F153102

General Info

Members Datasets Scaffolds Average Seq Length
132 82 264 484

Family's Representative Sequence

Representative Sequence 3300026089|Ga0207648_10119380|Ga0207648_101193802
Length 520
Sequence MKKIMLLLFLLLNITLRSFSQTETVPSFIKDSLDTYVNRALTEWKIPGVSVCVVKNGKVVVMKGYGVRELNSPDKVSQLLGTAYPAGSYVAFAESLSDNVSDKGVGGTDKTIEDPYFFRDVTDDQQDSPEWYWAACYSAVAAANQALEACKNASDPASYSSQQGEALLSRAYAHFMLVTFFSKIYDPATAATDEGIPYVTEPEKIVFKNYERKTVAYVYDMIEKDLIEGLPLLDDKRYSVPKYHFTKAAANAFAARFYLFKRDYAKVVDYANQVFSSGNITALLRPWNTTYLTYTPAEMFSIYAKATEPANLLLAETSSLWGRNYFTNRYGFTSSKRDEILEANVTGGDWAFRNQLYTAGTENYLIPKINEYFVRSSVNATIGIPYVMVPLFTAEEVLFNRAEANDWLGNTTSALADLNTYASTRIVNYSPSTHAITASKINSFYGTTNLQAGILLTILDFKRAEFVQEGMRWFDILRYGIPVTHYTSAGEIFQLTATDLRRVLQIPASAKLAGIDQNPR

Samples

Sample ID Description Type Environment
1 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
2 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
3 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
4 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
5 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
6 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
7 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
8 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
9 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
10 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
11 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
12 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
13 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
14 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
15 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
16 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
17 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
18 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
19 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
20 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
21 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
22 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
23 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
24 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
25 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
26 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
27 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
28 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
29 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
30 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
31 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
32 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
33 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
34 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
35 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
36 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
43 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
44 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
45 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
46 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
47 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
48 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
49 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
50 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
51 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
52 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
53 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
54 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
55 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
56 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
57 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
58 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
59 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
60 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
61 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
62 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
63 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
64 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
65 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
66 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
67 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
68 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
69 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
70 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
71 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
72 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
73 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
74 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
75 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
76 2738541278 Niastella sp. CF465 Isolate Unclassified
77 2738541283 Pedobacter sp. OK701 Isolate Unclassified
78 2840677318 Chitinophaga alhagiae T22 Isolate Unclassified
79 2896085136 Chitinophaga alhagiae T22 Isolate Unclassified
80 2896109856 Chitinophaga sp. SYP-B3965 Isolate Rhizosphere
81 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
82 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 91.67
Metatranscriptomes 0
Isolates 8.33

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 25
Nodule 0
Rhizoplane 0
Rhizosphere 51.52
Stem 0
Stem Tuber 0
Unclassified 3.79

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207648_10119380 3300026089 Bacteria 2318
2 JGI24739J22299_10000561 3300001989 Bacteria 13365
3 JGI24739J22299_10004520 3300001989 Bacteria 5320
4 JGI25154J39366_1000005 3300002738 Bacteria 345115
5 rootH2_10155869 3300003320 Bacteria 4270
6 rootL2_10055869 3300003322 Bacteria 3635
7 rootL2_10058844 3300003322 Bacteria 4284
8 rootL2_10058845 3300003322 Bacteria 2945
9 rootH1_10000662 3300003323 Bacteria 213765
10 rootH1_10010378 3300003323 Bacteria 33865
11 rootH1_10021824 3300003323 Unclassified 4024
12 JGI25160J50197_1012040 3300003354 Unclassified 3030
13 Ga0055526_1018549 3300003771 Bacteria 2591
14 Ga0055528_1000239 3300003790 Bacteria 46037
15 Ga0055530_10001812 3300003791 Bacteria 14798
16 Ga0065165_1000657 3300005262 Bacteria 49860
17 Ga0068869_100141837 3300005334 Bacteria 1856
18 Ga0070675_100127871 3300005354 Bacteria 2163
19 Ga0070698_100051002 3300005471 Bacteria 4216
20 Ga0068856_100004133 3300005614 Bacteria 14504
21 Ga0068856_100022385 3300005614 Bacteria 6143
22 Ga0075366_10017483 3300006195 Bacteria 4127
23 Ga0097621_100048165 3300006237 Bacteria 3456
24 Ga0114129_10010212 3300009147 Bacteria 13386
25 Ga0114129_10014200 3300009147 Bacteria 11348
26 Ga0114129_10032770 3300009147 Bacteria 7342
27 Ga0105241_10019516 3300009174 Bacteria 4999
28 Ga0105241_10059917 3300009174 Bacteria 2928
29 Ga0105237_10000374 3300009545 Bacteria 63655
30 Ga0105249_10075782 3300009553 Unclassified 3116
31 Ga0105239_10001450 3300010375 Bacteria 31601
32 Ga0105239_10001680 3300010375 Bacteria 29168
33 Ga0105239_10005014 3300010375 Bacteria 15634
34 Ga0157373_10158012 3300013100 Bacteria 1595
35 Ga0157370_10001374 3300013104 Bacteria 30122
36 Ga0182008_10000151 3300014497 Bacteria 54331
37 Ga0182006_1000769 3300015261 Bacteria 21837
38 Ga0163161_10108171 3300017792 Bacteria 2076
39 Ga0209646_1000003 3300025246 Bacteria 1160860
40 Ga0209646_1000017 3300025246 Bacteria 488265
41 Ga0209646_1002283 3300025246 Bacteria 4378
42 Ga0209646_1003148 3300025246 Bacteria 3335
43 Ga0209026_1000182 3300025250 Bacteria 92580
44 Ga0209026_1000314 3300025250 Bacteria 51962
45 Ga0209673_1000263 3300025273 Bacteria 99337
46 Ga0209564_1004430 3300025295 Bacteria 8601
47 Ga0209564_1011213 3300025295 Bacteria 4040
48 Ga0209758_1003312 3300025297 Bacteria 14872
49 Ga0209758_1020492 3300025297 Bacteria 3125
50 Ga0209050_1000323 3300025298 Bacteria 96020
51 Ga0207426_1000363 3300025302 Bacteria 81330
52 Ga0209051_1017857 3300025303 Bacteria 3158
53 Ga0207654_10020837 3300025911 Bacteria 3481
54 Ga0207671_10001416 3300025914 Bacteria 27847
55 Ga0207689_10006379 3300025942 Bacteria 10442
56 Ga0207667_10033219 3300025949 Bacteria 5551
57 Ga0207702_10024102 3300026078 Bacteria 5049
58 Ga0207702_10071405 3300026078 Bacteria 2990
59 Ga0207674_10003831 3300026116 Bacteria 18337
60 Ga0207674_10052037 3300026116 Bacteria 4177
61 Ga0307513_10095836 3300031456 Bacteria 3007
62 Ga0307509_10015282 3300031507 Bacteria 8970
63 Ga0307508_10002685 3300031616 Bacteria 18623
64 Ga0307414_10006766 3300032004 Bacteria 6412
65 Ga0439436_0003743 3300041404 Bacteria 4642
66 Ga0451853_1622626 3300041512 Bacteria 4949
67 Ga0439431_0000434 3300041997 Bacteria 8887
68 Ga0439457_000270 3300042014 Bacteria 14291
69 Ga0439462_0014416 3300042015 Bacteria 2031
70 Ga0466969_0000149 3300044656 Bacteria 37747
71 Ga0466969_0001477 3300044656 Bacteria 12638
72 Ga0466972_0000013 3300044658 Bacteria 229345
73 Ga0466972_0000040 3300044658 Bacteria 133427
74 Ga0466972_0000101 3300044658 Bacteria 75550
75 Ga0466972_0009554 3300044658 Bacteria 4871
76 Ga0466972_0010157 3300044658 Bacteria 4729
77 Ga0466965_0021354 3300044683 Bacteria 3116
78 Ga0466966_0000045 3300044684 Bacteria 92504
79 Ga0466966_0040963 3300044684 Bacteria 2978
80 Ga0466961_0076886 3300044693 Unclassified 2115
81 Ga0466971_0048031 3300044719 Unclassified 1919
82 Ga0466957_0000156 3300044842 Bacteria 29671
83 Ga0466957_0000725 3300044842 Bacteria 16890
84 Ga0466959_0000023 3300045049 Bacteria 124545
85 Ga0466959_0000399 3300045049 Bacteria 25506
86 Ga0495606_0013160 3300046507 Bacteria 6566
87 Ga0496122_0000555 3300048925 Bacteria 76648
88 Ga0496123_0008418 3300048926 Bacteria 9479
89 Ga0496125_0044441 3300048928 Bacteria 3757
90 Ga0501034_0182630 3300049571 Bacteria 2062
91 Ga0501047_0024238 3300049581 Bacteria 5825
92 Ga0501047_0034850 3300049581 Bacteria 4860
93 Ga0501047_0088900 3300049581 Bacteria 2966
94 Ga0501047_0091975 3300049581 Bacteria 2912
95 Ga0501225_0000182 3300049705 Bacteria 19491
96 Ga0501225_0010550 3300049705 Bacteria 2616
97 Ga0501241_000277 3300049758 Bacteria 11333
98 Ga0501044_0063221 3300049823 Bacteria 3782
99 Ga0501044_0107308 3300049823 Bacteria 2804
100 nmdc:mga0k408_13965_c1 3300050493 Bacteria 4413
101 nmdc:mga0k408_16549_c1 3300050493 Bacteria 4092
102 nmdc:mga0k408_53257_c1 3300050493 Bacteria 2345
103 nmdc:mga05p37_1502_c2 3300050507 Bacteria 17494
104 nmdc:mga05p37_24825_c1 3300050507 Bacteria 7287
105 nmdc:mga05p37_6859_c1 3300050507 Bacteria 13426
106 Ga0500578_0000018 3300053086 Bacteria 172537
107 Ga0500578_0000054 3300053086 Bacteria 121082
108 Ga0500578_0000155 3300053086 Bacteria 80380
109 Ga0500578_0025899 3300053086 Bacteria 3763
110 Ga0500578_0055711 3300053086 Bacteria 2530
111 Ga0500578_0106565 3300053086 Bacteria 1770
112 Ga0500646_0024706 3300053090 Bacteria 1619
113 Ga0500583_0000005 3300053092 Bacteria 166480
114 Ga0500583_0000043 3300053092 Bacteria 81313
115 Ga0500583_0000125 3300053092 Bacteria 35448
116 Ga0500583_0002977 3300053092 Bacteria 5223
117 Ga0500583_0004322 3300053092 Bacteria 4616
118 Ga0500652_005610 3300053131 Bacteria 3971
119 Ga0500652_056060 3300053131 Bacteria 1616
120 Ga0500604_0000943 3300053151 Bacteria 8050
121 Ga0500636_0031003 3300053177 Bacteria 3165
122 2738726318 2738541278 Bacteria 9755573
123 2738726960 2738541278 Bacteria 9755573
124 2738729587 2738541278 Bacteria 9755573
125 2738756744 2738541283 Bacteria 7222293
126 2840679414 2840677318 Bacteria 2664183
127 2896087225 2896085136 Bacteria 6129793
128 2896113844 2896109856 Bacteria 7140722
129 2929925489 2929921140 Bacteria 8649150
130 2929927028 2929921140 Bacteria 8649150
131 8003155087 8003151029 Bacteria 8187759
132 8003155914 8003151029 Bacteria 8187759
133 Ga0207648_10119380
134 JGI24739J22299_10000561
135 JGI24739J22299_10004520
136 JGI25154J39366_1000005
137 rootH2_10155869
138 rootL2_10055869
139 rootL2_10058844
140 rootL2_10058845
141 rootH1_10000662
142 rootH1_10010378
143 rootH1_10021824
144 JGI25160J50197_1012040
145 Ga0055526_1018549
146 Ga0055528_1000239
147 Ga0055530_10001812
148 Ga0065165_1000657
149 Ga0068869_100141837
150 Ga0070675_100127871
151 Ga0070698_100051002
152 Ga0068856_100004133
153 Ga0068856_100022385
154 Ga0075366_10017483
155 Ga0097621_100048165
156 Ga0114129_10010212
157 Ga0114129_10014200
158 Ga0114129_10032770
159 Ga0105241_10019516
160 Ga0105241_10059917
161 Ga0105237_10000374
162 Ga0105249_10075782
163 Ga0105239_10001450
164 Ga0105239_10001680
165 Ga0105239_10005014
166 Ga0157373_10158012
167 Ga0157370_10001374
168 Ga0182008_10000151
169 Ga0182006_1000769
170 Ga0163161_10108171
171 Ga0209646_1000003
172 Ga0209646_1000017
173 Ga0209646_1002283
174 Ga0209646_1003148
175 Ga0209026_1000182
176 Ga0209026_1000314
177 Ga0209673_1000263
178 Ga0209564_1004430
179 Ga0209564_1011213
180 Ga0209758_1003312
181 Ga0209758_1020492
182 Ga0209050_1000323
183 Ga0207426_1000363
184 Ga0209051_1017857
185 Ga0207654_10020837
186 Ga0207671_10001416
187 Ga0207689_10006379
188 Ga0207667_10033219
189 Ga0207702_10024102
190 Ga0207702_10071405
191 Ga0207674_10003831
192 Ga0207674_10052037
193 Ga0307513_10095836
194 Ga0307509_10015282
195 Ga0307508_10002685
196 Ga0307414_10006766
197 Ga0439436_0003743
198 Ga0451853_1622626
199 Ga0439431_0000434
200 Ga0439457_000270
201 Ga0439462_0014416
202 Ga0466969_0000149
203 Ga0466969_0001477
204 Ga0466972_0000013
205 Ga0466972_0000040
206 Ga0466972_0000101
207 Ga0466972_0009554
208 Ga0466972_0010157
209 Ga0466965_0021354
210 Ga0466966_0000045
211 Ga0466966_0040963
212 Ga0466961_0076886
213 Ga0466971_0048031
214 Ga0466957_0000156
215 Ga0466957_0000725
216 Ga0466959_0000023
217 Ga0466959_0000399
218 Ga0495606_0013160
219 Ga0496122_0000555
220 Ga0496123_0008418
221 Ga0496125_0044441
222 Ga0501034_0182630
223 Ga0501047_0024238
224 Ga0501047_0034850
225 Ga0501047_0088900
226 Ga0501047_0091975
227 Ga0501225_0000182
228 Ga0501225_0010550
229 Ga0501241_000277
230 Ga0501044_0063221
231 Ga0501044_0107308
232 nmdc:mga0k408_13965_c1
233 nmdc:mga0k408_16549_c1
234 nmdc:mga0k408_53257_c1
235 nmdc:mga05p37_1502_c2
236 nmdc:mga05p37_24825_c1
237 nmdc:mga05p37_6859_c1
238 Ga0500578_0000018
239 Ga0500578_0000054
240 Ga0500578_0000155
241 Ga0500578_0025899
242 Ga0500578_0055711
243 Ga0500578_0106565
244 Ga0500646_0024706
245 Ga0500583_0000005
246 Ga0500583_0000043
247 Ga0500583_0000125
248 Ga0500583_0002977
249 Ga0500583_0004322
250 Ga0500652_005610
251 Ga0500652_056060
252 Ga0500604_0000943
253 Ga0500636_0031003
254 2738726318
255 2738726960
256 2738729587
257 2738756744
258 2840679414
259 2896087225
260 2896113844
261 2929925489
262 2929927028
263 8003155087
264 8003155914

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF14322

SusD-like_3

Starch-binding associating with outer membrane

63

259

0.84

PF07980

SusD_RagB

SusD family

287

502

0.74

Structural Annotation

Top 5 Hits

ID Description Score Start End
2wqh-assembly1.cif.gz_A-2 crystal structure of ctpr3y3 0.7908 95 240
3l22-assembly1.cif.gz_A crystal structure of a susd superfamily protein (bf_0597) from bacteroides fragilis at 2.05 a resolution 0.781 34 477
6vfi-assembly1.cif.gz_B de novo designed octahedral nanoparticle o43_dn18 0.7792 95 240
6v8e-assembly1.cif.gz_A computationally designed c3-symmetric homotrimer from tpr repeat protein 0.7718 95 240
1na0-assembly1.cif.gz_A design of stable alpha-helical arrays from an idealized tpr motif 0.7682 95 240
ID Description Score Start End Superfamily
af_Q4DIV7_79_246_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.8213 98 238 1.25.40.10
af_Q8I510_494_639_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.8213 95 240 1.25.40.10
af_I1L8H9_27_173_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.817 98 240 1.25.40.10
af_Q6ZM24_6_136_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.8057 95 241 1.25.40.10
af_F1RBN2_125_252_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.8032 95 241 1.25.40.10
ID Description Score Start End GO Terms
AF-A0A7T9TB78-F1-model_v4 deleted 0.9521 31 484
AF-A0A6N8L0A3-F1-model_v4 RagB/SusD family nutrient uptake outer membrane protein 0.9507 18 484 GO:0009279
AF-H8KWF7-F1-model_v4 RagB/SusD family protein 0.9477 18 484
AF-A0A497Y4X2-F1-model_v4 SusD-like starch-binding protein associating with outer membrane 0.947 18 484 GO:0009279
AF-U2HVR7-F1-model_v4 SusD-like N-terminal domain-containing protein 0.9467 17 484 GO:0009279

Map