F147448

General Info

Members Datasets Scaffolds Average Seq Length
130 111 260 666

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|8056037122|8056038449
Length 689
Sequence PVSALIDPQHPRFTYGADYNPEQWGPEVWREDVRLMREAGVNLVAINIFGWAQLEPLPGQYDFSRLDAVLELLHENGISVNLGTGTASPPPWLAAEHPETLPVMVDGTVRYPGGRQAFCPSSPVFRERSLALVERVAERYGSHPAVKLWHVSNEIGCHNALCYCDVSAAAFRRWLEARHGTLDALNAAWGTAFWSQHYASWEHIQTPRLTVSTGNPGQAVDFSRFSSDELLGQYRAEAEVIRRHSSIPVTTNFMVAAHIRNQDYWQWAGDMDLIANDHYLDHRLADPLTELAFAADTTRGLAGGAPWLLMEQATSAVNWQPHNIAKEPGQLLRDTMMHVARGADGVSFFQWRASVQGSERFHSAMLPHAGTESKLWRESVELGATLDRLQPVAGSRVVASVALVFGWEPWWITDLDSHPSTEVRYLEQVHRAYAALRSHGVTVDIVRPGADLSAYALVVVPALHSVADAVADGFARYTAAGGHLVVTFFSGITDGDDRVRTGGYPGALRDVLGISTEEFFPLHAGESVDLDDGSSATIWTELLHPRGAEVLASYLDGPLPGVAAVTRHRHGDGTAWYLATNLDASSLARHLGRALGEAGVERPLPDAHPDLEVIERRGETGRFLFVFNTGGASLTLDLTGRDLVAGTADTTHLIAPGGVAVLQLRPELADSAPSTSHDPSTSHERRVAL

Samples

Sample ID Description Type Environment
1 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
2 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
3 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
4 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
5 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
6 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
7 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
8 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
9 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
10 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
11 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
12 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
13 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
14 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
15 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
16 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
17 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
18 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
19 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
20 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
21 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
22 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
23 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
24 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
25 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
26 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
27 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
28 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
29 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
30 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
31 3300042134 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_070716_126 Metagenome Rhizosphere
32 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
33 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
34 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
35 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
36 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
37 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
38 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
39 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
40 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
41 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
42 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
43 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
44 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
45 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
46 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
47 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
48 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
49 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
50 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
51 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
52 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
53 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
54 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
55 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
56 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
57 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
58 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
59 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
60 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
61 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
62 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
63 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
64 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
65 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
66 3300053732 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 endosphere Metagenome Endosphere
67 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
68 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
69 8056037122 Herbiconiux gentiana CPCC 205716 Isolate Rhizosphere
70 2582581313 Streptomyces mirabilis OV308 Isolate Rhizosphere
71 2582581314 Streptomyces mirabilis YR139 Isolate Rhizosphere
72 2643221647 Streptomyces sp. Root369 Isolate Unclassified
73 2643221711 Terrabacter sp. Root85 Isolate Unclassified
74 2739367898 Nocardioides sp. CF479 Isolate Unclassified
75 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
76 2784746768 Streptomyces griseorubiginosus SAI-142 Isolate Unclassified
77 2786546132 Streptomyces sp. W SAI-097 Isolate Unclassified
78 2799112218 Motilibacter rhizosphaerae DSM 45622 Isolate Rhizosphere
79 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
80 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
81 2811994879 Streptomyces sp. 4-17 Isolate Unclassified
82 2816332139 Pseudonocardia kunmingensis DSM 45301 Isolate Unclassified
83 2818991318 Humibacillus xanthopallidus SLBN-155 Isolate Unclassified
84 2818991458 Terrabacter sp. 3211 Isolate Rhizosphere
85 2818991462 Terrabacter sp. 3264 Isolate Rhizosphere
86 2818991469 Terrabacter lapilli 3265 Isolate Rhizosphere
87 2862382967 Streptomyces scabiei NRRL B-2795 Isolate Nodule
88 2863404153 Streptomyces scabiei SAI-025 (Annotation) (version 2) Isolate Unclassified
89 2870622029 Conyzicola lurida DSM 105784 Isolate Unclassified
90 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
91 2912715099 Streptomyces sp. Z423-1 Isolate Rhizosphere
92 2919523602 Leifsonia shinshuensis 3821 Isolate Unclassified
93 2939657138 Conyzicola nivalis 2857 Isolate Rhizosphere
94 2954380949 Streptomyces ciscaucasicus W1I15 Isolate Rhizosphere
95 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
96 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
97 2954691527 Streptomyces sp. SAI-127 Isolate Rhizosphere
98 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
99 2954711539 Streptomyces sp. SAI-090 Isolate Rhizosphere
100 2954721474 Streptomyces sp. SAI-117 Isolate Rhizosphere
101 2954731030 Streptomyces sp. SAI-133 Isolate Rhizosphere
102 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
103 2954749733 Streptomyces sp. SAI-135 Isolate Rhizosphere
104 2954759201 Streptomyces sp. SAI-208 Isolate Rhizosphere
105 2977264416 Microbacterium testaceum SORGH_AS 594 Isolate Unclassified
106 2990059506 Streptomyces sp. CAP261 Isolate Unclassified
107 8008558824 Streptomyces scabiei NRRL B-2795 Isolate Nodule
108 8008574985 Streptomyces sp. Jing01 Isolate Rhizosphere
109 8048406513 Streptomyces heilongjiangensis NEAU-W2 Isolate Unclassified
110 8054609563 Nocardioides astragali CGMCC 4.7327 Isolate Nodule
111 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 62.31
Metatranscriptomes 0
Isolates 37.69

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.31
Nodule 3.85
Rhizoplane 5.38
Rhizosphere 55.38
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070658_10000129 3300005327 Bacteria 67266
2 Ga0070710_10000519 3300005437 Bacteria 18116
3 Ga0070663_100024623 3300005455 Bacteria 4054
4 Ga0068855_100070185 3300005563 Bacteria 4076
5 Ga0075368_10000749 3300006042 Bacteria 9958
6 Ga0075367_10000132 3300006178 Bacteria 22080
7 Ga0075367_10004781 3300006178 Bacteria 6660
8 Ga0105246_10000046 3300011119 Bacteria 47180
9 Ga0157371_10006919 3300013102 Bacteria 9251
10 Ga0157370_10002122 3300013104 Bacteria 24204
11 Ga0157372_10171615 3300013307 Bacteria 2509
12 Ga0207426_1007354 3300025302 Bacteria 4623
13 Ga0207692_10000296 3300025898 Bacteria 17281
14 Ga0207705_10000001 3300025909 Bacteria 2061880
15 Ga0207667_10119353 3300025949 Bacteria 2718
16 Ga0207678_10005179 3300026067 Bacteria 11684
17 Ga0307517_10001056 3300028786 Bacteria 46663
18 Ga0307511_10003022 3300030521 Bacteria 17391
19 Ga0307512_10002271 3300030522 Bacteria 24884
20 Ga0307509_10009951 3300031507 Bacteria 11748
21 Ga0307509_10011427 3300031507 Bacteria 10748
22 Ga0307508_10018878 3300031616 Bacteria 6265
23 Ga0307514_10053314 3300031649 Bacteria 3122
24 Ga0307516_10014509 3300031730 Bacteria 8330
25 Ga0307518_10041321 3300031838 Bacteria 3357
26 Ga0395898_0003863 3300037466 Bacteria 16564
27 Ga0395898_0004164 3300037466 Bacteria 15853
28 Ga0395898_0009532 3300037466 Bacteria 10195
29 Ga0395901_0020284 3300038443 Bacteria 6804
30 Ga0395901_0035372 3300038443 Bacteria 5159
31 Ga0439436_0002440 3300041404 Bacteria 5585
32 Ga0439439_0008534 3300041406 Bacteria 2423
33 Ga0451853_0416252 3300041512 Bacteria 6018
34 Ga0439449_0000183 3300042007 Bacteria 21770
35 Ga0439449_0020422 3300042007 Bacteria 2482
36 Ga0439457_000427 3300042014 Bacteria 12122
37 Ga0450898_000547 3300042134 Bacteria 4425
38 Ga0439458_0000698 3300042157 Bacteria 8680
39 Ga0466969_0009742 3300044656 Bacteria 5092
40 Ga0466972_0001069 3300044658 Bacteria 13144
41 Ga0466965_0001517 3300044683 Bacteria 9418
42 Ga0466961_0021385 3300044693 Bacteria 4164
43 Ga0466971_0018214 3300044719 Bacteria 3110
44 Ga0495629_0034535 3300046459 Bacteria 3575
45 Ga0495638_0031742 3300046460 Bacteria 3392
46 Ga0495639_0015682 3300046475 Bacteria 3286
47 Ga0495662_0001240 3300046476 Bacteria 12574
48 Ga0495606_0001231 3300046507 Bacteria 35820
49 Ga0495668_0000326 3300046616 Bacteria 65274
50 Ga0495625_0000770 3300046660 Bacteria 44596
51 Ga0495589_0002915 3300046794 Bacteria 9452
52 Ga0495660_0008118 3300046810 Bacteria 6165
53 Ga0495636_0002055 3300047318 Bacteria 7727
54 Ga0495636_0021609 3300047318 Bacteria 2598
55 Ga0495683_0016379 3300047323 Bacteria 3851
56 Ga0495687_004299 3300047443 Bacteria 9714
57 Ga0495685_000312 3300047447 Bacteria 15909
58 Ga0495685_003703 3300047447 Bacteria 4890
59 Ga0495685_008909 3300047447 Bacteria 3345
60 Ga0495626_0000046 3300048091 Bacteria 162660
61 Ga0496103_0010141 3300048906 Bacteria 5571
62 Ga0496104_0010823 3300048907 Bacteria 8160
63 Ga0496105_0006012 3300048908 Bacteria 9272
64 Ga0496109_0060749 3300048912 Bacteria 3454
65 Ga0496110_0039917 3300048913 Bacteria 4089
66 Ga0496110_0052028 3300048913 Bacteria 3600
67 Ga0496113_0067670 3300048916 Bacteria 2709
68 nmdc:mga06z11_1843_c1 3300050494 Bacteria 7994
69 nmdc:mga06z11_22602_c1 3300050494 Bacteria 2940
70 nmdc:mga06z11_5104_c1 3300050494 Bacteria 5233
71 nmdc:mga04h51_1087_c1 3300050495 Bacteria 6268
72 Ga0500578_0004341 3300053086 Bacteria 10047
73 Ga0500652_002386 3300053131 Bacteria 5655
74 Ga0500561_0007662 3300053137 Bacteria 2114
75 Ga0500573_0000005 3300053140 Bacteria 315762
76 Ga0500573_0019727 3300053140 Bacteria 3858
77 Ga0500600_0022214 3300053149 Bacteria 3799
78 Ga0500616_0006176 3300053153 Bacteria 7915
79 Ga0500656_001265 3300053732 Bacteria 2143
80 Ga0466962_0003193 3300061719 Bacteria 7784
81 Ga0530510_0071446 3300061734 Bacteria 2519
82 8056038449 8056037122 Bacteria 3854319
83 2585311044 2582581313 Bacteria 10042643
84 2585319734 2582581314 Bacteria 11452267
85 2585321472 2582581314 Bacteria 11452267
86 2644263294 2643221647 Bacteria 10741251
87 2644267312 2643221647 Bacteria 10741251
88 2644608094 2643221711 Bacteria 4865335
89 2740166318 2739367898 Bacteria 4367674
90 2785339511 2784746763 Bacteria 9783172
91 2785343999 2784746763 Bacteria 9783172
92 2785366414 2784746768 Bacteria 10036182
93 2786670012 2786546132 Bacteria 10419719
94 2799185759 2799112218 Bacteria 4315149
95 2808920861 2808606375 Bacteria 9466072
96 2812324753 2811994872 Bacteria 4121241
97 2812361849 2811994879 Bacteria 9313447
98 2816508476 2816332139 Bacteria 9138787
99 2819428453 2818991318 Bacteria 5266538
100 2819664784 2818991458 Bacteria 4794049
101 2819689547 2818991462 Bacteria 4320267
102 2819726904 2818991469 Bacteria 4644110
103 2862385314 2862382967 Bacteria 10317375
104 2862387090 2862382967 Bacteria 10317375
105 2863405284 2863404153 Bacteria 9672205
106 2870625227 2870622029 Bacteria 3643329
107 2877684117 2877676314 Bacteria 9512378
108 2912719582 2912715099 Bacteria 9460473
109 2919526723 2919523602 Bacteria 3788128
110 2939659987 2939657138 Bacteria 3740283
111 2954382123 2954380949 Bacteria 10050426
112 2954386834 2954380949 Bacteria 10050426
113 2954676354 2954673503 Bacteria 9685905
114 2954687814 2954682443 Bacteria 9862841
115 2954697652 2954691527 Bacteria 10720516
116 2954704564 2954701450 Bacteria 10834262
117 2954719261 2954711539 Bacteria 10867210
118 2954729233 2954721474 Bacteria 10456478
119 2954732577 2954731030 Bacteria 10243860
120 2954748133 2954740390 Bacteria 10229294
121 2954751456 2954749733 Bacteria 10366972
122 2954767257 2954759201 Bacteria 9358192
123 2977264513 2977264416 Bacteria 3750737
124 2990060960 2990059506 Bacteria 9321252
125 8008559792 8008558824 Bacteria 10610750
126 8008565395 8008558824 Bacteria 10610750
127 8008575833 8008574985 Bacteria 7815457
128 8048413300 8048406513 Bacteria 8936924
129 8054610210 8054609563 Bacteria 5170090
130 8056836140 8056829672 Bacteria 9045328
131 Ga0070658_10000129
132 Ga0070710_10000519
133 Ga0070663_100024623
134 Ga0068855_100070185
135 Ga0075368_10000749
136 Ga0075367_10000132
137 Ga0075367_10004781
138 Ga0105246_10000046
139 Ga0157371_10006919
140 Ga0157370_10002122
141 Ga0157372_10171615
142 Ga0207426_1007354
143 Ga0207692_10000296
144 Ga0207705_10000001
145 Ga0207667_10119353
146 Ga0207678_10005179
147 Ga0307517_10001056
148 Ga0307511_10003022
149 Ga0307512_10002271
150 Ga0307509_10009951
151 Ga0307509_10011427
152 Ga0307508_10018878
153 Ga0307514_10053314
154 Ga0307516_10014509
155 Ga0307518_10041321
156 Ga0395898_0003863
157 Ga0395898_0004164
158 Ga0395898_0009532
159 Ga0395901_0020284
160 Ga0395901_0035372
161 Ga0439436_0002440
162 Ga0439439_0008534
163 Ga0451853_0416252
164 Ga0439449_0000183
165 Ga0439449_0020422
166 Ga0439457_000427
167 Ga0450898_000547
168 Ga0439458_0000698
169 Ga0466969_0009742
170 Ga0466972_0001069
171 Ga0466965_0001517
172 Ga0466961_0021385
173 Ga0466971_0018214
174 Ga0495629_0034535
175 Ga0495638_0031742
176 Ga0495639_0015682
177 Ga0495662_0001240
178 Ga0495606_0001231
179 Ga0495668_0000326
180 Ga0495625_0000770
181 Ga0495589_0002915
182 Ga0495660_0008118
183 Ga0495636_0002055
184 Ga0495636_0021609
185 Ga0495683_0016379
186 Ga0495687_004299
187 Ga0495685_000312
188 Ga0495685_003703
189 Ga0495685_008909
190 Ga0495626_0000046
191 Ga0496103_0010141
192 Ga0496104_0010823
193 Ga0496105_0006012
194 Ga0496109_0060749
195 Ga0496110_0039917
196 Ga0496110_0052028
197 Ga0496113_0067670
198 nmdc:mga06z11_1843_c1
199 nmdc:mga06z11_22602_c1
200 nmdc:mga06z11_5104_c1
201 nmdc:mga04h51_1087_c1
202 Ga0500578_0004341
203 Ga0500652_002386
204 Ga0500561_0007662
205 Ga0500573_0000005
206 Ga0500573_0019727
207 Ga0500600_0022214
208 Ga0500616_0006176
209 Ga0500656_001265
210 Ga0466962_0003193
211 Ga0530510_0071446
212 8056038449
213 2585311044
214 2585319734
215 2585321472
216 2644263294
217 2644267312
218 2644608094
219 2740166318
220 2785339511
221 2785343999
222 2785366414
223 2786670012
224 2799185759
225 2808920861
226 2812324753
227 2812361849
228 2816508476
229 2819428453
230 2819664784
231 2819689547
232 2819726904
233 2862385314
234 2862387090
235 2863405284
236 2870625227
237 2877684117
238 2912719582
239 2919526723
240 2939659987
241 2954382123
242 2954386834
243 2954676354
244 2954687814
245 2954697652
246 2954704564
247 2954719261
248 2954729233
249 2954732577
250 2954748133
251 2954751456
252 2954767257
253 2977264513
254 2990060960
255 8008559792
256 8008565395
257 8008575833
258 8048413300
259 8054610210
260 8056836140

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02449

Glyco_hydro_42

Beta-galactosidase

18

389

0.99

PF08532

Glyco_hydro_42M

Beta-galactosidase trimerisation domain

399

601

0.97

PF08533

Glyco_hydro_42C

Beta-galactosidase C-terminal domain

610

664

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
3tts-assembly1.cif.gz_A crystal structure of beta-galactosidase from bacillus circulans sp. alkalophilus 0.9584 15 671
5dfa-assembly1.cif.gz_B 3d structure of the e323a catalytic mutant of gan42b, a gh42 beta-galactosidase from g. stearothermophilus 0.9562 15 670
4oif-assembly1.cif.gz_C 3d structure of gan42b, a gh42 beta-galactosidase from g. 0.9536 15 670
4ucf-assembly1.cif.gz_C crystal structure of bifidobacterium bifidum beta-galactosidase in complex with alpha-galactose 0.9526 10 670
4ucf-assembly1.cif.gz_A crystal structure of bifidobacterium bifidum beta-galactosidase in complex with alpha-galactose 0.9492 11 670
ID Description Score Start End Superfamily
4uoqB01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycosidases 0.9594 10 398 3.20.20.80
3ttyC02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Class I glutamine amidotransferase (GATase) domain 0.9544 403 609 3.40.50.880
5dfaC01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycosidases 0.9544 15 399 3.20.20.80
3ttyF01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycosidases 0.9479 15 396 3.20.20.80
1kwkA01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycosidases 0.9404 18 395 3.20.20.80
ID Description Score Start End GO Terms
AF-A0A2W2BET4-F1-model_v4 Beta-galactosidase 1.002 16 90 GO:0004565
GO:0005975
GO:0009341
AF-A0A7W0JAH5-F1-model_v4 Beta-galactosidase 0.9963 16 95 GO:0004565
GO:0005975
GO:0009341
AF-A0A3B8XCM5-F1-model_v4 Beta-galactosidase 0.9924 17 257 GO:0004565
GO:0005975
GO:0009341
AF-W4QVL5-F1-model_v4 Beta-galactosidase 0.9921 17 146 GO:0004565
GO:0005975
GO:0009341
AF-A0A3D0ZH91-F1-model_v4 beta-galactosidase (EC 3.2.1.23) 0.9915 347 672 GO:0004565
GO:0006012
GO:0009341

Map