 3300050508 nmdc:mga09592_364859_c1 nmdc:mga09592_364859_c1_52_1062 318
19 3300050509 nmdc:mga0qj67_102714_c1 nmdc:mga0qj67_102714_c1_357_1367 318
20 3300053148 Ga0500590_005056 Ga0500590_005056_5132_6130 319
21 3300046615 Ga0495656_0003388 Ga0495656_0003388_394_1416 320
22 3300049570 Ga0501033_0104808 Ga0501033_0104808_532_1503 320
23 3300049572 Ga0501036_0049862 Ga0501036_0049862_558_1529 320
24 3300049574 Ga0501038_0024586 Ga0501038_0024586_2259_3230 320
25 3300049579 Ga0501043_0020220 Ga0501043_0020220_1124_2095 320
26 3300049581 Ga0501047_0018760 Ga0501047_0018760_559_1530 320
27 3300049822 Ga0501035_0023840 Ga0501035_0023840_2171_3142 320
28 3300049823 Ga0501044_0068511 Ga0501044_0068511_502_1473 320
29 3300005355 Ga0070671_100214358 Ga0070671_1002143581 321
30 3300009551 Ga0105238_10068664 Ga0105238_100686642 321
31 3300025924 Ga0207694_10041920 Ga0207694_100419204 321
32 3300025931 Ga0207644_10032002 Ga0207644_100320023 321
33 3300048912 Ga0496109_0113829 Ga0496109_0113829_106_1293 321
34 3300005564 Ga0070664_100132652 Ga0070664_1001326523 322
35 3300009093 Ga0105240_10077107 Ga0105240_100771074 322
36 3300009177 Ga0105248_10123508 Ga0105248_101235082 322
37 3300025945 Ga0207679_10342065 Ga0207679_103420651 322
38 3300026078 Ga0207702_10025894 Ga0207702_100258943 322
39 3300049742 Ga0501080_0018282 Ga0501080_0018282_3330_4382 322
40 3300005293 Ga0065715_10005364 Ga0065715_100053643 323
41 3300005353 Ga0070669_100011919 Ga0070669_1000119193 323
42 3300025923 Ga0207681_10005633 Ga0207681_100056335 323
43 3300031730 Ga0307516_10126918 Ga0307516_101269184 323
44 3300041486 Ga0451807_0153884 Ga0451807_0153884_165_1163 323
45 3300048919 Ga0496116_0114770 Ga0496116_0114770_202_1197 323
46 3300048925 Ga0496122_0001818 Ga0496122_0001818_10468_11463 323
47 3300048926 Ga0496123_0000264 Ga0496123_0000264_82888_83883 323
48 3300049592 Ga0501076_0133391 Ga0501076_0133391_692_1687 323
49 3300049824 Ga0501045_0063621 Ga0501045_0063621_1703_2698 323
50 3300053153 Ga0500616_0011421 Ga0500616_0011421_3728_4705 323
51 3300054114 Ga0501084_0430187 Ga0501084_0430187_89_1084 323
52 3300061734 Ga0530510_0322545 Ga0530510_0322545_51_1046 323
53 iso_pu_bacteria 2842733646 2842737880 323
54 iso_pu_bacteria 2852684882 2852689552 323
55 3300005539 Ga0068853_100028849 Ga0068853_1000288493 324
56 3300005544 Ga0070686_100096304 Ga0070686_1000963042 324
57 3300005841 Ga0068863_100038904 Ga0068863_1000389043 324
58 3300005843 Ga0068860_100086400 Ga0068860_1000864003 324
59 3300006237 Ga0097621_100020792 Ga0097621_1000207925 324
60 3300009551 Ga0105238_10016796 Ga0105238_100167968 324
61 3300013297 Ga0157378_10023719 Ga0157378_100237195 324
62 3300025924 Ga0207694_10016195 Ga0207694_100161951 324
63 3300025972 Ga0207668_10027546 Ga0207668_100275464 324
64 3300026088 Ga0207641_10082163 Ga0207641_100821631 324
65 3300028381 Ga0268264_10054430 Ga0268264_100544302 324
66 3300038705 Ga0237819_00187 Ga0237819_00187_7556_8614 324
67 3300045049 Ga0466959_0240116 Ga0466959_0240116_157_1164 324
68 3300047443 Ga0495687_005064 Ga0495687_005064_5679_6674 324
69 3300048924 Ga0496121_0009710 Ga0496121_0009710_4217_5215 324
70 3300048927 Ga0496124_0000458 Ga0496124_0000458_6364_7362 324
71 3300048928 Ga0496125_0022777 Ga0496125_0022777_3584_4582 324
72 3300049586 Ga0501070_0008476 Ga0501070_0008476_6415_7614 324
73 3300049586 Ga0501070_0285861 Ga0501070_0285861_215_1333 324
74 3300049742 Ga0501080_0385646 Ga0501080_0385646_12_1013 324
75 3300053093 Ga0500651_0000563 Ga0500651_0000563_15377_16564 324
76 iso_pu_bacteria 8021622325 8021625083 324
77 3300005331 Ga0070670_100003174 Ga0070670_10000317413 325
78 3300005338 Ga0068868_100117823 Ga0068868_1001178232 325
79 3300005543 Ga0070672_100024442 Ga0070672_1000244422 325
80 3300005618 Ga0068864_100062471 Ga0068864_1000624712 325
81 3300006237 Ga0097621_100203093 Ga0097621_1002030932 325
82 3300006358 Ga0068871_100011295 Ga0068871_1000112955 325
83 3300006881 Ga0068865_100117866 Ga0068865_1001178662 325
84 3300009177 Ga0105248_10355551 Ga0105248_103555512 325
85 3300013306 Ga0163162_10003683 Ga0163162_100036836 325
86 3300014325 Ga0163163_10026851 Ga0163163_100268518 325
87 3300014968 Ga0157379_10225057 Ga0157379_102250572 325
88 3300014969 Ga0157376_10021573 Ga0157376_100215731 325
89 3300025925 Ga0207650_10003297 Ga0207650_100032972 325
90 3300025940 Ga0207691_10007392 Ga0207691_100073928 325
91 3300026095 Ga0207676_10009637 Ga0207676_100096375 325
92 3300046525 Ga0495663_0005258 Ga0495663_0005258_223_1215 325
93 3300046539 Ga0495621_0000810 Ga0495621_0000810_6278_7270 325
94 3300047318 Ga0495636_0041590 Ga0495636_0041590_765_1757 325
95 3300047472 Ga0495686_0004896 Ga0495686_0004896_3785_4771 325
96 iso_pu_bacteria 2939631187 2939631806 325
97 3300025940 Ga0207691_10002253 Ga0207691_1000225310 326
98 3300025949 Ga0207667_10161329 Ga0207667_101613293 326
99 3300044683 Ga0466965_0015249 Ga0466965_0015249_1764_2792 326
100 3300044712 Ga0453684_0107039 Ga0453684_0107039_701_1714 326
101 3300046522 Ga0495643_0033438 Ga0495643_0033438_1701_2708 326
102 3300046528 Ga0495642_0006082 Ga0495642_0006082_3066_4073 326
103 3300046542 Ga0495597_0021965 Ga0495597_0021965_951_1958 326
104 3300046665 Ga0495661_0003654 Ga0495661_0003654_5884_6891 326
105 3300048909 Ga0496106_0352730 Ga0496106_0352730_133_1140 326
106 3300049570 Ga0501033_0004682 Ga0501033_0004682_1075_2082 326
107 3300049579 Ga0501043_0024723 Ga0501043_0024723_3474_4481 326
108 3300049581 Ga0501047_0016553 Ga0501047_0016553_5680_6687 326
109 3300049589 Ga0501073_0136661 Ga0501073_0136661_460_1467 326
110 3300049822 Ga0501035_0004818 Ga0501035_0004818_4104_5111 326
111 3300049823 Ga0501044_0000953 Ga0501044_0000953_6493_7500 326
112 iso_pu_bacteria 2932422444 2932425658 326
113 iso_pu_bacteria 2941489479 2941490380 326
114 iso_pu_bacteria 8021626552 8021627020 326
115 3300003187 JGI25151J46595_10000165 JGI25151J46595_1000016529 327
116 3300005262 Ga0065165_1006966 Ga0065165_10069667 327
117 3300025292 Ga0209676_1001748 Ga0209676_10017489 327
118 3300025292 Ga0209676_1003590 Ga0209676_10035902 327
119 3300025294 Ga0209025_1000102 Ga0209025_1000102135 327
120 3300025295 Ga0209564_1006958 Ga0209564_10069584 327
121 3300025297 Ga0209758_1016657 Ga0209758_10166572 327
122 3300026041 Ga0207639_10188239 Ga0207639_101882392 327
123 3300027682 Ga0209971_1000799 Ga0209971_10007995 327
124 3300027876 Ga0209974_10010510 Ga0209974_100105103 327
125 3300048924 Ga0496121_0079924 Ga0496121_0079924_721_1716 327
126 3300049571 Ga0501034_0167522 Ga0501034_0167522_172_1173 327
127 3300049579 Ga0501043_0031313 Ga0501043_0031313_553_1554 327
128 3300053088 Ga0500644_0022374 Ga0500644_0022374_682_1716 327
129 iso_pu_bacteria 2738543013 2739252341 327
130 iso_pu_bacteria 2941489479 2941491279 327

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00106

adh_short

short chain dehydrogenase

157

351

0.96

PF13561

adh_short_C2

Enoyl-(Acyl carrier protein) reductase

163

398

0.93

PF08659

KR

KR domain

158

339

0.87

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

159

355

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
3i3o-assembly2.cif.gz_H 2.06 angstrom resolution crystal structure of a short chain dehydrogenase from bacillus anthracis str. 'ames ancestor' in complex with nad-acetone 0.9895 58 324
3i3o-assembly2.cif.gz_G 2.06 angstrom resolution crystal structure of a short chain dehydrogenase from bacillus anthracis str. 'ames ancestor' in complex with nad-acetone 0.9895 69 324
3i3o-assembly1.cif.gz_A 2.06 angstrom resolution crystal structure of a short chain dehydrogenase from bacillus anthracis str. 'ames ancestor' in complex with nad-acetone 0.9851 51 324
3r3s-assembly1.cif.gz_D structure of the ygha oxidoreductase from salmonella enterica 0.9636 48 324
3edm-assembly1.cif.gz_D crystal structure of a short chain dehydrogenase from agrobacterium tumefaciens 0.9625 81 321
ID Description Score Start End Superfamily
3i3oG00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9895 69 324 3.40.50.720
af_K7KGR3_30_220_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9882 146 324 3.40.50.720
af_Q75KH3_1_297_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9755 48 324 3.40.50.720
3r3sA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9646 48 324 3.40.50.720
3i3oG00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9575 69 324 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A418IZU3-F1-model_v4 deleted 0.9867 133 262
AF-A0A4Q5VLK3-F1-model_v4 deleted 0.9852 166 324
AF-A0A418IZU3-F1-model_v4 deleted 0.9792 133 262
AF-A0A1V3CZV1-F1-model_v4 deleted 0.9791 88 326
AF-A0A6J4KT55-F1-model_v4 Oxidoreductase, short-chain dehydrogenase/reductase family 0.9791 191 326 GO:0016614

Feature Viewer

pLDDT pTM Quality
90.15 0.89 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map