F154149

General Info

Members Datasets Scaffolds Average Seq Length
132 108 109 731

Family's Representative Sequence

Representative Sequence 3300049571|Ga0501034_0001122|Ga0501034_0001122_27425_29707
Length 760
Sequence MPQATRHVGRGHSRVEGRLKVTGQARYAAEYTADRLLHGWLVPSRIARGRVVRIDTREARAIDGVVEIYSHENRPIETARRDRSWRDDVAPPGEPFRPFQSAEIQFADQPVALVIAETLEAARDAAALVTVVYEAAEPVTDFRIARGDAYRPPRKRFGIPRPPRPRGNPGGAFREAPVHLEVQYEMAPEYHNPMELYGTTAVWESGGRLTVYDKTQGSQNVQAWLCKVFGLRKKNVRVINHHVGGAFGSGLRPHAHAFCAVMAALALERPVRVSLTRQEMFTTGYRPDTQHTIGLACDHEGRLKAVTHDGIAATSRFEDYQENLVNWSGLLYHCDNVRLRYQLAKLDTCTPCDMRAPGAASGVNVLECAIDELAFAAGLDPLAFRRLNYTDRDENGGKTLTSKSLEACYHAASEAFGWHQRSFAPRSMREGSELIGWGMASGVWESMVMKTSARCTLTPDGRLTVAVATSDIGTGTRTILTQIAADALGLAMDRVTTELGDSSLPASPVEGGSWTAASAGTAVTKACAELRERLFGHARKMTNSPLSDADIDSVTFADGRIARADDPARSVTIAEAMQAAEVPRLEGKGTAWPDLLGMLKYATYSHSAVFAEVRVDEELGVVRVTRVVCAVGAGRILNPKTARSQILGGIVMGIGMALHEEAMTDHALGRIVNHNLAEYHVPAHADIAGDIEVVFVEEHDDKASPIGVKGLGEIGIVGTAAAVANAIFHATGARVREFPITLDKILKAMPVPRSDDQAHP

Samples

Sample ID Description Type Environment
1 2511231028 Bradyrhizobium sp. YR681 Isolate Rhizosphere
2 2585427633 Neorhizobium galegae bv. officinalis HAMBI 1141 Isolate Nodule
3 2585427634 Neorhizobium galegae bv. orientalis HAMBI 540 Isolate Nodule
4 2599185156 Rhizobium sp. NFR03 Isolate Rhizoplane
5 2602042107 Bradyrhizobium sp. NFR13 Isolate Rhizoplane
6 2643221607 Rhizobium sp. Root73 Isolate Unclassified
7 2643221618 Ensifer sp. Root231 Isolate Unclassified
8 2643221626 Ensifer sp. Root31 Isolate Unclassified
9 2643221636 Rhizobium sp. Root1204 Isolate Unclassified
10 2643221655 Ensifer sp. Root1252 Isolate Unclassified
11 2643221659 Ensifer sp. Root127 Isolate Unclassified
12 2643221686 Rhizobium sp. Root1334 Isolate Unclassified
13 2643221698 Ensifer sp. Root142 Isolate Unclassified
14 2643221712 Ensifer sp. Root258 Isolate Unclassified
15 2671180139 Chelativorans sp. A52C2 Isolate Unclassified
16 2791355253 Rhizobium rhizosphaerae RD15 Isolate Rhizosphere
17 2842922631 Pararhizobium sp. R-72066 Isolate Unclassified
18 2893066018 Tardiphaga sp. P9-11 Isolate Unclassified
19 2897803580 Azospirillum doebereinerae GSF71 Isolate Unclassified
20 2919073203 Tardiphaga robiniae 1155 Isolate Unclassified
21 2932794094 Bradyrhizobium sp. S3.2.6 Isolate Nodule
22 2941531003 Bradyrhizobium sp. LB11.1 Isolate Nodule
23 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
24 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
25 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
26 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
27 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
28 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
29 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
30 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
31 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
32 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
33 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
34 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
35 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
36 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
37 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
38 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
39 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
40 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
41 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
42 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
43 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
44 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
45 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
46 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
47 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
48 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
49 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
50 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
51 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
52 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
54 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
61 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
62 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
63 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
64 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
65 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
66 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
67 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
68 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
69 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
70 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
71 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
72 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
73 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
74 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
75 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
76 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
77 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
78 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
79 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
81 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
82 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
83 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
84 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
85 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
86 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
87 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
88 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
89 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
90 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
91 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
92 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
93 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
94 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
95 3300053089 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 endosphere Metagenome Endosphere
96 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
97 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
98 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
99 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
100 3300053116 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 endosphere Metagenome Endosphere
101 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
102 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
103 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
104 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
105 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
106 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
107 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
108 8056875544 Rhizobium halophilum TRM95001 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 81.06
Metatranscriptomes 1.52
Isolates 17.42

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 20.45
Nodule 3.03
Rhizoplane 1.52
Rhizosphere 60.61
Stem 0
Stem Tuber 0
Unclassified 14.39

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10000021 3300003187 Bacteria 227826
2 rootH2_10066689 3300003320 Bacteria 4402
3 Ga0055526_1000177 3300003771 Bacteria 56674
4 Ga0055530_10011009 3300003791 Bacteria 3284
5 Ga0065165_1000581 3300005262 Bacteria 54008
6 Ga0065165_1001615 3300005262 Bacteria 22970
7 Ga0070670_100000108 3300005331 Bacteria 77575
8 Ga0070714_100006798 3300005435 Bacteria 8866
9 Ga0070713_100000075 3300005436 Bacteria 61698
10 Ga0068853_100000028 3300005539 Bacteria 126479
11 Ga0070665_100017076 3300005548 Bacteria 7279
12 Ga0068855_100088582 3300005563 Bacteria 3575
13 Ga0068854_100039921 3300005578 Bacteria 3308
14 Ga0068856_100060339 3300005614 Bacteria 3747
15 Ga0068856_100069604 3300005614 Bacteria 3480
16 Ga0075431_100028695 3300006847 Bacteria 5722
17 Ga0075433_10004121 3300006852 Bacteria 11271
18 Ga0075433_10006277 3300006852 Bacteria 9385
19 Ga0075434_100004939 3300006871 Bacteria 12090
20 Ga0075434_100014847 3300006871 Bacteria 7451
21 Ga0075429_100001056 3300006880 Bacteria 22010
22 Ga0075429_100027116 3300006880 Bacteria 4973
23 Ga0075435_100003908 3300007076 Bacteria 10176
24 Ga0075435_100012649 3300007076 Bacteria 6253
25 Ga0105240_10002346 3300009093 Bacteria 30550
26 Ga0105240_10010169 3300009093 Bacteria 13243
27 Ga0111539_10018240 3300009094 Bacteria 8691
28 Ga0114129_10012735 3300009147 Bacteria 11973
29 Ga0114129_10031588 3300009147 Bacteria 7485
30 Ga0105237_10006822 3300009545 Bacteria 12586
31 Ga0157371_10000551 3300013102 Bacteria 44580
32 Ga0157370_10043946 3300013104 Bacteria 4298
33 Ga0157369_10000992 3300013105 Bacteria 35926
34 Ga0157372_10003583 3300013307 Bacteria 16710
35 Ga0224712_10001981 3300022467 Bacteria 4953
36 Ga0224712_10005394 3300022467 Bacteria 3555
37 Ga0209025_1000010 3300025294 Bacteria 986612
38 Ga0209564_1000366 3300025295 Bacteria 83994
39 Ga0209564_1000500 3300025295 Bacteria 64540
40 Ga0209564_1002388 3300025295 Bacteria 15024
41 Ga0209050_1001307 3300025298 Bacteria 27991
42 Ga0207426_1000259 3300025302 Bacteria 114580
43 Ga0207426_1000434 3300025302 Bacteria 68127
44 Ga0207650_10000316 3300025925 Bacteria 47420
45 Ga0207700_10000075 3300025928 Bacteria 61681
46 Ga0207667_10005446 3300025949 Bacteria 15517
47 Ga0207639_10000070 3300026041 Bacteria 95428
48 Ga0207678_10007267 3300026067 Bacteria 9818
49 Ga0268266_10019873 3300028379 Bacteria 5724
50 Ga0307515_10105233 3300028794 Bacteria 3362
51 Ga0395900_0052198 3300037418 Bacteria 4209
52 Ga0395900_0084422 3300037418 Bacteria 3263
53 Ga0395898_0023049 3300037466 Bacteria 6295
54 Ga0436364_1111470 3300037853 Bacteria 15960
55 Ga0466965_0022171 3300044683 Bacteria 3062
56 Ga0466966_0013336 3300044684 Bacteria 5441
57 Ga0466959_0031231 3300045049 Bacteria 3942
58 Ga0495638_0000548 3300046460 Bacteria 42967
59 Ga0495638_0002404 3300046460 Bacteria 15317
60 Ga0495638_0012345 3300046460 Bacteria 5857
61 Ga0495650_0015889 3300046471 Bacteria 3842
62 Ga0495606_0012461 3300046507 Bacteria 6813
63 Ga0495610_0010646 3300046512 Bacteria 5696
64 Ga0495632_0002057 3300046519 Bacteria 15806
65 Ga0495648_0028717 3300046524 Bacteria 3701
66 Ga0495648_0056765 3300046524 Bacteria 2353
67 Ga0495668_0023193 3300046616 Bacteria 3542
68 Ga0495625_0000287 3300046660 Bacteria 78023
69 Ga0495625_0017177 3300046660 Bacteria 5667
70 Ga0495661_0002896 3300046665 Bacteria 12980
71 Ga0495681_0034686 3300047470 Bacteria 2512
72 Ga0495686_0000323 3300047472 Bacteria 79635
73 Ga0495686_0011897 3300047472 Bacteria 6116
74 Ga0496126_0017630 3300048929 Bacteria 7113
75 Ga0496126_0073803 3300048929 Bacteria 3032
76 Ga0501034_0001122 3300049571 Bacteria 37416
77 Ga0501046_0011555 3300049580 Bacteria 7550
78 Ga0501047_0050257 3300049581 Bacteria 4026
79 Ga0501048_0035775 3300049582 Bacteria 3572
80 Ga0501072_0001306 3300049588 Bacteria 18665
81 Ga0501076_0082955 3300049592 Bacteria 2574
82 Ga0501077_0004703 3300049593 Bacteria 8299
83 Ga0501079_0043472 3300049741 Bacteria 3468
84 Ga0501044_0115884 3300049823 Bacteria 2685
85 Ga0501045_0017981 3300049824 Bacteria 5020
86 nmdc:mga05p37_30106_c1 3300050507 Bacteria 6624
87 nmdc:mga05p37_78235_c1 3300050507 Bacteria 4072
88 nmdc:mga09592_32229_c1 3300050508 Bacteria 4369
89 nmdc:mga06r32_94605_c1 3300050510 Bacteria 2923
90 nmdc:mga0n895_14372_c1 3300050512 Bacteria 7187
91 nmdc:mga0rr50_22219_c1 3300050513 Bacteria 4350
92 nmdc:mga0rr50_9286_c1 3300050513 Bacteria 6176
93 nmdc:mga0a205_10650_c1 3300050515 Bacteria 8450
94 nmdc:mga0a205_8355_c1 3300050515 Bacteria 9416
95 Ga0500581_002849 3300053089 Bacteria 7635
96 Ga0500641_0000215 3300053096 Bacteria 21838
97 Ga0500650_0000740 3300053098 Bacteria 8834
98 Ga0500556_0000011 3300053104 Bacteria 253393
99 Ga0500556_0001463 3300053104 Bacteria 9928
100 Ga0500562_000451 3300053108 Bacteria 10026
101 Ga0500592_000483 3300053116 Bacteria 6589
102 Ga0500652_000248 3300053131 Bacteria 20322
103 Ga0500658_0001273 3300053134 Bacteria 10228
104 Ga0500559_0004331 3300053136 Bacteria 6767
105 Ga0500568_0000115 3300053139 Bacteria 72862
106 Ga0500604_0000069 3300053151 Bacteria 37014
107 Ga0500622_0000569 3300053156 Bacteria 33779
108 Ga0500622_0005793 3300053156 Bacteria 7326
109 Ga0500627_0001228 3300053158 Bacteria 7064

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300047470 Ga0495681_0034686 Ga0495681_0034686_37_2130 663
2 3300053116 Ga0500592_000483 Ga0500592_000483_4480_6573 665
3 3300044683 Ga0466965_0022171 Ga0466965_0022171_959_3052 673
4 3300037466 Ga0395898_0023049 Ga0395898_0023049_4210_6282 685
5 3300044684 Ga0466966_0013336 Ga0466966_0013336_2792_5092 689
6 3300045049 Ga0466959_0031231 Ga0466959_0031231_1384_3684 689
7 3300006852 Ga0075433_10004121 Ga0075433_100041215 691
8 3300006871 Ga0075434_100004939 Ga0075434_1000049395 691
9 3300007076 Ga0075435_100003908 Ga0075435_1000039084 691
10 3300009147 Ga0114129_10031588 Ga0114129_100315883 691
11 3300050507 nmdc:mga05p37_78235_c1 nmdc:mga05p37_78235_c1_319_2448 691
12 3300050512 nmdc:mga0n895_14372_c1 nmdc:mga0n895_14372_c1_1771_3900 691
13 3300050513 nmdc:mga0rr50_9286_c1 nmdc:mga0rr50_9286_c1_2260_4389 691
14 3300050515 nmdc:mga0a205_8355_c1 nmdc:mga0a205_8355_c1_1712_3841 691
15 3300046524 Ga0495648_0056765 Ga0495648_0056765_22_2214 696
16 3300009093 Ga0105240_10002346 Ga0105240_1000234626 697
17 3300009545 Ga0105237_10006822 Ga0105237_100068223 697
18 3300025949 Ga0207667_10005446 Ga0207667_100054464 697
19 3300006880 Ga0075429_100027116 Ga0075429_1000271165 701
20 3300009094 Ga0111539_10018240 Ga0111539_100182403 701
21 3300050508 nmdc:mga09592_32229_c1 nmdc:mga09592_32229_c1_2183_4321 701
22 3300006847 Ga0075431_100028695 Ga0075431_1000286952 702
23 3300050510 nmdc:mga06r32_94605_c1 nmdc:mga06r32_94605_c1_406_2535 704
24 3300005539 Ga0068853_100000028 Ga0068853_10000002864 710
25 3300025295 Ga0209564_1000500 Ga0209564_10005007 710
26 3300026041 Ga0207639_10000070 Ga0207639_1000007036 710
27 3300049593 Ga0501077_0004703 Ga0501077_0004703_3138_5276 712
28 3300025295 Ga0209564_1002388 Ga0209564_10023884 716
29 3300026067 Ga0207678_10007267 Ga0207678_100072675 716
30 3300046460 Ga0495638_0000548 Ga0495638_0000548_13636_15858 716
31 3300046460 Ga0495638_0012345 Ga0495638_0012345_1046_3301 716
32 3300046512 Ga0495610_0010646 Ga0495610_0010646_543_2798 716
33 3300046660 Ga0495625_0000287 Ga0495625_0000287_34921_37143 716
34 3300046660 Ga0495625_0017177 Ga0495625_0017177_2260_4482 716
35 3300046665 Ga0495661_0002896 Ga0495661_0002896_5746_8001 716
36 3300053089 Ga0500581_002849 Ga0500581_002849_2533_4788 716
37 3300053096 Ga0500641_0000215 Ga0500641_0000215_5371_7626 716
38 3300053098 Ga0500650_0000740 Ga0500650_0000740_4443_6698 716
39 3300053104 Ga0500556_0000011 Ga0500556_0000011_174617_176872 716
40 3300053108 Ga0500562_000451 Ga0500562_000451_2358_4613 716
41 3300053131 Ga0500652_000248 Ga0500652_000248_11123_13378 716
42 3300053134 Ga0500658_0001273 Ga0500658_0001273_2993_5215 716
43 3300053136 Ga0500559_0004331 Ga0500559_0004331_1254_3500 716
44 3300053139 Ga0500568_0000115 Ga0500568_0000115_8591_10846 716
45 3300053151 Ga0500604_0000069 Ga0500604_0000069_26042_28297 716
46 3300053156 Ga0500622_0000569 Ga0500622_0000569_23686_25941 716
47 3300053158 Ga0500627_0001228 Ga0500627_0001228_4268_6523 716
48 3300005262 Ga0065165_1001615 Ga0065165_10016154 721
49 3300025302 Ga0207426_1000434 Ga0207426_100043429 721
50 3300047472 Ga0495686_0011897 Ga0495686_0011897_1603_3879 725
51 3300037418 Ga0395900_0084422 Ga0395900_0084422_1051_3246 726
52 3300006852 Ga0075433_10006277 Ga0075433_100062777 727
53 3300006871 Ga0075434_100014847 Ga0075434_1000148472 727
54 3300006880 Ga0075429_100001056 Ga0075429_10000105623 727
55 3300007076 Ga0075435_100012649 Ga0075435_1000126492 727
56 3300050507 nmdc:mga05p37_30106_c1 nmdc:mga05p37_30106_c1_2115_4325 727
57 3300050513 nmdc:mga0rr50_22219_c1 nmdc:mga0rr50_22219_c1_1943_4153 727
58 3300050515 nmdc:mga0a205_10650_c1 nmdc:mga0a205_10650_c1_4280_6490 727
59 3300049580 Ga0501046_0011555 Ga0501046_0011555_3505_5691 728
60 3300049582 Ga0501048_0035775 Ga0501048_0035775_352_2538 728
61 3300049592 Ga0501076_0082955 Ga0501076_0082955_67_2253 728
62 3300049741 Ga0501079_0043472 Ga0501079_0043472_72_2258 728
63 3300049824 Ga0501045_0017981 Ga0501045_0017981_1520_3706 728
64 3300049588 Ga0501072_0001306 Ga0501072_0001306_11367_13595 730
65 3300046471 Ga0495650_0015889 Ga0495650_0015889_789_3029 731
66 3300048929 Ga0496126_0017630 Ga0496126_0017630_4367_6619 731
67 3300022467 Ga0224712_10005394 Ga0224712_100053942 732
68 3300005262 Ga0065165_1000581 Ga0065165_100058162 733
69 3300025302 Ga0207426_1000259 Ga0207426_100025943 733
70 3300037418 Ga0395900_0052198 Ga0395900_0052198_688_2943 734
71 3300003320 rootH2_10066689 rootH2_100666892 735
72 3300003771 Ga0055526_1000177 Ga0055526_100017728 735
73 3300005578 Ga0068854_100039921 Ga0068854_1000399212 735
74 3300005614 Ga0068856_100060339 Ga0068856_1000603392 735
75 3300013102 Ga0157371_10000551 Ga0157371_1000055143 735
76 3300013104 Ga0157370_10043946 Ga0157370_100439462 735
77 3300025295 Ga0209564_1000366 Ga0209564_100036654 735
78 3300049823 Ga0501044_0115884 Ga0501044_0115884_236_2485 735
79 3300009147 Ga0114129_10012735 Ga0114129_1001273510 736
80 3300047472 Ga0495686_0000323 Ga0495686_0000323_40325_42559 741
81 3300003791 Ga0055530_10011009 Ga0055530_100110092 742
82 3300005436 Ga0070713_100000075 Ga0070713_10000007513 742
83 3300025298 Ga0209050_1001307 Ga0209050_10013075 742
84 3300025928 Ga0207700_10000075 Ga0207700_1000007542 742
85 iso_pu_bacteria 2585427633 2585993416 742
86 iso_pu_bacteria 2585427634 2586004073 742
87 iso_pu_bacteria 2599185156 2599332192 742
88 iso_pu_bacteria 2643221607 2644048039 742
89 iso_pu_bacteria 2643221618 2644109825 742
90 iso_pu_bacteria 2643221626 2644145447 742
91 iso_pu_bacteria 2643221636 2644200410 742
92 iso_pu_bacteria 2643221655 2644312703 742
93 iso_pu_bacteria 2643221659 2644336734 742
94 iso_pu_bacteria 2643221686 2644480834 742
95 iso_pu_bacteria 2643221698 2644541029 742
96 iso_pu_bacteria 2643221712 2644618434 742
97 iso_pu_bacteria 2842922631 2842924548 742
98 iso_pu_bacteria 2897803580 2897805384 742
99 iso_pu_bacteria 2932794094 2932800250 742
100 iso_pu_bacteria 8056875544 8056879976 742
101 3300037853 Ga0436364_1111470 Ga0436364_1111470_12559_14790 743
102 iso_pu_bacteria 2602042107 2603857045 743
103 iso_pu_bacteria 2791355253 2793282751 743
104 iso_pu_bacteria 2893066018 2893066927 743
105 iso_pu_bacteria 2919073203 2919079142 743
106 iso_pu_bacteria 2511231028 2511397630 744
107 3300005548 Ga0070665_100017076 Ga0070665_1000170762 745
108 3300028379 Ga0268266_10019873 Ga0268266_100198732 745
109 iso_pu_bacteria 2671180139 2671694315 745
110 iso_pu_bacteria 2941531003 2941534644 745
111 3300003187 JGI25151J46595_10000021 JGI25151J46595_10000021150 746
112 3300005331 Ga0070670_100000108 Ga0070670_10000010867 746
113 3300005435 Ga0070714_100006798 Ga0070714_1000067985 746
114 3300005563 Ga0068855_100088582 Ga0068855_1000885822 746
115 3300005614 Ga0068856_100069604 Ga0068856_1000696041 746
116 3300009093 Ga0105240_10010169 Ga0105240_1001016910 746
117 3300013105 Ga0157369_10000992 Ga0157369_1000099230 746
118 3300013307 Ga0157372_10003583 Ga0157372_100035836 746
119 3300022467 Ga0224712_10001981 Ga0224712_100019814 746
120 3300025294 Ga0209025_1000010 Ga0209025_1000010346 746
121 3300025925 Ga0207650_10000316 Ga0207650_100003162 746
122 3300028794 Ga0307515_10105233 Ga0307515_101052333 746
123 3300046460 Ga0495638_0002404 Ga0495638_0002404_10129_12384 746
124 3300046507 Ga0495606_0012461 Ga0495606_0012461_155_2410 746
125 3300046519 Ga0495632_0002057 Ga0495632_0002057_2917_5172 746
126 3300046524 Ga0495648_0028717 Ga0495648_0028717_1179_3434 746
127 3300046616 Ga0495668_0023193 Ga0495668_0023193_788_3061 746
128 3300048929 Ga0496126_0073803 Ga0496126_0073803_735_2975 746
129 3300049571 Ga0501034_0001122 Ga0501034_0001122_27425_29707 746
130 3300049581 Ga0501047_0050257 Ga0501047_0050257_1704_3962 746
131 3300053104 Ga0500556_0001463 Ga0500556_0001463_1893_4148 746
132 3300053156 Ga0500622_0005793 Ga0500622_0005793_4902_7157 746

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02738

MoCoBD_1

Molybdopterin cofactor-binding domain

155

389

0.96

PF01315

Ald_Xan_dh_C

Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain

22

137

0.9

PF20256

MoCoBD_2

Molybdopterin cofactor-binding domain

411

688

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
5g5h-assembly1.cif.gz_C escherichia coli periplasmic aldehyde oxidase r440h mutant 0.9577 8 745
5g5g-assembly1.cif.gz_C escherichia coli periplasmic aldehyde oxidase 0.9544 8 745
5g5h-assembly1.cif.gz_C escherichia coli periplasmic aldehyde oxidase r440h mutant 0.9295 8 745
5g5g-assembly1.cif.gz_C escherichia coli periplasmic aldehyde oxidase 0.9251 8 745
5y6q-assembly1.cif.gz_C crystal structure of an aldehyde oxidase from methylobacillus sp. ky4400 0.9056 6 742
ID Description Score Start End Superfamily
af_Q46799_603_751_3.30.365.10 Alpha Beta;2-Layer Sandwich;Aldehyde Oxidoreductase; domain 4;Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.9242 608 745 3.30.365.10
3hrdF01 Alpha Beta;2-Layer Sandwich;Aldehyde Oxidoreductase; domain 4;Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.9131 603 745 3.30.365.10
1rm6D04 Alpha Beta;2-Layer Sandwich;Aldehyde Oxidoreductase; domain 4;Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.909 357 745 3.30.365.10
1sb3D01 Alpha Beta;2-Layer Sandwich;Aldehyde Oxidoreductase; domain 4;Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.9089 193 280 3.30.365.10
1t3qB04 Alpha Beta;2-Layer Sandwich;Aldehyde Oxidoreductase; domain 4;Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.9079 603 745 3.30.365.10
ID Description Score Start End GO Terms
AF-A0A4Q3GUE2-F1-model_v4 Xanthine dehydrogenase family protein molybdopterin-binding subunit 0.9868 6 612 GO:0005506
GO:0016491
AF-A0A4Q5L902-F1-model_v4 Xanthine dehydrogenase family protein molybdopterin-binding subunit 0.9867 8 743 GO:0005506
GO:0016491
AF-A0A4Q3N5G0-F1-model_v4 deleted 0.9862 177 524
AF-A0A4V2A992-F1-model_v4 deleted 0.9847 48 464
AF-A0A0P9VJB8-F1-model_v4 Aldehyde oxidase and xanthine dehydrogenase 0.9846 1 543 GO:0005506
GO:0016491

Feature Viewer

pLDDT pTM Quality
91.13 0.91 High
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Predicted Structure (AlphaFold2)

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