F148133

General Info

Members Datasets Scaffolds Average Seq Length
131 105 130 558

Family's Representative Sequence

Representative Sequence 3300005340|Ga0070689_100012041|Ga0070689_1000120414
Length 642
Sequence MPIRRSGIEISHSKGYSTSAKIATGQQNTNSKHQSTKPMKSFMSYEYPSRPDFSTCDLGRARYGLVRLPRPRLKSCVSAIKALTLQLRRVSLPTEAGMKKATSIGEYLIHRLAAHGVRHVFGIPGDYVLGFYEQLLHSPIRIVNTCDEQGAGFAADAYARVRGLGVVCVTYCVGGLKVANTTAEAFAEKSPVVVISGAPGMKEREKNPLLHHKVREFDTQKKVFEQLTIASTVLSDPQTAFQEIDRVLHAALRYKRPVYIELPRDVVALPGIPHHRPREIHETSDRHTLREALGEAVEMINRASKPVILADVEVHRFGLQNALLGLAAKTDIPVAATILGKSVIGEQHPFYMGVYEGAMGRDDVRRYVETSDCVILLGAFMTDINLGIYTARLDPARSIYATSEKLSIRYHTYENVRFKDFVHGLLKAKLRRRAPGRIPRPRPLAARPNVRGKSKVTVKSLFQRLNEFLDERKVVVADIGDALFGAADLFIHQRTEFLGPAYYASMGFAVPAGIGAQLANPKLRPLVLVGDGAFQMTGMELATAARYKLNPIVVVLNNRGYGTERQIHDGPYNDLWLWNFSRIPEILGAGCGFEVETEEQLDQALLAAGRFTDGFCLLDVKLKPLDRSPALQRLAERLAKRL

Samples

Sample ID Description Type Environment
1 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
2 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
3 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
4 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
5 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
6 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
7 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
8 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
9 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
10 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
11 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
12 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
13 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
14 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
15 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
16 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
17 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
18 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
19 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
20 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
21 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
22 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
23 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
24 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
25 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
26 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
28 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
29 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
30 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
31 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
32 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
33 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
34 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
47 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
48 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
49 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
50 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
51 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
52 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
53 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
54 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
55 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
56 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
57 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
58 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
59 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
60 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
61 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
62 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
63 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
64 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
65 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
66 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
67 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
68 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
69 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
70 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
71 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
72 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
73 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
74 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
75 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
76 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
77 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
78 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
79 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
80 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
81 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
82 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
83 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
84 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
85 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
86 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
87 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
90 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
91 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
92 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
93 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
94 3300049649 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_A_0_drought Metagenome Rhizosphere
95 3300049662 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F2_A_2_control Metagenome Rhizosphere
96 3300049706 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_B_2_control Metagenome Rhizosphere
97 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
98 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
100 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
101 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
102 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
103 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
104 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
105 8002060224 Methylocystis sp. Sn-Cys Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 98.47
Metatranscriptomes 0.76
Isolates 0.76

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 2.29
Rhizosphere 94.66
Stem 0
Stem Tuber 0
Unclassified 3.05

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10170970 3300003323 Bacteria 5565
2 JGI25407J50210_10012977 3300003373 Archaea 2139
3 Ga0070690_100068230 3300005330 Unclassified 2306
4 Ga0070666_10024592 3300005335 Bacteria 3925
5 Ga0070689_100008343 3300005340 Bacteria 7294
6 Ga0070689_100012041 3300005340 Bacteria 6218
7 Ga0070668_100028706 3300005347 Bacteria 4222
8 Ga0070688_100029006 3300005365 Bacteria 3309
9 Ga0070709_10006727 3300005434 Archaea 6276
10 Ga0070709_10025234 3300005434 Archaea 3509
11 Ga0070709_10049407 3300005434 Bacteria 2630
12 Ga0070714_100085832 3300005435 Archaea 2750
13 Ga0070713_100105535 3300005436 Unclassified 2447
14 Ga0070713_100163939 3300005436 Bacteria 1986
15 Ga0070701_10030422 3300005438 Unclassified 2671
16 Ga0070707_100009404 3300005468 Unclassified 9072
17 Ga0070686_100092185 3300005544 Bacteria 2028
18 Ga0068857_100002643 3300005577 Bacteria 14717
19 Ga0068856_100220210 3300005614 Bacteria 1913
20 Ga0068863_100019774 3300005841 Bacteria 6440
21 Ga0068860_100000107 3300005843 Bacteria 133502
22 Ga0081455_10001843 3300005937 Archaea 25512
23 Ga0081455_10008608 3300005937 Archaea 10586
24 Ga0081538_10012345 3300005981 Archaea 6851
25 Ga0081538_10032176 3300005981 Archaea 3522
26 Ga0070717_10067771 3300006028 Archaea 2970
27 Ga0068871_100046290 3300006358 Bacteria 3503
28 Ga0075431_100006912 3300006847 Bacteria 11279
29 Ga0075434_100020520 3300006871 Archaea 6409
30 Ga0075429_100048157 3300006880 Unclassified 3708
31 Ga0105240_10000765 3300009093 Bacteria 58427
32 Ga0111539_10139976 3300009094 Archaea 2833
33 Ga0111539_10176258 3300009094 Bacteria 2497
34 Ga0105245_10032424 3300009098 Bacteria 4625
35 Ga0114129_10001647 3300009147 Archaea 30352
36 Ga0105248_10085606 3300009177 Bacteria 3547
37 Ga0105238_10042035 3300009551 Bacteria 4628
38 Ga0157375_10000006 3300013308 Bacteria 384086
39 Ga0163163_10000063 3300014325 Bacteria 117632
40 Ga0163163_10173176 3300014325 Bacteria 2205
41 Ga0213876_10019929 3300021384 Bacteria 3543
42 Ga0207680_10052772 3300025903 Bacteria 2438
43 Ga0207699_10086868 3300025906 Bacteria 1954
44 Ga0207695_10021367 3300025913 Bacteria 7384
45 Ga0207646_10013580 3300025922 Unclassified 7778
46 Ga0207664_10061385 3300025929 Archaea 2999
47 Ga0207670_10001172 3300025936 Bacteria 13833
48 Ga0207670_10040863 3300025936 Bacteria 3046
49 Ga0207665_10106513 3300025939 Archaea 1965
50 Ga0207691_10011019 3300025940 Bacteria 8673
51 Ga0207668_10015642 3300025972 Bacteria 4718
52 Ga0207702_10022197 3300026078 Bacteria 5261
53 Ga0207674_10011949 3300026116 Bacteria 9735
54 Ga0268264_10000807 3300028381 Bacteria 33745
55 Ga0265337_1009414 3300028556 Bacteria 3487
56 Ga0265338_10033966 3300028800 Bacteria 4940
57 Ga0265338_10034646 3300028800 Bacteria 4875
58 Ga0265338_10066854 3300028800 Unclassified 3108
59 Ga0265329_10006863 3300031242 Bacteria 4465
60 Ga0265339_10004794 3300031249 Bacteria 9154
61 Ga0265327_10000707 3300031251 Bacteria 52780
62 Ga0265314_10000234 3300031711 Bacteria 82654
63 Ga0265314_10002900 3300031711 Bacteria 17021
64 Ga0316578_10077918 3300031728 Unclassified 1969
65 Ga0307416_100079579 3300032002 Archaea 2762
66 Ga0316588_1002007 3300033528 Bacteria 3478
67 Ga0373954_0014723 3300035118 Bacteria 3489
68 Ga0316574_0055404 3300035398 Bacteria 2478
69 Ga0373935_0052640 3300035692 Bacteria 2588
70 Ga0373933_0097948 3300035724 Bacteria 1817
71 Ga0373947_0039211 3300035725 Bacteria 2818
72 Ga0373925_0034615 3300037068 Bacteria 3723
73 Ga0436365_1806974 3300039437 Bacteria 7849
74 Ga0451577_0000896 3300042876 Bacteria 44127
75 Ga0453684_0002956 3300044712 Bacteria 39829
76 Ga0453684_0025898 3300044712 Bacteria 8494
77 Ga0453684_0104265 3300044712 Bacteria 3463
78 Ga0451576_0108891 3300045051 Bacteria 2883
79 Ga0451576_0120297 3300045051 Bacteria 2734
80 Ga0451576_0202961 3300045051 Bacteria 2071
81 Ga0495592_0000027 3300046454 Bacteria 132938
82 Ga0495662_0033837 3300046476 Bacteria 2469
83 Ga0495618_0001770 3300046514 Bacteria 14313
84 Ga0495628_0001345 3300046516 Bacteria 22540
85 Ga0495628_0110406 3300046516 Bacteria 2116
86 Ga0495630_0000396 3300046517 Bacteria 34306
87 Ga0495630_0002532 3300046517 Bacteria 12677
88 Ga0495630_0004122 3300046517 Bacteria 10183
89 Ga0495630_0130466 3300046517 Bacteria 1909
90 Ga0495666_0010131 3300046526 Bacteria 4703
91 Ga0495586_0000259 3300046535 Bacteria 34693
92 Ga0495586_0000556 3300046535 Bacteria 21644
93 Ga0495586_0029486 3300046535 Unclassified 2936
94 Ga0495587_0076872 3300046536 Bacteria 1939
95 Ga0495599_0074908 3300046678 Bacteria 2113
96 Ga0495613_0039147 3300046689 Bacteria 3515
97 Ga0495624_0075916 3300046690 Bacteria 2086
98 Ga0495581_0064390 3300047315 Bacteria 2118
99 Ga0495674_0001383 3300047319 Bacteria 23681
100 Ga0495675_0032632 3300047444 Bacteria 3323
101 Ga0495686_0000301 3300047472 Bacteria 84924
102 Ga0496104_0079437 3300048907 Bacteria 3127
103 Ga0496110_0041349 3300048913 Archaea 4022
104 Ga0496114_0169031 3300048917 Bacteria 1905
105 Ga0501034_0000349 3300049571 Bacteria 79675
106 Ga0501039_0000187 3300049575 Archaea 44433
107 Ga0501041_0000292 3300049577 Archaea 24118
108 Ga0501041_0051020 3300049577 Archaea 2521
109 Ga0501042_0004264 3300049578 Archaea 9106
110 Ga0501043_0010063 3300049579 Bacteria 7415
111 Ga0501046_0085058 3300049580 Bacteria 2439
112 Ga0501071_0000553 3300049587 Archaea 19282
113 Ga0501072_0008007 3300049588 Bacteria 8019
114 Ga0501075_0010459 3300049591 Bacteria 6518
115 Ga0501076_0001560 3300049592 Archaea 15350
116 Ga0501076_0002828 3300049592 Archaea 12001
117 Ga0501077_0004002 3300049593 Bacteria 8892
118 Ga0501198_000153 3300049649 Archaea 9543
119 Ga0501222_002130 3300049662 Archaea 2745
120 Ga0501229_001370 3300049706 Archaea 2846
121 Ga0501081_0003000 3300049743 Bacteria 10714
122 Ga0501081_0103875 3300049743 Unclassified 2011
123 Ga0501044_0024385 3300049823 Bacteria 6423
124 Ga0501045_0012357 3300049824 Archaea 6015
125 nmdc:mga05p37_13569_c1 3300050507 Archaea 9767
126 nmdc:mga06r32_55521_c1 3300050510 Unclassified 3799
127 nmdc:mga0n895_23370_c1 3300050512 Archaea 5810
128 Ga0501082_0001783 3300060353 Archaea 18928
129 Ga0501082_0013693 3300060353 Bacteria 6972
130 Ga0530510_0000227 3300061734 Archaea 35123

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300025940 Ga0207691_10011019 Ga0207691_100110195 517
2 3300047472 Ga0495686_0000301 Ga0495686_0000301_71398_73038 518
3 3300033528 Ga0316588_1002007 Ga0316588_10020072 524
4 3300046536 Ga0495587_0076872 Ga0495587_0076872_32_1612 525
5 3300031711 Ga0265314_10002900 Ga0265314_100029007 531
6 3300049580 Ga0501046_0085058 Ga0501046_0085058_216_1895 535
7 3300032002 Ga0307416_100079579 Ga0307416_1000795792 536
8 3300049649 Ga0501198_000153 Ga0501198_000153_4305_6035 536
9 3300049706 Ga0501229_001370 Ga0501229_001370_864_2594 536
10 3300006871 Ga0075434_100020520 Ga0075434_1000205204 537
11 3300009147 Ga0114129_10001647 Ga0114129_100016472 537
12 3300049571 Ga0501034_0000349 Ga0501034_0000349_60692_62362 537
13 3300049662 Ga0501222_002130 Ga0501222_002130_791_2521 537
14 3300050507 nmdc:mga05p37_13569_c1 nmdc:mga05p37_13569_c1_2291_4006 537
15 3300050512 nmdc:mga0n895_23370_c1 nmdc:mga0n895_23370_c1_2977_4692 537
16 iso_pu_bacteria 8002060224 8002063084 537
17 3300005347 Ga0070668_100028706 Ga0070668_1000287062 538
18 3300025972 Ga0207668_10015642 Ga0207668_100156422 538
19 3300021384 Ga0213876_10019929 Ga0213876_100199292 540
20 3300039437 Ga0436365_1806974 Ga0436365_1806974_3532_5160 540
21 3300003373 JGI25407J50210_10012977 JGI25407J50210_100129772 541
22 3300005981 Ga0081538_10012345 Ga0081538_100123459 541
23 3300005434 Ga0070709_10006727 Ga0070709_100067277 543
24 3300005435 Ga0070714_100085832 Ga0070714_1000858321 543
25 3300005468 Ga0070707_100009404 Ga0070707_1000094046 543
26 3300005544 Ga0070686_100092185 Ga0070686_1000921851 543
27 3300005843 Ga0068860_100000107 Ga0068860_10000010729 543
28 3300005937 Ga0081455_10008608 Ga0081455_1000860814 543
29 3300005981 Ga0081538_10032176 Ga0081538_100321761 543
30 3300006358 Ga0068871_100046290 Ga0068871_1000462902 543
31 3300009098 Ga0105245_10032424 Ga0105245_100324242 543
32 3300025922 Ga0207646_10013580 Ga0207646_100135807 543
33 3300025929 Ga0207664_10061385 Ga0207664_100613852 543
34 3300025936 Ga0207670_10040863 Ga0207670_100408633 543
35 3300025939 Ga0207665_10106513 Ga0207665_101065131 543
36 3300028381 Ga0268264_10000807 Ga0268264_100008072 543
37 3300042876 Ga0451577_0000896 Ga0451577_0000896_39247_40881 543
38 3300044712 Ga0453684_0002956 Ga0453684_0002956_3145_4779 543
39 3300048913 Ga0496110_0041349 Ga0496110_0041349_1286_2995 543
40 3300005330 Ga0070690_100068230 Ga0070690_1000682302 544
41 3300005335 Ga0070666_10024592 Ga0070666_100245923 544
42 3300005340 Ga0070689_100008343 Ga0070689_1000083435 544
43 3300005365 Ga0070688_100029006 Ga0070688_1000290063 544
44 3300005434 Ga0070709_10049407 Ga0070709_100494071 544
45 3300005436 Ga0070713_100105535 Ga0070713_1001055351 544
46 3300005436 Ga0070713_100163939 Ga0070713_1001639391 544
47 3300005438 Ga0070701_10030422 Ga0070701_100304221 544
48 3300006847 Ga0075431_100006912 Ga0075431_1000069126 544
49 3300006880 Ga0075429_100048157 Ga0075429_1000481573 544
50 3300009093 Ga0105240_10000765 Ga0105240_1000076542 544
51 3300009094 Ga0111539_10176258 Ga0111539_101762582 544
52 3300009177 Ga0105248_10085606 Ga0105248_100856062 544
53 3300013308 Ga0157375_10000006 Ga0157375_1000000677 544
54 3300014325 Ga0163163_10000063 Ga0163163_1000006385 544
55 3300014325 Ga0163163_10173176 Ga0163163_101731761 544
56 3300025903 Ga0207680_10052772 Ga0207680_100527722 544
57 3300025906 Ga0207699_10086868 Ga0207699_100868682 544
58 3300025913 Ga0207695_10021367 Ga0207695_100213674 544
59 3300025936 Ga0207670_10001172 Ga0207670_100011729 544
60 3300028556 Ga0265337_1009414 Ga0265337_10094143 544
61 3300028800 Ga0265338_10033966 Ga0265338_100339662 544
62 3300028800 Ga0265338_10066854 Ga0265338_100668542 544
63 3300031242 Ga0265329_10006863 Ga0265329_100068632 544
64 3300031249 Ga0265339_10004794 Ga0265339_100047945 544
65 3300031711 Ga0265314_10000234 Ga0265314_1000023421 544
66 3300031728 Ga0316578_10077918 Ga0316578_100779181 544
67 3300035118 Ga0373954_0014723 Ga0373954_0014723_1037_2674 544
68 3300035398 Ga0316574_0055404 Ga0316574_0055404_233_1879 544
69 3300035692 Ga0373935_0052640 Ga0373935_0052640_662_2359 544
70 3300035725 Ga0373947_0039211 Ga0373947_0039211_53_1705 544
71 3300037068 Ga0373925_0034615 Ga0373925_0034615_153_1850 544
72 3300044712 Ga0453684_0104265 Ga0453684_0104265_1486_3123 544
73 3300045051 Ga0451576_0108891 Ga0451576_0108891_1132_2820 544
74 3300045051 Ga0451576_0120297 Ga0451576_0120297_329_1966 544
75 3300045051 Ga0451576_0202961 Ga0451576_0202961_30_1736 544
76 3300046454 Ga0495592_0000027 Ga0495592_0000027_50865_52511 544
77 3300046476 Ga0495662_0033837 Ga0495662_0033837_649_2295 544
78 3300046514 Ga0495618_0001770 Ga0495618_0001770_7355_9001 544
79 3300046516 Ga0495628_0001345 Ga0495628_0001345_13902_15548 544
80 3300046516 Ga0495628_0110406 Ga0495628_0110406_165_1802 544
81 3300046517 Ga0495630_0000396 Ga0495630_0000396_13156_14808 544
82 3300046517 Ga0495630_0002532 Ga0495630_0002532_190_1887 544
83 3300046517 Ga0495630_0004122 Ga0495630_0004122_811_2457 544
84 3300046517 Ga0495630_0130466 Ga0495630_0130466_140_1777 544
85 3300046526 Ga0495666_0010131 Ga0495666_0010131_1903_3555 544
86 3300046535 Ga0495586_0000259 Ga0495586_0000259_13551_15203 544
87 3300046535 Ga0495586_0000556 Ga0495586_0000556_11937_13583 544
88 3300046535 Ga0495586_0029486 Ga0495586_0029486_374_2101 544
89 3300046678 Ga0495599_0074908 Ga0495599_0074908_232_1878 544
90 3300046689 Ga0495613_0039147 Ga0495613_0039147_964_2616 544
91 3300046690 Ga0495624_0075916 Ga0495624_0075916_355_2001 544
92 3300047315 Ga0495581_0064390 Ga0495581_0064390_61_1707 544
93 3300047319 Ga0495674_0001383 Ga0495674_0001383_824_2476 544
94 3300048907 Ga0496104_0079437 Ga0496104_0079437_1334_3025 544
95 3300048917 Ga0496114_0169031 Ga0496114_0169031_139_1830 544
96 3300049577 Ga0501041_0051020 Ga0501041_0051020_17_1738 544
97 3300049592 Ga0501076_0002828 Ga0501076_0002828_7422_9143 544
98 3300049743 Ga0501081_0103875 Ga0501081_0103875_170_1891 544
99 3300049823 Ga0501044_0024385 Ga0501044_0024385_3035_4714 544
100 3300049824 Ga0501045_0012357 Ga0501045_0012357_2290_4011 544
101 3300050510 nmdc:mga06r32_55521_c1 nmdc:mga06r32_55521_c1_776_2461 544
102 3300060353 Ga0501082_0001783 Ga0501082_0001783_13881_15602 544
103 3300060353 Ga0501082_0013693 Ga0501082_0013693_884_2563 544
104 3300003323 rootH1_10170970 rootH1_101709704 545
105 3300005340 Ga0070689_100012041 Ga0070689_1000120414 545
106 3300005434 Ga0070709_10025234 Ga0070709_100252343 545
107 3300005577 Ga0068857_100002643 Ga0068857_1000026439 545
108 3300005614 Ga0068856_100220210 Ga0068856_1002202102 545
109 3300005841 Ga0068863_100019774 Ga0068863_1000197743 545
110 3300005937 Ga0081455_10001843 Ga0081455_1000184331 545
111 3300006028 Ga0070717_10067771 Ga0070717_100677711 545
112 3300009094 Ga0111539_10139976 Ga0111539_101399761 545
113 3300009551 Ga0105238_10042035 Ga0105238_100420353 545
114 3300026078 Ga0207702_10022197 Ga0207702_100221973 545
115 3300026116 Ga0207674_10011949 Ga0207674_100119494 545
116 3300028800 Ga0265338_10034646 Ga0265338_100346463 545
117 3300031251 Ga0265327_10000707 Ga0265327_1000070719 545
118 3300035724 Ga0373933_0097948 Ga0373933_0097948_46_1749 545
119 3300044712 Ga0453684_0025898 Ga0453684_0025898_2314_4056 545
120 3300047444 Ga0495675_0032632 Ga0495675_0032632_314_2029 545
121 3300049575 Ga0501039_0000187 Ga0501039_0000187_12725_14488 545
122 3300049577 Ga0501041_0000292 Ga0501041_0000292_2350_4113 545
123 3300049578 Ga0501042_0004264 Ga0501042_0004264_1651_3414 545
124 3300049579 Ga0501043_0010063 Ga0501043_0010063_3304_5067 545
125 3300049587 Ga0501071_0000553 Ga0501071_0000553_16908_18671 545
126 3300049588 Ga0501072_0008007 Ga0501072_0008007_4951_6714 545
127 3300049591 Ga0501075_0010459 Ga0501075_0010459_2621_4384 545
128 3300049592 Ga0501076_0001560 Ga0501076_0001560_12787_14550 545
129 3300049593 Ga0501077_0004002 Ga0501077_0004002_3808_5571 545
130 3300049743 Ga0501081_0003000 Ga0501081_0003000_6783_8546 545
131 3300061734 Ga0530510_0000227 Ga0530510_0000227_21619_23382 545

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02776

TPP_enzyme_N

Thiamine pyrophosphate enzyme, N-terminal TPP binding domain

102

223

0.92

PF02775

TPP_enzyme_C

Thiamine pyrophosphate enzyme, C-terminal TPP binding domain

478

620

0.9

PF00205

TPP_enzyme_M

Thiamine pyrophosphate enzyme, central domain

293

418

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
5euj-assembly3.cif.gz_L pyruvate decarboxylase from zymobacter palmae 0.9418 6 541
2vbi-assembly2.cif.gz_G holostructure of pyruvate decarboxylase from acetobacter pasteurianus 0.9303 7 543
5npu-assembly1.cif.gz_A inferred ancestral pyruvate decarboxylase 0.9284 7 543
2nxw-assembly1.cif.gz_B crystal structure of phenylpyruvate decarboxylase of azospirillum brasilense 0.9283 6 542
2q5q-assembly1.cif.gz_A x-ray structure of phenylpyruvate decarboxylase in complex with 3-deaza-thdp and 5-phenyl-2-oxo-valeric acid 0.9277 6 539
ID Description Score Start End Superfamily
af_P9WG37_364_553_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.957 352 534 3.40.50.970
af_Q2G1H0_348_539_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9521 351 538 3.40.50.970
5npuC01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9506 7 175 3.40.50.970
1zpdB03 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9448 350 532 3.40.50.970
af_O42873_194_354_3.40.50.1220 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;TPP-binding domain 0.9444 188 333 3.40.50.1220
ID Description Score Start End GO Terms
AF-A0A7C2S8Y6-F1-model_v4 Alpha-keto acid decarboxylase family protein 0.9713 1 544 GO:0000287
GO:0000949
GO:0004737
GO:0005829
GO:0030976
AF-A0A7V4JRM5-F1-model_v4 Alpha-keto acid decarboxylase family protein 0.9668 126 545 GO:0000287
GO:0000949
GO:0004737
GO:0005829
GO:0030976
AF-A0A523P806-F1-model_v4 Alpha-keto acid decarboxylase family protein 0.9578 3 545 GO:0000287
GO:0000949
GO:0004737
GO:0005829
GO:0030976
AF-A0A523P806-F1-model_v4 Alpha-keto acid decarboxylase family protein 0.9543 3 545 GO:0000287
GO:0000949
GO:0004737
GO:0005829
GO:0030976
AF-A0A7C3ZBW1-F1-model_v4 Alpha-keto acid decarboxylase family protein 0.9465 5 539 GO:0000287
GO:0000949
GO:0004737
GO:0005829
GO:0030976

Feature Viewer

pLDDT pTM Quality
87.09 0.9 High
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Predicted Structure (AlphaFold2)

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