F148779

General Info

Members Datasets Scaffolds Average Seq Length
131 110 129 490

Family's Representative Sequence

Representative Sequence 3300006177|Ga0075362_10033689|Ga0075362_100336892
Length 531
Sequence MVPDGTQGRALRTIPAQEMTMTENQANPSGPDLTQGIAFAELADGGMFAGHVGDDQVLLARVGEQVFAVAAQCSHYHGPLAEGLVVGEMVRCPWHHACFSLRTGKAIGAPALSPIDCWSVDRRDGKVFVTAKRAAAKPASRLVAGAVPDRIVIVGGGAAGFVAAQTLRNEQYRGSIVMLSNDDAAPVDRPNLSKDYLAGNAPEDWIPLRSDDFYAENGIELRLKTNVAAIDARAREVALADGSKVPYDRLLLATGAEPVRLSFPGADQPHVHTLRSLADSRAIVEQARTARRVVVMGASFIGLEAAASLRARKIEVHVVAPEKRPMERILGPGMGDFVRSLHEEHGVVFHLEDTVNAIDGRRMTLKSGGTIEADFAVMGVGVRPRMDLAEKAGLTIDRGIVADAYLETSARGIFAAGDIVRWPDPLSGQSIRVEHWVVAERQGKAAALNMLGLQQKFTDVPFFWSQHYDIPINYVGHAEKWDELAVEGDIAGKDCLLRFKLKGRTLAVASIFRDLASLQEEAAMERATAAR

Samples

Sample ID Description Type Environment
1 2894652903 Phyllobacterium sp. SYP-B3895 Isolate Rhizosphere
2 2922425934
3 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
7 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
8 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
9 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
10 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
11 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
12 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
13 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
14 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
15 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
19 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
20 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
21 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
22 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
23 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
24 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
25 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
26 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
27 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
28 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
29 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
30 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
32 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
33 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
34 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
35 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
36 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
37 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
38 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
39 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300027682 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) Metagenome Rhizosphere
55 3300027695 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes) (version 2) Metagenome Rhizosphere
56 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
57 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
58 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
60 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
61 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
62 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
63 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
64 3300034820 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2 Metagenome Rhizosphere
65 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
66 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
67 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
68 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
69 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
70 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
71 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
72 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
73 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
74 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
75 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
76 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
77 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
78 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
79 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
81 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
82 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
83 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
84 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
85 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
87 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
88 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
89 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
90 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
91 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
92 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
93 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
94 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
95 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
96 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
97 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
98 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
99 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
101 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
102 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
103 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
104 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
105 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
106 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
107 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
108 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
109 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
110 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.23
Metatranscriptomes 0
Isolates 0.77

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.69
Nodule 0
Rhizoplane 2.29
Rhizosphere 86.26
Stem 0
Stem Tuber 0
Unclassified 0.76

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0065712_10082958 3300005290 Bacteria 2873
2 Ga0070658_10070938 3300005327 Bacteria 2853
3 Ga0070683_100004584 3300005329 Bacteria 11407
4 Ga0070683_100037876 3300005329 Bacteria 4416
5 Ga0070666_10001820 3300005335 Bacteria 12989
6 Ga0070660_100075943 3300005339 Bacteria 2631
7 Ga0070661_100110347 3300005344 Unclassified 2053
8 Ga0070659_100092221 3300005366 Bacteria 2429
9 Ga0070681_10037758 3300005458 Bacteria 4844
10 Ga0068867_100135765 3300005459 Bacteria 1917
11 Ga0070706_100040190 3300005467 Bacteria 4317
12 Ga0070698_100045699 3300005471 Bacteria 4481
13 Ga0070684_100044803 3300005535 Bacteria 3827
14 Ga0070697_100181000 3300005536 Bacteria 1786
15 Ga0070665_100015157 3300005548 Bacteria 7738
16 Ga0068855_100091357 3300005563 Bacteria 3512
17 Ga0068852_100023348 3300005616 Bacteria 4977
18 Ga0068862_100032555 3300005844 Bacteria 4405
19 Ga0081455_10006653 3300005937 Bacteria 12358
20 Ga0081539_10003370 3300005985 Bacteria 19783
21 Ga0075365_10065688 3300006038 Bacteria 2432
22 Ga0075362_10001984 3300006177 Bacteria 6732
23 Ga0075362_10005543 3300006177 Bacteria 4629
24 Ga0075362_10033689 3300006177 Bacteria 2229
25 Ga0075369_10003507 3300006186 Bacteria 5711
26 Ga0075428_100003147 3300006844 Bacteria 18028
27 Ga0075430_100041586 3300006846 Bacteria 3888
28 Ga0075433_10028716 3300006852 Bacteria 4731
29 Ga0075429_100003855 3300006880 Bacteria 12810
30 Ga0105240_10042536 3300009093 Bacteria 5789
31 Ga0111539_10002520 3300009094 Bacteria 24274
32 Ga0111539_10021060 3300009094 Bacteria 8030
33 Ga0105247_10021782 3300009101 Bacteria 3856
34 Ga0114129_10003096 3300009147 Bacteria 23331
35 Ga0114129_10128491 3300009147 Bacteria 3483
36 Ga0105237_10043512 3300009545 Bacteria 4523
37 Ga0105237_10081710 3300009545 Bacteria 3222
38 Ga0105238_10001829 3300009551 Bacteria 21323
39 Ga0105238_10006484 3300009551 Bacteria 11641
40 Ga0157370_10016239 3300013104 Bacteria 7544
41 Ga0163163_10069661 3300014325 Bacteria 3502
42 Ga0163163_10088358 3300014325 Bacteria 3110
43 Ga0157379_10002550 3300014968 Bacteria 15282
44 Ga0209233_1006207 3300025261 Bacteria 3873
45 Ga0207697_10004861 3300025315 Bacteria 6346
46 Ga0207680_10018219 3300025903 Bacteria 3727
47 Ga0207663_10077136 3300025916 Unclassified 2168
48 Ga0207657_10003799 3300025919 Bacteria 16058
49 Ga0207649_10073161 3300025920 Bacteria 2195
50 Ga0207652_10090260 3300025921 Bacteria 2692
51 Ga0207659_10065811 3300025926 Bacteria 2628
52 Ga0207700_10000449 3300025928 Bacteria 24162
53 Ga0207690_10068353 3300025932 Bacteria 2440
54 Ga0207665_10025621 3300025939 Bacteria 3892
55 Ga0207661_10023745 3300025944 Bacteria 4637
56 Ga0207703_10040169 3300026035 Bacteria 3743
57 Ga0207678_10127395 3300026067 Bacteria 2171
58 Ga0207702_10101959 3300026078 Bacteria 2535
59 Ga0207648_10188503 3300026089 Bacteria 1827
60 Ga0209971_1012299 3300027682 Bacteria 2024
61 Ga0209966_1001158 3300027695 Bacteria 4712
62 Ga0209974_10002259 3300027876 Bacteria 7006
63 Ga0207428_10002780 3300027907 Bacteria 17373
64 Ga0268266_10008041 3300028379 Bacteria 9425
65 Ga0268266_10013952 3300028379 Bacteria 6918
66 Ga0265337_1002888 3300028556 Bacteria 7665
67 Ga0265334_10025498 3300028573 Bacteria 2392
68 Ga0265338_10007815 3300028800 Bacteria 13148
69 Ga0265339_10001746 3300031249 Bacteria 16003
70 Ga0265314_10080223 3300031711 Bacteria 2155
71 Ga0373959_0000359 3300034820 Bacteria 9138
72 Ga0373947_0097502 3300035725 Bacteria 1843
73 Ga0395899_0034938 3300037312 Bacteria 3774
74 Ga0395900_0001281 3300037418 Bacteria 30694
75 Ga0395900_0017690 3300037418 Bacteria 7277
76 Ga0395900_0024215 3300037418 Bacteria 6215
77 Ga0395898_0001094 3300037466 Bacteria 41825
78 Ga0395905_0000017 3300037471 Bacteria 376619
79 Ga0395901_0015151 3300038443 Bacteria 7839
80 Ga0439448_0014094 3300042005 Bacteria 2408
81 Ga0466967_0139439 3300045976 Bacteria 2257
82 Ga0496109_0001609 3300048912 Bacteria 18843
83 Ga0496111_0029754 3300048914 Bacteria 3880
84 Ga0496112_0031340 3300048915 Bacteria 5156
85 Ga0501031_0007537 3300049568 Bacteria 7088
86 Ga0501032_0000196 3300049569 Bacteria 50261
87 Ga0501033_0003209 3300049570 Bacteria 13536
88 Ga0501034_0000097 3300049571 Bacteria 161027
89 Ga0501034_0001151 3300049571 Bacteria 36663
90 Ga0501036_0009212 3300049572 Bacteria 8116
91 Ga0501037_0001377 3300049573 Bacteria 17808
92 Ga0501038_0001622 3300049574 Bacteria 20925
93 Ga0501039_0054508 3300049575 Bacteria 3095
94 Ga0501043_0000409 3300049579 Bacteria 38657
95 Ga0501046_0000181 3300049580 Bacteria 64035
96 Ga0501047_0002426 3300049581 Bacteria 17808
97 Ga0501048_0003595 3300049582 Bacteria 11806
98 Ga0501067_0000145 3300049583 Bacteria 39277
99 Ga0501069_0003759 3300049585 Bacteria 7805
100 Ga0501070_0034721 3300049586 Bacteria 4215
101 Ga0501071_0100964 3300049587 Bacteria 2127
102 Ga0501072_0014140 3300049588 Bacteria 6115
103 Ga0501072_0151483 3300049588 Bacteria 1849
104 Ga0501073_0000027 3300049589 Bacteria 121860
105 Ga0501073_0021957 3300049589 Bacteria 4598
106 Ga0501074_0001347 3300049590 Bacteria 16291
107 Ga0501076_0086261 3300049592 Bacteria 2523
108 Ga0501077_0048171 3300049593 Bacteria 2707
109 Ga0501079_0011409 3300049741 Bacteria 6782
110 Ga0501080_0002621 3300049742 Bacteria 15752
111 Ga0501035_0001852 3300049822 Bacteria 21281
112 Ga0501044_0003498 3300049823 Bacteria 17680
113 nmdc:mga03683_14851_c1 3300050489 Bacteria 2892
114 nmdc:mga03683_2437_c1 3300050489 Bacteria 5778
115 nmdc:mga03683_64162_c1 3300050489 Bacteria 1558
116 nmdc:mga0yw44_77725_c1 3300050492 Bacteria 2074
117 nmdc:mga05p37_113083_c1 3300050507 Bacteria 3338
118 nmdc:mga05p37_747_c1 3300050507 Bacteria 36024
119 nmdc:mga09592_4203_c1 3300050508 Bacteria 11634
120 nmdc:mga0qj67_4445_c1 3300050509 Bacteria 10155
121 nmdc:mga08y16_2652_c1 3300050511 Bacteria 18389
122 nmdc:mga08y16_37725_c1 3300050511 Bacteria 5072
123 nmdc:mga0sz30_19953_c1 3300050516 Bacteria 2699
124 nmdc:mga0sz30_58077_c1 3300050516 Bacteria 1649
125 nmdc:mga0sz30_7906_c1 3300050516 Bacteria 4002
126 Ga0500616_0003429 3300053153 Bacteria 12124
127 Ga0501084_0003235 3300054114 Bacteria 13188
128 Ga0501082_0000008 3300060353 Bacteria 125977
129 Ga0501082_0005376 3300060353 Bacteria 11113

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300025939 Ga0207665_10025621 Ga0207665_100256215 401
2 3300037471 Ga0395905_0000017 Ga0395905_0000017_203512_205059 415
3 3300025926 Ga0207659_10065811 Ga0207659_100658112 421
4 3300050489 nmdc:mga03683_64162_c1 nmdc:mga03683_64162_c1_70_1527 428
5 3300050516 nmdc:mga0sz30_58077_c1 nmdc:mga0sz30_58077_c1_20_1477 428
6 3300005548 Ga0070665_100015157 Ga0070665_1000151572 431
7 3300028379 Ga0268266_10008041 Ga0268266_100080412 431
8 3300009147 Ga0114129_10128491 Ga0114129_101284913 434
9 3300050507 nmdc:mga05p37_113083_c1 nmdc:mga05p37_113083_c1_114_1646 434
10 3300005985 Ga0081539_10003370 Ga0081539_100033701 437
11 3300049587 Ga0501071_0100964 Ga0501071_0100964_358_1893 437
12 3300060353 Ga0501082_0000008 Ga0501082_0000008_76149_77687 437
13 3300006177 Ga0075362_10005543 Ga0075362_100055434 438
14 3300006186 Ga0075369_10003507 Ga0075369_100035076 438
15 3300050489 nmdc:mga03683_2437_c1 nmdc:mga03683_2437_c1_3695_5218 438
16 3300050516 nmdc:mga0sz30_7906_c1 nmdc:mga0sz30_7906_c1_2332_3855 438
17 3300006038 Ga0075365_10065688 Ga0075365_100656882 439
18 3300049568 Ga0501031_0007537 Ga0501031_0007537_786_2372 439
19 3300049569 Ga0501032_0000196 Ga0501032_0000196_1449_3035 439
20 3300049570 Ga0501033_0003209 Ga0501033_0003209_1400_2986 439
21 3300049571 Ga0501034_0001151 Ga0501034_0001151_1449_3035 439
22 3300049572 Ga0501036_0009212 Ga0501036_0009212_1449_3035 439
23 3300049573 Ga0501037_0001377 Ga0501037_0001377_14774_16360 439
24 3300049574 Ga0501038_0001622 Ga0501038_0001622_1287_2873 439
25 3300049579 Ga0501043_0000409 Ga0501043_0000409_35623_37209 439
26 3300049580 Ga0501046_0000181 Ga0501046_0000181_1449_3035 439
27 3300049581 Ga0501047_0002426 Ga0501047_0002426_1449_3035 439
28 3300049582 Ga0501048_0003595 Ga0501048_0003595_8783_10369 439
29 3300049583 Ga0501067_0000145 Ga0501067_0000145_1392_2978 439
30 3300049585 Ga0501069_0003759 Ga0501069_0003759_865_2451 439
31 3300049586 Ga0501070_0034721 Ga0501070_0034721_525_2111 439
32 3300049588 Ga0501072_0014140 Ga0501072_0014140_3687_5273 439
33 3300049589 Ga0501073_0000027 Ga0501073_0000027_2492_4078 439
34 3300049590 Ga0501074_0001347 Ga0501074_0001347_959_2530 439
35 3300049741 Ga0501079_0011409 Ga0501079_0011409_3170_4756 439
36 3300049742 Ga0501080_0002621 Ga0501080_0002621_1449_3035 439
37 3300049822 Ga0501035_0001852 Ga0501035_0001852_1449_3035 439
38 3300049823 Ga0501044_0003498 Ga0501044_0003498_14646_16232 439
39 3300054114 Ga0501084_0003235 Ga0501084_0003235_1827_3413 439
40 3300060353 Ga0501082_0005376 Ga0501082_0005376_8080_9666 439
41 3300027876 Ga0209974_10002259 Ga0209974_100022592 440
42 3300009551 Ga0105238_10001829 Ga0105238_100018293 442
43 3300025928 Ga0207700_10000449 Ga0207700_1000044920 442
44 3300050492 nmdc:mga0yw44_77725_c1 nmdc:mga0yw44_77725_c1_200_1735 443
45 3300005335 Ga0070666_10001820 Ga0070666_1000182015 444
46 3300005563 Ga0068855_100091357 Ga0068855_1000913573 444
47 3300026078 Ga0207702_10101959 Ga0207702_101019592 444
48 3300028379 Ga0268266_10013952 Ga0268266_100139525 446
49 3300037312 Ga0395899_0034938 Ga0395899_0034938_1193_2725 446
50 3300037418 Ga0395900_0024215 Ga0395900_0024215_519_2051 446
51 3300038443 Ga0395901_0015151 Ga0395901_0015151_3449_4981 446
52 iso_pu_bacteria 2894652903 2894656652 446
53 iso_pu_bacteria 2922425934 2922427227 446
54 3300005329 Ga0070683_100004584 Ga0070683_1000045843 448
55 3300005616 Ga0068852_100023348 Ga0068852_1000233484 448
56 3300025944 Ga0207661_10023745 Ga0207661_100237453 448
57 3300009094 Ga0111539_10021060 Ga0111539_100210605 449
58 3300014968 Ga0157379_10002550 Ga0157379_1000255012 449
59 3300028556 Ga0265337_1002888 Ga0265337_10028882 449
60 3300028573 Ga0265334_10025498 Ga0265334_100254982 449
61 3300028800 Ga0265338_10007815 Ga0265338_100078154 449
62 3300031711 Ga0265314_10080223 Ga0265314_100802231 449
63 3300050511 nmdc:mga08y16_37725_c1 nmdc:mga08y16_37725_c1_1252_2784 449
64 3300005467 Ga0070706_100040190 Ga0070706_1000401902 450
65 3300005471 Ga0070698_100045699 Ga0070698_1000456992 450
66 3300035725 Ga0373947_0097502 Ga0373947_0097502_276_1787 450
67 3300037418 Ga0395900_0001281 Ga0395900_0001281_17658_19190 450
68 3300005458 Ga0070681_10037758 Ga0070681_100377582 451
69 3300026035 Ga0207703_10040169 Ga0207703_100401693 451
70 3300026067 Ga0207678_10127395 Ga0207678_101273951 451
71 3300045976 Ga0466967_0139439 Ga0466967_0139439_612_2150 451
72 3300005339 Ga0070660_100075943 Ga0070660_1000759431 452
73 3300005366 Ga0070659_100092221 Ga0070659_1000922212 452
74 3300005844 Ga0068862_100032555 Ga0068862_1000325554 452
75 3300013104 Ga0157370_10016239 Ga0157370_100162394 452
76 3300025261 Ga0209233_1006207 Ga0209233_10062073 452
77 3300025932 Ga0207690_10068353 Ga0207690_100683532 452
78 3300031249 Ga0265339_10001746 Ga0265339_100017465 452
79 3300049571 Ga0501034_0000097 Ga0501034_0000097_32681_34201 452
80 3300005327 Ga0070658_10070938 Ga0070658_100709381 453
81 3300005329 Ga0070683_100037876 Ga0070683_1000378766 453
82 3300005535 Ga0070684_100044803 Ga0070684_1000448032 453
83 3300005937 Ga0081455_10006653 Ga0081455_100066534 453
84 3300006844 Ga0075428_100003147 Ga0075428_1000031475 453
85 3300006846 Ga0075430_100041586 Ga0075430_1000415862 453
86 3300006880 Ga0075429_100003855 Ga0075429_1000038555 453
87 3300009093 Ga0105240_10042536 Ga0105240_100425366 453
88 3300009094 Ga0111539_10002520 Ga0111539_1000252015 453
89 3300009147 Ga0114129_10003096 Ga0114129_100030969 453
90 3300009545 Ga0105237_10043512 Ga0105237_100435122 453
91 3300009551 Ga0105238_10006484 Ga0105238_100064843 453
92 3300027907 Ga0207428_10002780 Ga0207428_100027809 453
93 3300037418 Ga0395900_0017690 Ga0395900_0017690_4758_6320 453
94 3300037466 Ga0395898_0001094 Ga0395898_0001094_8231_9763 453
95 3300049575 Ga0501039_0054508 Ga0501039_0054508_1313_2854 453
96 3300049588 Ga0501072_0151483 Ga0501072_0151483_209_1750 453
97 3300049589 Ga0501073_0021957 Ga0501073_0021957_418_1956 453
98 3300049592 Ga0501076_0086261 Ga0501076_0086261_748_2289 453
99 3300050507 nmdc:mga05p37_747_c1 nmdc:mga05p37_747_c1_32994_34532 453
100 3300050508 nmdc:mga09592_4203_c1 nmdc:mga09592_4203_c1_9084_10622 453
101 3300050509 nmdc:mga0qj67_4445_c1 nmdc:mga0qj67_4445_c1_4513_6051 453
102 3300050511 nmdc:mga08y16_2652_c1 nmdc:mga08y16_2652_c1_9960_11498 453
103 3300005290 Ga0065712_10082958 Ga0065712_100829582 454
104 3300005344 Ga0070661_100110347 Ga0070661_1001103472 454
105 3300005459 Ga0068867_100135765 Ga0068867_1001357651 454
106 3300005536 Ga0070697_100181000 Ga0070697_1001810001 454
107 3300006177 Ga0075362_10001984 Ga0075362_100019842 454
108 3300006177 Ga0075362_10033689 Ga0075362_100336892 454
109 3300006852 Ga0075433_10028716 Ga0075433_100287163 454
110 3300009101 Ga0105247_10021782 Ga0105247_100217822 454
111 3300009545 Ga0105237_10081710 Ga0105237_100817103 454
112 3300014325 Ga0163163_10069661 Ga0163163_100696612 454
113 3300014325 Ga0163163_10088358 Ga0163163_100883584 454
114 3300025315 Ga0207697_10004861 Ga0207697_100048613 454
115 3300025903 Ga0207680_10018219 Ga0207680_100182193 454
116 3300025916 Ga0207663_10077136 Ga0207663_100771361 454
117 3300025919 Ga0207657_10003799 Ga0207657_1000379910 454
118 3300025920 Ga0207649_10073161 Ga0207649_100731612 454
119 3300025921 Ga0207652_10090260 Ga0207652_100902602 454
120 3300026089 Ga0207648_10188503 Ga0207648_101885031 454
121 3300027682 Ga0209971_1012299 Ga0209971_10122991 454
122 3300027695 Ga0209966_1001158 Ga0209966_10011583 454
123 3300034820 Ga0373959_0000359 Ga0373959_0000359_5061_6602 454
124 3300042005 Ga0439448_0014094 Ga0439448_0014094_61_1587 454
125 3300048912 Ga0496109_0001609 Ga0496109_0001609_15334_16860 454
126 3300048914 Ga0496111_0029754 Ga0496111_0029754_1427_2953 454
127 3300048915 Ga0496112_0031340 Ga0496112_0031340_646_2172 454
128 3300049593 Ga0501077_0048171 Ga0501077_0048171_383_1909 454
129 3300050489 nmdc:mga03683_14851_c1 nmdc:mga03683_14851_c1_376_1971 454
130 3300050516 nmdc:mga0sz30_19953_c1 nmdc:mga0sz30_19953_c1_582_2177 454
131 3300053153 Ga0500616_0003429 Ga0500616_0003429_3393_4985 454

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00070

Pyr_redox

Pyridine nucleotide-disulphide oxidoreductase

292

369

0.96

PF00355

Rieske

Rieske [2Fe-2S] domain

37

119

0.94

PF07992

Pyr_redox_2

Pyridine nucleotide-disulphide oxidoreductase

149

443

0.94

PF13806

Rieske_2

Rieske-like [2Fe-2S] domain

33

130

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
3gce-assembly1.cif.gz_A ferredoxin of carbazole 1,9a-dioxygenase from nocardioides aromaticivorans ic177 0.964 16 109
2qpz-assembly1.cif.gz_A naphthalene 1,2-dioxygenase rieske ferredoxin 0.9627 16 109
4emj-assembly1.cif.gz_B complex between the reductase and ferredoxin components of toluene dioxygenase 0.9554 17 115
5bok-assembly1.cif.gz_A ferredoxin component of 3-nitrotoluene dioxygenase from diaphorobacter sp. strain ds2 0.9537 16 110
1fqt-assembly1.cif.gz_B crystal structure of the rieske-type ferredoxin associated with biphenyl dioxygenase 0.9466 16 116
ID Description Score Start End Superfamily
af_A0A1D6EF23_1_151_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9781 233 266 3.50.50.60
af_A0A0R0JZ96_141_231_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9654 207 292 3.50.50.60
3gceA00 Mainly Beta;3-layer Sandwich;Rieske Iron-sulfur Protein;Rieske [2Fe-2S] iron-sulphur domain 0.964 16 109 2.102.10.10
af_E7F3F1_457_541_3.30.390.30 Alpha Beta;2-Layer Sandwich;Enolase-like; domain 1;FAD/NAD-linked reductase, C-terminal dimerisation domain 0.9629 386 434 3.30.390.30
af_E7F3F1_17_122_2.102.10.10 Mainly Beta;3-layer Sandwich;Rieske Iron-sulfur Protein;Rieske [2Fe-2S] iron-sulphur domain 0.9623 16 112 2.102.10.10
ID Description Score Start End GO Terms
AF-A0A3N9NIA0-F1-model_v4 Non-heme iron oxygenase ferredoxin subunit 0.9814 27 110 GO:0046872
GO:0051537
AF-N1MLV0-F1-model_v4 Probable ferredoxin subunit of a ring-hydroxylating dioxygenase oxidoreductase protein 0.9702 16 109 GO:0046872
GO:0051213
GO:0051537
AF-A0A2M7WJ59-F1-model_v4 Rieske domain-containing protein 0.9692 16 111 GO:0046872
GO:0051537
AF-L0GVR4-F1-model_v4 Ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase 0.9672 16 111 GO:0046872
GO:0051213
GO:0051537
AF-A0A177R154-F1-model_v4 deleted 0.965 18 109

Feature Viewer

pLDDT pTM Quality
78.36 0.77 High
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Predicted Structure (AlphaFold2)

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