F158160

General Info

Members Datasets Scaffolds Average Seq Length
133 105 266 561

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2833709550|2833710185
Length 607
Sequence DAEGDAKETPGLTHEEAAALAHEAVAAQAPVEPQDVPSAPDGIDGFEAARAWLAQDPDGETRAELRDLIGAAETGDEDAIADLADRFAGRLAFGTAGLRGELGAGSNRMNRVLVTQAAAGLAAYLIDKAGADAAAPGAAAAPAVVVGYDGRRNSQIFAHDSTELFAGAGLRAILLPRLLPTPVLAFAVRHLGAAAGVMVTASHNPPNDNGYKVYLGGAEQGSQIVPPADAEIAAHIQRIADAGDIAALPRSLGFEVAPESLIDAYIEETAAVAPAPEGAEGLRWVYTAMHGVGWETFSRILETAGYQAPEPVTAQLEPDGAFPTVAFPNPEEPGAMDLAFETARAAEADLIIANDPDADRLAVAVPDPDAEGGWRRLSGNQIGLLLGWRAARRAKESGAIDGASLACSLVSSPGLQTVAEHYGLGFHATLTGFKWISRAPGLVYGFEEALGYLVNPETVRDKDGISAAVAMLGMVAEARGRGASLHDLMREFDETFGYFASDQISVRVDDLSEIGRIMSALREQHPSSVGDVGVDHIDDLLEGVDDLPPGDVLRLWLVDGSRLIVRPSGTEPKLKLYLDVRGDSADDAAARIGALNAGARALLDQVG

Samples

Sample ID Description Type Environment
1 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
2 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
3 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
4 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
5 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
6 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
7 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
8 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
9 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
10 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
11 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
12 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
13 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
14 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
15 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
16 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
17 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
18 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
19 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
20 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
21 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
22 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
23 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
24 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
25 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
26 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
27 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
28 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
29 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
30 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
31 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
32 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
36 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
37 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
38 3300038705 Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Metagenome Unclassified
39 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
40 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
41 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
42 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
43 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
44 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
45 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
46 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
47 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
48 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
49 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
50 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
51 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
52 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
53 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
54 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
55 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
56 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
57 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
58 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
59 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
60 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
61 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
62 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
63 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
64 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
65 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
66 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
67 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
68 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
69 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
70 2833709550 Microbacterium sp. 3290 Isolate Rhizosphere
71 2585428094 Herbiconiux sp. YR403 Isolate Rhizosphere
72 2585428157 Microbacterium sp. CF335 Isolate Rhizosphere
73 2643221546 Microbacterium sp. Root53 Isolate Unclassified
74 2643221572 Leifsonia sp. Root60 Isolate Unclassified
75 2643221575 Microbacterium sp. Root61 Isolate Unclassified
76 2643221597 Microbacterium sp. Root180 Isolate Unclassified
77 2643221616 Leifsonia sp. Root227 Isolate Unclassified
78 2643221649 Leifsonia sp. Root4 Isolate Unclassified
79 2643221669 Leifsonia sp. Root1293 Isolate Unclassified
80 2747842429 Microbacterium sp. WCS2014-259 Isolate Unclassified
81 2808606447 Microbacterium sp. HAR-UPW-R2A-48 Isolate Unclassified
82 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
83 2844841374 Leifsonia soli DSM 23871 Isolate Rhizosphere
84 2852632344 Microbacterium sp. AK009 Isolate Rhizosphere
85 2852646457 Microbacterium sp. AK031 Isolate Rhizosphere
86 2857720070 Microbacterium sp. R-72113 Isolate Unclassified
87 2857723135 Microbacterium sp. R-72356 Isolate Unclassified
88 2870628048 Microbacterium thalassium DSM 12511 Isolate Rhizosphere
89 2883821847 Microlunatus elymi KUDC0627 Isolate Rhizosphere
90 2884763398 Leifsonia sp. PS1209 Isolate Stem Tuber
91 2895660088 Leifsonia flava SYP-B2174 Isolate Rhizosphere
92 2906799679 Microbacterium karelineae TRM80801 Isolate Unclassified
93 2919055335 Leifsonia sp. 1010 Isolate Rhizosphere
94 2919395869 Microbacterium resistens 2980 Isolate Unclassified
95 2919523602 Leifsonia shinshuensis 3821 Isolate Unclassified
96 2928090899 Microbacterium sp. 1262 Isolate Rhizosphere
97 2928153084 Leifsonia sp. 563 Isolate Unclassified
98 2945968032 Microbacterium murale W2I7 Isolate Rhizosphere
99 2946033335 Microbacterium sp. W4I4 Isolate Rhizosphere
100 2946041624 Microbacterium natoriense W4I9-1 Isolate Rhizosphere
101 2946080515 Microbacterium sp. W4I20 Isolate Rhizosphere
102 2984580707 Microbacterium paludicola SORGH_AS919 Isolate Aerial Root
103 8004182704 Microbacterium paraoxydans ku-mp Isolate Unclassified
104 8004212874 Microbacterium sp. NC79 Isolate Rhizosphere
105 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 70.68
Metatranscriptomes 2.26
Isolates 27.07

Biome Distribution

Category Percentage (%)
Aerial Root 0.75
Bulb 0
Endosphere 28.57
Nodule 0
Rhizoplane 6.77
Rhizosphere 28.57
Stem 0
Stem Tuber 0.75
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24735J21928_10001963 3300002067 Bacteria 7228
2 JGI25164J39214_1001304 3300002772 Bacteria 6299
3 JGI25159J45721_1008054 3300002987 Bacteria 2938
4 JGI25165J46597_1000044 3300003214 Bacteria 263289
5 Ga0006562J51391_1040064 3300003578 Bacteria 14444
6 Ga0006562J51391_1040065 3300003578 Bacteria 11490
7 Ga0055539_1000027 3300003752 Bacteria 258020
8 Ga0055533_1000020 3300003756 Bacteria 353998
9 Ga0055525_1000151 3300003759 Bacteria 94158
10 Ga0055525_1000647 3300003759 Bacteria 13665
11 Ga0055527_1000005 3300003760 Bacteria 504776
12 Ga0055542_1000006 3300003762 Bacteria 504776
13 Ga0055529_1000400 3300003763 Bacteria 46269
14 Ga0075365_10004078 3300006038 Bacteria 7672
15 Ga0075363_100011505 3300006048 Bacteria 4239
16 Ga0075367_10000809 3300006178 Bacteria 12350
17 Ga0075369_10006488 3300006186 Bacteria 4426
18 Ga0105244_10006343 3300009036 Bacteria 7684
19 Ga0105250_10003756 3300009092 Bacteria 7136
20 Ga0206353_10351266 3300020082 Bacteria 4698
21 Ga0209566_100043 3300025225 Bacteria 266609
22 Ga0209674_100001 3300025226 Bacteria 4013750
23 Ga0209672_100003 3300025228 Bacteria 1560476
24 Ga0209147_100285 3300025229 Bacteria 42943
25 Ga0209563_100001 3300025230 Bacteria 4013775
26 Ga0209563_100222 3300025230 Bacteria 28212
27 Ga0207427_100077 3300025231 Bacteria 149591
28 Ga0209437_100530 3300025233 Bacteria 26486
29 Ga0209677_100001 3300025253 Bacteria 4013787
30 Ga0209677_100723 3300025253 Bacteria 16824
31 Ga0209148_1000004 3300025254 Bacteria 1844481
32 Ga0209233_1000014 3300025261 Bacteria 996641
33 Ga0209455_1000046 3300025272 Bacteria 382681
34 Ga0209455_1002660 3300025272 Bacteria 6732
35 Ga0209130_1003503 3300025284 Bacteria 6596
36 Ga0209025_1000826 3300025294 Bacteria 49373
37 Ga0209025_1016332 3300025294 Bacteria 4392
38 Ga0207696_1002474 3300025711 Bacteria 9031
39 Ga0207655_1000756 3300025728 Bacteria 36259
40 Ga0207713_1008635 3300025735 Bacteria 5835
41 Ga0307409_100032977 3300031995 Bacteria 3763
42 Ga0395899_0001686 3300037312 Bacteria 18415
43 Ga0395898_0000098 3300037466 Bacteria 229806
44 Ga0237819_01370 3300038705 Bacteria 6382
45 Ga0466961_0130318 3300044693 Bacteria 1576
46 Ga0466970_0006650 3300044765 Bacteria 5778
47 Ga0496100_0022777 3300048903 Bacteria 3794
48 Ga0496105_0093909 3300048908 Bacteria 2477
49 Ga0496105_0115795 3300048908 Bacteria 2211
50 Ga0496109_0023363 3300048912 Bacteria 5488
51 Ga0496109_0085951 3300048912 Bacteria 2904
52 Ga0496113_0183295 3300048916 Bacteria 1660
53 Ga0496114_0060644 3300048917 Bacteria 3162
54 Ga0496114_0083114 3300048917 Bacteria 2708
55 Ga0496114_0083225 3300048917 Bacteria 2707
56 Ga0496116_0019566 3300048919 Bacteria 5180
57 Ga0496117_0001427 3300048920 Bacteria 34547
58 Ga0496117_0001658 3300048920 Bacteria 31204
59 Ga0496117_0020382 3300048920 Bacteria 5405
60 Ga0496117_0052987 3300048920 Bacteria 2854
61 Ga0496118_0009293 3300048921 Bacteria 9967
62 Ga0496119_0001365 3300048922 Bacteria 29774
63 Ga0496120_0000622 3300048923 Bacteria 53364
64 Ga0496120_0078091 3300048923 Bacteria 1801
65 Ga0496122_0000020 3300048925 Bacteria 401675
66 Ga0496122_0000522 3300048925 Bacteria 79377
67 Ga0496122_0009941 3300048925 Bacteria 9909
68 Ga0496122_0039070 3300048925 Bacteria 3790
69 Ga0496123_0000003 3300048926 Bacteria 866556
70 Ga0496123_0000251 3300048926 Bacteria 108664
71 Ga0496124_0001543 3300048927 Bacteria 33363
72 Ga0496124_0009389 3300048927 Bacteria 10079
73 Ga0496125_0006622 3300048928 Bacteria 12469
74 Ga0496125_0008463 3300048928 Bacteria 10768
75 Ga0496125_0020095 3300048928 Bacteria 6280
76 Ga0496125_0025405 3300048928 Bacteria 5423
77 Ga0496126_0000565 3300048929 Bacteria 70942
78 Ga0496126_0014684 3300048929 Bacteria 7905
79 Ga0496126_0191390 3300048929 Bacteria 1732
80 Ga0496126_0215273 3300048929 Bacteria 1616
81 Ga0501034_0004491 3300049571 Bacteria 15509
82 Ga0501034_0020491 3300049571 Bacteria 6752
83 Ga0501038_0028420 3300049574 Bacteria 4969
84 Ga0501042_0005488 3300049578 Bacteria 8174
85 Ga0501070_0000050 3300049586 Bacteria 103310
86 Ga0501070_0004905 3300049586 Bacteria 11424
87 Ga0501073_0000012 3300049589 Bacteria 161319
88 Ga0501080_0055657 3300049742 Bacteria 3684
89 Ga0501083_0000123 3300049744 Bacteria 52722
90 nmdc:mga0yw44_11772_c1 3300050492 Bacteria 4534
91 nmdc:mga0yw44_6612_c1 3300050492 Bacteria 5619
92 nmdc:mga06z11_3910_c1 3300050494 Bacteria 5810
93 nmdc:mga0sz30_11416_c1 3300050516 Bacteria 3428
94 Ga0500635_0000004 3300053080 Bacteria 210675
95 Ga0495619_0044925 3300053085 Bacteria 2901
96 Ga0500593_002888 3300053117 Bacteria 6386
97 Ga0500655_003206 3300053133 Bacteria 2967
98 2833710185 2833709550 Bacteria 4008291
99 2587863815 2585428094 Bacteria 3604039
100 2588106821 2585428157 Bacteria 3018951
101 2643753110 2643221546 Bacteria 2910897
102 2643874561 2643221572 Bacteria 3614809
103 2643888433 2643221575 Bacteria 4022601
104 2643996548 2643221597 Bacteria 3347721
105 2644095005 2643221616 Bacteria 4066575
106 2644277624 2643221649 Bacteria 3867359
107 2644381617 2643221669 Bacteria 3611286
108 2747951636 2747842429 Bacteria 3914386
109 2809226756 2808606447 Bacteria 3572005
110 2812322360 2811994872 Bacteria 4121241
111 2844841486 2844841374 Bacteria 3917147
112 2852632975 2852632344 Bacteria 3463163
113 2852649526 2852646457 Bacteria 3408613
114 2857722270 2857720070 Bacteria 3189373
115 2857725018 2857723135 Bacteria 4217853
116 2870629649 2870628048 Bacteria 3696012
117 2883823288 2883821847 Bacteria 5121194
118 2884764386 2884763398 Bacteria 4091164
119 2895663423 2895660088 Bacteria 3782833
120 2906801959 2906799679 Bacteria 4031749
121 2919057134 2919055335 Bacteria 3875751
122 2919396746 2919395869 Bacteria 3704152
123 2919527188 2919523602 Bacteria 3788128
124 2928091114 2928090899 Bacteria 3158267
125 2928154907 2928153084 Bacteria 4020257
126 2945968375 2945968032 Bacteria 4111363
127 2946036925 2946033335 Bacteria 3835514
128 2946044825 2946041624 Bacteria 4191385
129 2946084550 2946080515 Bacteria 4310960
130 2984582126 2984580707 Bacteria 3351387
131 8004185711 8004182704 Bacteria 3391155
132 8004213526 8004212874 Bacteria 2861420
133 8045832817 8045830549 Bacteria 4444727
134 JGI24735J21928_10001963
135 JGI25164J39214_1001304
136 JGI25159J45721_1008054
137 JGI25165J46597_1000044
138 Ga0006562J51391_1040064
139 Ga0006562J51391_1040065
140 Ga0055539_1000027
141 Ga0055533_1000020
142 Ga0055525_1000151
143 Ga0055525_1000647
144 Ga0055527_1000005
145 Ga0055542_1000006
146 Ga0055529_1000400
147 Ga0075365_10004078
148 Ga0075363_100011505
149 Ga0075367_10000809
150 Ga0075369_10006488
151 Ga0105244_10006343
152 Ga0105250_10003756
153 Ga0206353_10351266
154 Ga0209566_100043
155 Ga0209674_100001
156 Ga0209672_100003
157 Ga0209147_100285
158 Ga0209563_100001
159 Ga0209563_100222
160 Ga0207427_100077
161 Ga0209437_100530
162 Ga0209677_100001
163 Ga0209677_100723
164 Ga0209148_1000004
165 Ga0209233_1000014
166 Ga0209455_1000046
167 Ga0209455_1002660
168 Ga0209130_1003503
169 Ga0209025_1000826
170 Ga0209025_1016332
171 Ga0207696_1002474
172 Ga0207655_1000756
173 Ga0207713_1008635
174 Ga0307409_100032977
175 Ga0395899_0001686
176 Ga0395898_0000098
177 Ga0237819_01370
178 Ga0466961_0130318
179 Ga0466970_0006650
180 Ga0496100_0022777
181 Ga0496105_0093909
182 Ga0496105_0115795
183 Ga0496109_0023363
184 Ga0496109_0085951
185 Ga0496113_0183295
186 Ga0496114_0060644
187 Ga0496114_0083114
188 Ga0496114_0083225
189 Ga0496116_0019566
190 Ga0496117_0001427
191 Ga0496117_0001658
192 Ga0496117_0020382
193 Ga0496117_0052987
194 Ga0496118_0009293
195 Ga0496119_0001365
196 Ga0496120_0000622
197 Ga0496120_0078091
198 Ga0496122_0000020
199 Ga0496122_0000522
200 Ga0496122_0009941
201 Ga0496122_0039070
202 Ga0496123_0000003
203 Ga0496123_0000251
204 Ga0496124_0001543
205 Ga0496124_0009389
206 Ga0496125_0006622
207 Ga0496125_0008463
208 Ga0496125_0020095
209 Ga0496125_0025405
210 Ga0496126_0000565
211 Ga0496126_0014684
212 Ga0496126_0191390
213 Ga0496126_0215273
214 Ga0501034_0004491
215 Ga0501034_0020491
216 Ga0501038_0028420
217 Ga0501042_0005488
218 Ga0501070_0000050
219 Ga0501070_0004905
220 Ga0501073_0000012
221 Ga0501080_0055657
222 Ga0501083_0000123
223 nmdc:mga0yw44_11772_c1
224 nmdc:mga0yw44_6612_c1
225 nmdc:mga06z11_3910_c1
226 nmdc:mga0sz30_11416_c1
227 Ga0500635_0000004
228 Ga0495619_0044925
229 Ga0500593_002888
230 Ga0500655_003206
231 2833710185
232 2587863815
233 2588106821
234 2643753110
235 2643874561
236 2643888433
237 2643996548
238 2644095005
239 2644277624
240 2644381617
241 2747951636
242 2809226756
243 2812322360
244 2844841486
245 2852632975
246 2852649526
247 2857722270
248 2857725018
249 2870629649
250 2883823288
251 2884764386
252 2895663423
253 2906801959
254 2919057134
255 2919396746
256 2919527188
257 2928091114
258 2928154907
259 2945968375
260 2946036925
261 2946044825
262 2946084550
263 2984582126
264 8004185711
265 8004213526
266 8045832817

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02878

PGM_PMM_I

Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I

90

242

0.94

PF02879

PGM_PMM_II

Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II

263

372

0.93

PF02880

PGM_PMM_III

Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III

378

496

0.83

PF00408

PGM_PMM_IV

Phosphoglucomutase/phosphomannomutase, C-terminal domain

504

592

0.74

Structural Annotation

Top 5 Hits

ID Description Score Start End
2fkm-assembly1.cif.gz_X pmm/pgm s108d mutant with alpha-d-glucose 1,6-bisphosphate bound 0.8295 63 561
1p5g-assembly1.cif.gz_X enzyme-ligand complex of p. aeruginosa pmm/pgm 0.8237 63 561
3c04-assembly1.cif.gz_A structure of the p368g mutant of pmm/pgm from p. aeruginosa 0.8163 59 561
4il8-assembly1.cif.gz_A crystal structure of an h329a mutant of p. aeruginosa pmm/pgm 0.806 59 561
2fkm-assembly1.cif.gz_X pmm/pgm s108d mutant with alpha-d-glucose 1,6-bisphosphate bound 0.8029 63 561
ID Description Score Start End Superfamily
af_O74478_35_192_3.40.120.10 Alpha Beta;3-Layer(aba) Sandwich;Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3;Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.9571 59 200 3.40.120.10
af_Q2FVC1_33_181_3.40.120.10 Alpha Beta;3-Layer(aba) Sandwich;Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3;Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.953 57 201 3.40.120.10
af_O53360_22_203_3.40.120.10 Alpha Beta;3-Layer(aba) Sandwich;Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3;Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.914 51 232 3.40.120.10
1tuoA01 Alpha Beta;3-Layer(aba) Sandwich;Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3;Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.8961 59 217 3.40.120.10
af_A1Z9V3_60_223_3.40.120.10 Alpha Beta;3-Layer(aba) Sandwich;Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3;Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.8922 55 200 3.40.120.10
ID Description Score Start End GO Terms
AF-A0A259S4P1-F1-model_v4 Phosphomannomutase 0.9904 12 230 GO:0000287
GO:0005975
GO:0006166
GO:0008973
AF-A0A4Y9H4Q8-F1-model_v4 deleted 0.9804 68 200
AF-A0A443J9N2-F1-model_v4 deleted 0.9789 13 173
AF-A0A3D6BP99-F1-model_v4 Phosphoglucomutase 0.9748 68 200 GO:0000287
GO:0005975
GO:0006166
GO:0008973
AF-U2SVB8-F1-model_v4 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 0.9717 340 562 GO:0005975
GO:0006166
GO:0008973

Map