F150109

General Info

Members Datasets Scaffolds Average Seq Length
131 100 127 930

Family's Representative Sequence

Representative Sequence 3300042876|Ga0451577_0005158|Ga0451577_0005158_4781_7816
Length 996
Sequence VIIESDGHQITGVRGDPDHPANFGRLCTKGSTLHLTASQAITQQTRLLQPLQRLQRHGQTQPISWDGALDWAAQRFAHTITQHGSDAVGFYISGQLLTEDYYVFNKLAKGLIGTNNIDSNSRLCMSSAVVGYKQTLGMDAPPCCYDDVNHASTIFIVGANPAYAHPVLFRRIEDARRANPQLKIIVADPRRTDTADMADLYLPIQPGTDVMLFNGMLHLMLWEGWVDAAFIAAHTHGFEALKASVRGCTPELVAQICGISAEALLQAARLFAGVADQNTSKVIAVSLGESMATGQKATLSLYCQGLNQSSSGSAKNTALINLHLATGQIGKPGAGPFSLTGQPNAMGGREVGGMANLLSAHRDLANPVHRAEVAALWGVPSVPDKPGKTAVEMFQAAADGEIKALWIACTNPAQSLPDQATVRRALERAEFVVVQEAFATTATCRFADLLLPATTWGEKEGTVTNSERRISRVRAAVPPPNVVADSLVPLGSLDGEAFCSVSPARDAGSSLTCAERPTAQTPGYHGGSPRHDWAIAVDFAQRLECALGHVGPSLFPYDSPETIWNEHRESTRGRDLDITGLSYAMLEQSPQQWPLKEGDTVGKTRLYEDGLFPTPDGKARFVVSNYQPVAELRSARYPFSLTTGRLRDQWHGMSRTGTLGRLFGHAAEPSITLHPQDMARLQLQAGDLVTVSNPRGAILVPVVASAEVALNQAFMAMHWGEEFLSGRSATGERLAGVNTLTTPVYCPDSKQPEFKHTAVKLQKVQLPWNLLAMAWLPADAVLTARTELQALMGDCAFASCVLFSHGQNQAAAADTPGGTPRLAATPERCGLLFRAAHPTPLPTTLLEKMEAVLQLHGGDILRYADPKRGQRRTIRLREARGQTLLEGFLLAGDTRAQGWIITLLKESLPAQAYGRTLLLPGATAPLPVVSRGAPVCACFNVTDLAIQSHLQTCTGEPGERLLSLQSALKCGTNCGSCAPQLQRMVRQTAQPQSASL

Samples

Sample ID Description Type Environment
1 2585428057 Methylibium sp. YR605 Isolate Rhizosphere
2 2585428058 Methylibium sp. CF468 Isolate Rhizosphere
3 2643221603 Noviherbaspirillum sp. Root189 Isolate Unclassified
4 2939631187 Ottowia thiooxydans 2709 Isolate Rhizosphere
5 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
6 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
7 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
8 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
9 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
10 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
11 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
12 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
13 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
14 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
15 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
16 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
17 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
18 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
19 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
20 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
21 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
22 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
23 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
24 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
25 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
26 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
27 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
28 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
29 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
30 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
31 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
32 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
33 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
55 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
56 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
57 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
58 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
59 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
60 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
61 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
62 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
63 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
64 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
65 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
66 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
67 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
68 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
69 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
70 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
71 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
72 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
73 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
74 3300042115 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_080116_2642 Metagenome Rhizosphere
75 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
76 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
77 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
78 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
79 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
80 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
81 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
82 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
83 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
84 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
85 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
86 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
87 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
88 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
89 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
90 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
91 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
92 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
93 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
94 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
95 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
96 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
97 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
98 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
99 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
100 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.95
Metatranscriptomes 0
Isolates 3.05

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.58
Nodule 0
Rhizoplane 1.53
Rhizosphere 80.92
Stem 0
Stem Tuber 0
Unclassified 12.98

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0068869_100039842 3300005334 Bacteria 3357
2 Ga0070660_100000635 3300005339 Bacteria 23370
3 Ga0070668_100001429 3300005347 Bacteria 17231
4 Ga0070668_100020262 3300005347 Bacteria 5018
5 Ga0070669_100001645 3300005353 Bacteria 16197
6 Ga0070673_100020182 3300005364 Bacteria 4802
7 Ga0068867_100003382 3300005459 Bacteria 11223
8 Ga0068867_100005702 3300005459 Bacteria 8826
9 Ga0070706_100051145 3300005467 Bacteria 3813
10 Ga0070672_100001579 3300005543 Bacteria 14113
11 Ga0068852_100006218 3300005616 Bacteria 8608
12 Ga0068864_100008408 3300005618 Bacteria 8514
13 Ga0068864_100019258 3300005618 Bacteria 5706
14 Ga0068861_100002421 3300005719 Bacteria 12155
15 Ga0068861_100002818 3300005719 Bacteria 11427
16 Ga0068861_100004659 3300005719 Bacteria 9210
17 Ga0068870_10016103 3300005840 Bacteria 3564
18 Ga0068863_100009034 3300005841 Bacteria 9733
19 Ga0068858_100000712 3300005842 Bacteria 34734
20 Ga0068860_100000216 3300005843 Bacteria 90423
21 Ga0068860_100009933 3300005843 Bacteria 9432
22 Ga0068862_100003063 3300005844 Bacteria 14566
23 Ga0075365_10013562 3300006038 Bacteria 4880
24 Ga0075431_100104435 3300006847 Bacteria 2924
25 Ga0075429_100003892 3300006880 Bacteria 12750
26 Ga0075429_100060452 3300006880 Bacteria 3300
27 Ga0068865_100034526 3300006881 Bacteria 3394
28 Ga0105240_10024661 3300009093 Bacteria 7923
29 Ga0105245_10047420 3300009098 Bacteria 3841
30 Ga0105249_10001620 3300009553 Bacteria 19709
31 Ga0105249_10006595 3300009553 Bacteria 10100
32 Ga0105249_10033988 3300009553 Bacteria 4618
33 Ga0157378_10001232 3300013297 Bacteria 23149
34 Ga0163162_10007041 3300013306 Bacteria 10903
35 Ga0157375_10065420 3300013308 Bacteria 3625
36 Ga0157379_10006671 3300014968 Bacteria 9967
37 Ga0209051_1009980 3300025303 Bacteria 4838
38 Ga0207645_10005721 3300025907 Bacteria 8973
39 Ga0207684_10044931 3300025910 Bacteria 3747
40 Ga0207681_10000413 3300025923 Bacteria 29801
41 Ga0207659_10003022 3300025926 Bacteria 10033
42 Ga0207690_10002387 3300025932 Bacteria 11369
43 Ga0207706_10006291 3300025933 Bacteria 11031
44 Ga0207709_10014828 3300025935 Bacteria 4310
45 Ga0207669_10001773 3300025937 Bacteria 9156
46 Ga0207691_10009526 3300025940 Bacteria 9325
47 Ga0207711_10026830 3300025941 Bacteria 4835
48 Ga0207689_10009941 3300025942 Bacteria 8205
49 Ga0207679_10007543 3300025945 Bacteria 6904
50 Ga0207668_10017624 3300025972 Bacteria 4477
51 Ga0207658_10000686 3300025986 Bacteria 29492
52 Ga0207703_10003363 3300026035 Bacteria 13439
53 Ga0207641_10003544 3300026088 Bacteria 13814
54 Ga0207648_10005985 3300026089 Bacteria 12162
55 Ga0207648_10019227 3300026089 Bacteria 6165
56 Ga0207675_100004353 3300026118 Bacteria 13687
57 Ga0207675_100004485 3300026118 Bacteria 13489
58 Ga0207675_100005053 3300026118 Bacteria 12697
59 Ga0207675_100008925 3300026118 Bacteria 9405
60 Ga0207698_10004333 3300026142 Bacteria 8639
61 Ga0268265_10007848 3300028380 Bacteria 7203
62 Ga0268264_10000893 3300028381 Bacteria 31376
63 Ga0268264_10020213 3300028381 Bacteria 5442
64 Ga0307517_10000805 3300028786 Bacteria 53822
65 Ga0307515_10000020 3300028794 Bacteria 411735
66 Ga0307515_10040097 3300028794 Bacteria 7417
67 Ga0307511_10003268 3300030521 Bacteria 16658
68 Ga0265328_10000096 3300031239 Bacteria 42948
69 Ga0265331_10010669 3300031250 Bacteria 5066
70 Ga0265327_10001928 3300031251 Bacteria 23964
71 Ga0307513_10017205 3300031456 Bacteria 8676
72 Ga0307509_10001851 3300031507 Bacteria 34975
73 Ga0307508_10024291 3300031616 Bacteria 5500
74 Ga0307516_10021169 3300031730 Bacteria 6702
75 Ga0307409_100001674 3300031995 Bacteria 11149
76 Ga0307415_100013003 3300032126 Bacteria 4840
77 Ga0307510_10001502 3300033180 Bacteria 25726
78 Ga0307510_10025099 3300033180 Bacteria 6879
79 Ga0373937_0007924 3300036401 Bacteria 9207
80 Ga0373925_0004378 3300037068 Bacteria 10673
81 Ga0395899_0001136 3300037312 Bacteria 23550
82 Ga0395899_0002455 3300037312 Bacteria 15048
83 Ga0395899_0015705 3300037312 Bacteria 5774
84 Ga0395900_0007018 3300037418 Bacteria 11665
85 Ga0395900_0023855 3300037418 Bacteria 6259
86 Ga0395905_0001136 3300037471 Bacteria 33276
87 Ga0395905_0025742 3300037471 Bacteria 5547
88 Ga0395905_0092286 3300037471 Bacteria 2839
89 Ga0395901_0042438 3300038443 Bacteria 4715
90 Ga0439431_0005309 3300041997 Bacteria 2843
91 Ga0450911_000326 3300042115 Bacteria 17081
92 Ga0439435_0000605 3300042436 Bacteria 5844
93 Ga0451577_0003346 3300042876 Bacteria 17953
94 Ga0451577_0005158 3300042876 Bacteria 13438
95 Ga0451577_0020875 3300042876 Bacteria 6004
96 Ga0466969_0009323 3300044656 Bacteria 5202
97 Ga0466972_0000106 3300044658 Bacteria 72246
98 Ga0466972_0001693 3300044658 Bacteria 10787
99 Ga0466972_0008831 3300044658 Bacteria 5056
100 Ga0466965_0003769 3300044683 Bacteria 6689
101 Ga0466966_0004662 3300044684 Bacteria 9028
102 Ga0466961_0000943 3300044693 Bacteria 18004
103 Ga0453684_0005767 3300044712 Bacteria 24180
104 Ga0466957_0002937 3300044842 Bacteria 9237
105 Ga0466957_0052836 3300044842 Bacteria 2475
106 Ga0466959_0006575 3300045049 Bacteria 8069
107 Ga0466959_0031304 3300045049 Bacteria 3937
108 Ga0451576_0000394 3300045051 Bacteria 101802
109 Ga0451576_0004905 3300045051 Bacteria 17080
110 Ga0451576_0007201 3300045051 Bacteria 13406
111 Ga0495592_0000028 3300046454 Bacteria 132590
112 Ga0495643_0011538 3300046522 Bacteria 5375
113 Ga0495661_0000990 3300046665 Bacteria 25658
114 Ga0495687_010646 3300047443 Bacteria 5027
115 Ga0496102_0017352 3300048905 Bacteria 6305
116 Ga0496114_0008290 3300048917 Bacteria 8234
117 Ga0496121_0027509 3300048924 Bacteria 5320
118 Ga0496124_0000317 3300048927 Bacteria 89188
119 Ga0496125_0014868 3300048928 Bacteria 7558
120 Ga0496125_0031939 3300048928 Bacteria 4684
121 Ga0496126_0053572 3300048929 Bacteria 3660
122 Ga0496126_0085814 3300048929 Bacteria 2775
123 Ga0501280_000116 3300049776 Bacteria 21015
124 Ga0500644_0001817 3300053088 Bacteria 5515
125 Ga0500559_0000191 3300053136 Bacteria 49243
126 Ga0500622_0000002 3300053156 Bacteria 646442
127 Ga0500636_0029572 3300053177 Bacteria 3237

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300044842 Ga0466957_0052836 Ga0466957_0052836_87_2462 691
2 3300037471 Ga0395905_0092286 Ga0395905_0092286_33_2507 721
3 3300041997 Ga0439431_0005309 Ga0439431_0005309_252_2795 732
4 3300048929 Ga0496126_0085814 Ga0496126_0085814_182_2758 742
5 3300044656 Ga0466969_0009323 Ga0466969_0009323_155_2995 779
6 3300044683 Ga0466965_0003769 Ga0466965_0003769_2452_5292 780
7 3300044693 Ga0466961_0000943 Ga0466961_0000943_128_2968 780
8 3300044842 Ga0466957_0002937 Ga0466957_0002937_6297_9137 780
9 3300045049 Ga0466959_0031304 Ga0466959_0031304_964_3804 780
10 3300009553 Ga0105249_10006595 Ga0105249_100065954 781
11 3300031250 Ga0265331_10010669 Ga0265331_100106694 786
12 3300045051 Ga0451576_0007201 Ga0451576_0007201_6169_8865 786
13 3300005719 Ga0068861_100002421 Ga0068861_1000024213 787
14 3300026118 Ga0207675_100004353 Ga0207675_1000043534 787
15 3300044712 Ga0453684_0005767 Ga0453684_0005767_14762_17434 787
16 3300009098 Ga0105245_10047420 Ga0105245_100474202 789
17 3300014968 Ga0157379_10006671 Ga0157379_100066717 789
18 3300042876 Ga0451577_0005158 Ga0451577_0005158_4781_7816 789
19 3300044684 Ga0466966_0004662 Ga0466966_0004662_5468_8308 789
20 3300009093 Ga0105240_10024661 Ga0105240_100246616 792
21 3300005618 Ga0068864_100008408 Ga0068864_1000084085 794
22 3300031730 Ga0307516_10021169 Ga0307516_100211693 796
23 3300026118 Ga0207675_100008925 Ga0207675_1000089256 798
24 3300028794 Ga0307515_10000020 Ga0307515_10000020316 798
25 3300031239 Ga0265328_10000096 Ga0265328_1000009617 798
26 3300025940 Ga0207691_10009526 Ga0207691_100095267 799
27 iso_pu_bacteria 2939631187 2939632213 800
28 iso_pu_bacteria 2585428058 2587733220 802
29 3300006880 Ga0075429_100003892 Ga0075429_1000038922 803
30 3300005347 Ga0070668_100020262 Ga0070668_1000202623 804
31 3300005459 Ga0068867_100005702 Ga0068867_1000057025 804
32 3300005719 Ga0068861_100004659 Ga0068861_1000046593 804
33 3300005843 Ga0068860_100009933 Ga0068860_1000099336 804
34 3300005844 Ga0068862_100003063 Ga0068862_1000030635 804
35 3300006881 Ga0068865_100034526 Ga0068865_1000345261 804
36 3300009553 Ga0105249_10033988 Ga0105249_100339884 804
37 3300013297 Ga0157378_10001232 Ga0157378_1000123218 804
38 3300013306 Ga0163162_10007041 Ga0163162_100070415 804
39 3300013308 Ga0157375_10065420 Ga0157375_100654202 804
40 3300026089 Ga0207648_10005985 Ga0207648_100059855 804
41 3300026118 Ga0207675_100005053 Ga0207675_1000050538 804
42 3300028381 Ga0268264_10020213 Ga0268264_100202132 804
43 3300033180 Ga0307510_10001502 Ga0307510_100015024 804
44 3300037068 Ga0373925_0004378 Ga0373925_0004378_594_3407 804
45 3300042115 Ga0450911_000326 Ga0450911_000326_12651_15428 804
46 3300042876 Ga0451577_0020875 Ga0451577_0020875_1976_4699 804
47 3300053088 Ga0500644_0001817 Ga0500644_0001817_433_3216 804
48 3300053136 Ga0500559_0000191 Ga0500559_0000191_2691_5474 804
49 3300053177 Ga0500636_0029572 Ga0500636_0029572_121_2904 804
50 3300005347 Ga0070668_100001429 Ga0070668_1000014298 805
51 3300005353 Ga0070669_100001645 Ga0070669_1000016457 805
52 3300005467 Ga0070706_100051145 Ga0070706_1000511453 805
53 3300005543 Ga0070672_100001579 Ga0070672_1000015796 805
54 3300005616 Ga0068852_100006218 Ga0068852_1000062186 805
55 3300005618 Ga0068864_100019258 Ga0068864_1000192583 805
56 3300005719 Ga0068861_100002818 Ga0068861_1000028183 805
57 3300005841 Ga0068863_100009034 Ga0068863_1000090343 805
58 3300005842 Ga0068858_100000712 Ga0068858_1000007126 805
59 3300005843 Ga0068860_100000216 Ga0068860_10000021613 805
60 3300025907 Ga0207645_10005721 Ga0207645_100057217 805
61 3300025910 Ga0207684_10044931 Ga0207684_100449313 805
62 3300025923 Ga0207681_10000413 Ga0207681_1000041315 805
63 3300025926 Ga0207659_10003022 Ga0207659_100030223 805
64 3300025933 Ga0207706_10006291 Ga0207706_100062914 805
65 3300025935 Ga0207709_10014828 Ga0207709_100148283 805
66 3300025937 Ga0207669_10001773 Ga0207669_100017735 805
67 3300025941 Ga0207711_10026830 Ga0207711_100268302 805
68 3300025972 Ga0207668_10017624 Ga0207668_100176243 805
69 3300025986 Ga0207658_10000686 Ga0207658_1000068622 805
70 3300026035 Ga0207703_10003363 Ga0207703_100033637 805
71 3300026088 Ga0207641_10003544 Ga0207641_100035447 805
72 3300026118 Ga0207675_100004485 Ga0207675_1000044857 805
73 3300026142 Ga0207698_10004333 Ga0207698_100043333 805
74 3300028380 Ga0268265_10007848 Ga0268265_100078484 805
75 3300028381 Ga0268264_10000893 Ga0268264_100008933 805
76 3300044658 Ga0466972_0001693 Ga0466972_0001693_7135_9930 805
77 3300045051 Ga0451576_0000394 Ga0451576_0000394_86587_89319 805
78 3300028786 Ga0307517_10000805 Ga0307517_1000080542 806
79 3300028794 Ga0307515_10040097 Ga0307515_100400974 806
80 3300031456 Ga0307513_10017205 Ga0307513_100172054 806
81 3300031507 Ga0307509_10001851 Ga0307509_100018518 806
82 3300031616 Ga0307508_10024291 Ga0307508_100242912 806
83 3300031995 Ga0307409_100001674 Ga0307409_1000016743 806
84 3300032126 Ga0307415_100013003 Ga0307415_1000130033 806
85 3300033180 Ga0307510_10025099 Ga0307510_100250994 806
86 3300037312 Ga0395899_0001136 Ga0395899_0001136_6069_8840 806
87 3300037312 Ga0395899_0002455 Ga0395899_0002455_6225_8987 806
88 3300037418 Ga0395900_0023855 Ga0395900_0023855_500_3262 806
89 3300038443 Ga0395901_0042438 Ga0395901_0042438_593_3355 806
90 3300046454 Ga0495592_0000028 Ga0495592_0000028_30292_33081 806
91 3300048924 Ga0496121_0027509 Ga0496121_0027509_923_3739 806
92 3300048927 Ga0496124_0000317 Ga0496124_0000317_1795_4608 806
93 3300048928 Ga0496125_0014868 Ga0496125_0014868_1068_3881 806
94 3300049776 Ga0501280_000116 Ga0501280_000116_3564_6293 806
95 3300048928 Ga0496125_0031939 Ga0496125_0031939_870_3656 807
96 3300053156 Ga0500622_0000002 Ga0500622_0000002_109401_112130 807
97 iso_pu_bacteria 2585428057 2587726742 807
98 3300044658 Ga0466972_0000106 Ga0466972_0000106_19284_22043 808
99 3300044658 Ga0466972_0008831 Ga0466972_0008831_219_2978 808
100 3300005339 Ga0070660_100000635 Ga0070660_1000006353 809
101 3300005364 Ga0070673_100020182 Ga0070673_1000201823 809
102 3300005459 Ga0068867_100003382 Ga0068867_1000033824 809
103 3300005840 Ga0068870_10016103 Ga0068870_100161032 809
104 3300025945 Ga0207679_10007543 Ga0207679_100075433 809
105 3300026089 Ga0207648_10019227 Ga0207648_100192273 809
106 3300031251 Ga0265327_10001928 Ga0265327_100019289 809
107 3300037312 Ga0395899_0015705 Ga0395899_0015705_1837_4602 809
108 3300037418 Ga0395900_0007018 Ga0395900_0007018_6472_9237 809
109 3300037471 Ga0395905_0001136 Ga0395905_0001136_30379_33159 809
110 3300037471 Ga0395905_0025742 Ga0395905_0025742_1188_3953 809
111 3300025932 Ga0207690_10002387 Ga0207690_100023871 810
112 3300045051 Ga0451576_0004905 Ga0451576_0004905_9499_12597 810
113 3300042876 Ga0451577_0003346 Ga0451577_0003346_13159_15978 811
114 3300045049 Ga0466959_0006575 Ga0466959_0006575_4996_7773 813
115 3300030521 Ga0307511_10003268 Ga0307511_100032684 814
116 3300025303 Ga0209051_1009980 Ga0209051_10099802 816
117 3300046522 Ga0495643_0011538 Ga0495643_0011538_1531_4329 818
118 3300046665 Ga0495661_0000990 Ga0495661_0000990_9711_12509 818
119 3300047443 Ga0495687_010646 Ga0495687_010646_1355_4159 820
120 3300048905 Ga0496102_0017352 Ga0496102_0017352_3414_6224 823
121 3300006038 Ga0075365_10013562 Ga0075365_100135623 826
122 3300048917 Ga0496114_0008290 Ga0496114_0008290_2717_5536 826
123 3300048929 Ga0496126_0053572 Ga0496126_0053572_154_2973 826
124 iso_pu_bacteria 2643221603 2644027872 836
125 3300006847 Ga0075431_100104435 Ga0075431_1001044352 897
126 3300006880 Ga0075429_100060452 Ga0075429_1000604522 897
127 3300042436 Ga0439435_0000605 Ga0439435_0000605_1464_4205 897
128 3300036401 Ga0373937_0007924 Ga0373937_0007924_1639_4419 904
129 3300009553 Ga0105249_10001620 Ga0105249_100016207 908
130 3300005334 Ga0068869_100039842 Ga0068869_1000398422 909
131 3300025942 Ga0207689_10009941 Ga0207689_100099415 909

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01568

Molydop_binding

Molydopterin dinucleotide binding domain

639

758

0.98

PF00384

Molybdopterin

Molybdopterin oxidoreductase

46

482

0.93

PF04879

Molybdop_Fe4S4

Molybdopterin oxidoreductase Fe4S4 domain

1

39

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
4aiv-assembly1.cif.gz_A crystal structure of putative nadh-dependent nitrite reductase small subunit from mycobacterium tuberculosis 0.9681 1 100
3c0d-assembly3.cif.gz_C crystal structure of the putative nitrite reductase nadph (small subunit) oxidoreductase protein q87hb1. northeast structural genomics consortium target vpr162 0.9482 1 101
2jiq-assembly1.cif.gz_A a new catalytic mechanism of periplasmic nitrate reductase from desulfovibrio desulfuricans atcc 27774 from crystallographic and epr data and based on detailed analysis of the sixth ligand 0.9439 101 779
2nap-assembly1.cif.gz_A dissimilatory nitrate reductase (nap) from desulfovibrio desulfuricans 0.9374 101 779
7bkb-assembly1.cif.gz_D formate dehydrogenase - heterodisulfide reductase - formylmethanofuran dehydrogenase complex from methanospirillum hungatei (hexameric, composite structure) 0.9314 101 653
ID Description Score Start End Superfamily
4aivA00 Mainly Beta;3-layer Sandwich;Rieske Iron-sulfur Protein;Rieske [2Fe-2S] iron-sulphur domain 0.9681 1 100 2.102.10.10
af_P0A9I8_1_108_2.102.10.10 Mainly Beta;3-layer Sandwich;Rieske Iron-sulfur Protein;Rieske [2Fe-2S] iron-sulphur domain 0.9616 1 100 2.102.10.10
2iv2X03 Alpha Beta;3-Layer(aba) Sandwich;Dimethylsulfoxide Reductase; domain 2;Dimethylsulfoxide Reductase, domain 2 0.9447 239 412 3.40.228.10
3c0dC00 Mainly Beta;3-layer Sandwich;Rieske Iron-sulfur Protein;Rieske [2Fe-2S] iron-sulphur domain 0.932 1 101 2.102.10.10
2v45A03 Alpha Beta;3-Layer(aba) Sandwich;Dimethylsulfoxide Reductase; domain 2;Dimethylsulfoxide Reductase, domain 2 0.9283 231 414 3.40.228.10
ID Description Score Start End GO Terms
AF-A0A2A5HVC5-F1-model_v4 Nitrite reductase (NAD(P)H) small subunit 0.9906 1 100 GO:0042128
GO:0046872
GO:0051537
AF-A0A7W7S2P5-F1-model_v4 Nitrite reductase (NADH) small subunit (EC 1.7.1.15) 0.9891 1 101 GO:0042128
GO:0046872
GO:0051537
GO:0106316
AF-A0A2N5JU59-F1-model_v4 deleted 0.9859 1 100
AF-A0A7W9IBT8-F1-model_v4 Nitrite reductase (NADH) small subunit (EC 1.7.1.15) 0.9855 1 100 GO:0042128
GO:0046872
GO:0051537
GO:0106316
AF-A0A355V7U5-F1-model_v4 Nitrite reductase (NAD(P)H) small subunit 0.9851 1 100 GO:0042128
GO:0046872
GO:0051537

Feature Viewer

pLDDT pTM Quality
86.13 0.87 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map