F160169

General Info

Members Datasets Scaffolds Average Seq Length
134 113 268 492

Family's Representative Sequence

Representative Sequence 3300028563|Ga0265319_1002973|Ga0265319_10029731
Length 532
Sequence LISFANLENSLGISPFLMAARLAAMAESERRGRACMDYSLKNLLSGTTVLALRGDADRAITGLVTDSRRVVPGALFFALEGARVNGADFVEEAIGRGAVAVVSARPPAKHSPAVWAQVLDVRVAMAEIARRFYRDPDEDLFLTGVTGTNGKTTVSMMTQFLLKGPDAPCGLIGTVRYEVGARTLPSYKTTPESVDLFALFDQMRDAGCTACAMEVSSHAVAQARIHGVRFDAVAFTNLTQDHLDYHGSLENYFNAKARLFTGECGHQARVAVINVDDPYGRVLVDRLPAGVEAVTYGFSASAGLRAVNVVLAPGGSQCEVEWTGGRARLTLALPGRYNILNALCALGLARAAGRDLNLLVPRLAQFSGVPGRMEKIDSSQPFQVLVDYAHTDDALSHALTMLRDVCAGRLLVVFGCGGNRDRAKRPRMTAAVQRWADFAWATADNPRKEPLAQIFADMRGGLTAPTRIRFVDDRRRAIALAMEEAKPGDCVLIAGKGHETFQEFADTVVPFDDRQVARELLNLRYGTTLRRP

Samples

Sample ID Description Type Environment
1 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
2 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
5 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
6 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
7 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
8 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
9 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
10 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
11 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
12 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
13 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
14 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
15 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
16 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
17 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
18 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
19 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
20 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
21 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
22 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
23 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
24 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
25 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
26 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
27 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
28 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
29 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
30 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
31 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
44 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
45 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
48 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
49 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
50 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
51 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
52 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
53 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
54 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
55 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
56 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
57 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
58 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
59 3300041511 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_12 MetaG Metagenome Unclassified
60 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
61 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
62 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
63 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
64 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
65 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
66 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
67 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
68 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
69 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
70 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
71 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
72 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
73 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
74 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
75 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
76 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
77 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
78 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
79 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
80 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
81 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
82 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
83 2511231119 Bacillus velezensis CAU B946 Isolate Rhizosphere
84 2540341094 Bacillus subtilis XF-1 Isolate Rhizosphere
85 2545555800 Bacillus amyloliquefaciens EGD-AQ14 Isolate Rhizosphere
86 2576861599 Bacillus amyloliquefaciens EGD-AQ14 Isolate Rhizosphere
87 2630968484 Bacillus methylotrophicus KACC 13105 Isolate Rhizosphere
88 2648501850 Bacillus amyloliquefaciens RHNK22 Isolate Rhizosphere
89 2671180844 Bacillus amyloliquefaciens Bs006 Isolate Unclassified
90 2684623219 Planctomyces sp. SH-PL14 Isolate Unclassified
91 2695420354 Bacillus sp. Co1-6 Isolate Unclassified
92 2716884898 Bacillus methylotrophicus FKM10 Isolate Rhizosphere
93 2808606399 Bacillus sp. SJZ110 Isolate Rhizosphere
94 2816332295 Bacillus paralicheniformis MDJK30 Isolate Rhizosphere
95 2860837431 Bacillus sp. WR11 Isolate Unclassified
96 2877768649 Bacillus amyloliquefaciens Y14 Isolate Rhizosphere
97 2880169592 Bacillus velezensis T20E-257 Isolate Unclassified
98 2897109615 Bacillus amyloliquefaciens YP6 Isolate Unclassified
99 2904560550 Bacillus velezensis 1780 Isolate Rhizosphere
100 2962290636 Bacillus subtilis TLO3 Isolate Rhizosphere
101 2969136845 Bacillus subtilis TLO3 Isolate Rhizosphere
102 2969141011 Bacillus velezensis MH25 Isolate Unclassified
103 2969765954 Bacillus intestinalis GM2 Isolate Rhizosphere
104 2969770375 Bacillus subtilis GM5 Isolate Rhizosphere
105 2971893375 Bacillus sp. HNA3 Isolate Rhizosphere
106 2980492589 Bacillus subtilis GQJK2 Isolate Rhizosphere
107 3006858327 Bacillus paralicheniformis SUBG0010 Isolate Unclassified
108 3006879489 Bacillus atrophaeus UCMB-5137 Isolate Rhizosphere
109 8022630665 Bacillus sp. PW192 Isolate Rhizosphere
110 8022653035 Bacillus sp. Rc4 Isolate Unclassified
111 8036736890 Flavobacterium dauae TCH3-2 Isolate Rhizosphere
112 8051952484 Bacillus amyloliquefaciens K2 Isolate Rhizosphere
113 8052174270 Bacillus velezensis CH13 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 76.87
Metatranscriptomes 0
Isolates 23.13

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.24
Nodule 0
Rhizoplane 0
Rhizosphere 88.81
Stem 0
Stem Tuber 0
Unclassified 1.49

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0265319_1002973 3300028563 Bacteria 9015
2 JGI25151J46595_10000132 3300003187 Bacteria 99442
3 rootH2_10007569 3300003320 Bacteria 6496
4 Ga0070675_100022413 3300005354 Bacteria 5046
5 Ga0070674_100152920 3300005356 Bacteria 1743
6 Ga0070673_100174365 3300005364 Bacteria 1837
7 Ga0070706_100084219 3300005467 Bacteria 2946
8 Ga0070698_100067500 3300005471 Bacteria 3596
9 Ga0068853_100000007 3300005539 Bacteria 283307
10 Ga0070665_100015294 3300005548 Bacteria 7705
11 Ga0068855_100123373 3300005563 Bacteria 2964
12 Ga0068857_100010883 3300005577 Bacteria 7916
13 Ga0068861_100004987 3300005719 Bacteria 8944
14 Ga0068863_100170234 3300005841 Bacteria 2089
15 Ga0068858_100032139 3300005842 Bacteria 4875
16 Ga0068858_100045617 3300005842 Bacteria 4063
17 Ga0081539_10005607 3300005985 Bacteria 12638
18 Ga0075428_100015028 3300006844 Bacteria 8600
19 Ga0075428_100312853 3300006844 Bacteria 1688
20 Ga0075431_100005416 3300006847 Bacteria 12608
21 Ga0075431_100168940 3300006847 Bacteria 2248
22 Ga0075429_100006233 3300006880 Bacteria 10323
23 Ga0105240_10074509 3300009093 Bacteria 4189
24 Ga0105240_10080826 3300009093 Bacteria 3996
25 Ga0111539_10024923 3300009094 Bacteria 7333
26 Ga0105245_10029425 3300009098 Bacteria 4852
27 Ga0105245_10055615 3300009098 Bacteria 3555
28 Ga0114129_10003259 3300009147 Bacteria 22784
29 Ga0114129_10165214 3300009147 Bacteria 3021
30 Ga0105241_10022384 3300009174 Bacteria 4681
31 Ga0157370_10154336 3300013104 Unclassified 2136
32 Ga0157369_10023802 3300013105 Bacteria 6819
33 Ga0157374_10188245 3300013296 Bacteria 2018
34 Ga0157372_10327124 3300013307 Bacteria 1785
35 Ga0157376_10000658 3300014969 Bacteria 22335
36 Ga0209147_102761 3300025229 Bacteria 3968
37 Ga0207680_10102724 3300025903 Bacteria 1840
38 Ga0207684_10071407 3300025910 Bacteria 2950
39 Ga0207695_10000149 3300025913 Bacteria 207941
40 Ga0207659_10024857 3300025926 Bacteria 4020
41 Ga0207687_10033878 3300025927 Bacteria 3466
42 Ga0207691_10054246 3300025940 Bacteria 3657
43 Ga0207667_10117427 3300025949 Bacteria 2742
44 Ga0207651_10126260 3300025960 Bacteria 1950
45 Ga0207639_10000001 3300026041 Bacteria 1431562
46 Ga0207641_10153761 3300026088 Bacteria 2086
47 Ga0207674_10000506 3300026116 Bacteria 51206
48 Ga0207675_100003814 3300026118 Bacteria 14671
49 Ga0209974_10010722 3300027876 Bacteria 3088
50 Ga0207428_10049555 3300027907 Bacteria 3364
51 Ga0268266_10011265 3300028379 Bacteria 7781
52 Ga0268265_10116521 3300028380 Bacteria 2192
53 Ga0265337_1012205 3300028556 Bacteria 2929
54 Ga0265319_1012813 3300028563 Bacteria 3369
55 Ga0265323_10001794 3300028653 Bacteria 10188
56 Ga0265322_10000285 3300028654 Bacteria 21602
57 Ga0265336_10001324 3300028666 Bacteria 11561
58 Ga0265338_10000027 3300028800 Bacteria 291580
59 Ga0265338_10000169 3300028800 Bacteria 120219
60 Ga0265338_10008112 3300028800 Bacteria 12825
61 Ga0265338_10019452 3300028800 Bacteria 7204
62 Ga0265320_10000825 3300031240 Bacteria 23361
63 Ga0265320_10001468 3300031240 Bacteria 17200
64 Ga0265316_10000008 3300031344 Bacteria 261948
65 Ga0265316_10041908 3300031344 Bacteria 3661
66 Ga0307409_100171258 3300031995 Bacteria 1911
67 Ga0373937_0029008 3300036401 Bacteria 5011
68 Ga0316582_0011979 3300036647 Bacteria 4823
69 Ga0316584_0027430 3300036712 Unclassified 4192
70 Ga0395901_0018344 3300038443 Bacteria 7144
71 Ga0451855_0274063 3300041511 Bacteria 2454
72 Ga0451577_0000354 3300042876 Bacteria 85568
73 Ga0453684_0002277 3300044712 Bacteria 47332
74 Ga0453684_0027188 3300044712 Bacteria 8215
75 Ga0453684_0201971 3300044712 Bacteria 2316
76 Ga0451576_0000141 3300045051 Bacteria 183004
77 Ga0451576_0001299 3300045051 Bacteria 43263
78 Ga0451576_0016159 3300045051 Bacteria 8247
79 Ga0495630_0000777 3300046517 Bacteria 22415
80 Ga0495624_0004525 3300046690 Bacteria 10166
81 Ga0495684_0010674 3300047471 Bacteria 7101
82 Ga0496126_0062054 3300048929 Bacteria 3355
83 Ga0501033_0079043 3300049570 Bacteria 2414
84 Ga0501034_0000381 3300049571 Bacteria 75686
85 Ga0501034_0001392 3300049571 Bacteria 32520
86 Ga0501037_0001907 3300049573 Bacteria 15144
87 Ga0501037_0035795 3300049573 Bacteria 3659
88 Ga0501038_0000457 3300049574 Bacteria 35723
89 Ga0501047_0035219 3300049581 Bacteria 4836
90 Ga0501070_0038597 3300049586 Bacteria 3985
91 Ga0501070_0128917 3300049586 Bacteria 2090
92 Ga0501080_0116233 3300049742 Bacteria 2480
93 Ga0501083_0037765 3300049744 Bacteria 3287
94 Ga0501044_0000291 3300049823 Bacteria 63806
95 nmdc:mga05p37_20_c1 3300050507 Bacteria 127415
96 nmdc:mga0qj67_25317_c1 3300050509 Bacteria 4584
97 nmdc:mga0qj67_49573_c1 3300050509 Bacteria 3319
98 nmdc:mga06r32_45947_c1 3300050510 Bacteria 4165
99 nmdc:mga06r32_95269_c1 3300050510 Bacteria 2913
100 nmdc:mga08y16_18545_c1 3300050511 Bacteria 7332
101 nmdc:mga0a205_92379_c1 3300050515 Bacteria 2924
102 Ga0500616_0000023 3300053153 Bacteria 456171
103 Ga0501082_0100316 3300060353 Bacteria 2504
104 2511699421 2511231119 Bacteria 4019861
105 2540606650 2540341094 Bacteria 4061186
106 2545556367 2545555800 Bacteria 4222588
107 2578929803 2576861599 Bacteria 4217202
108 2631984104 2630968484 Bacteria 3876276
109 2651532832 2648501850 Bacteria 3975476
110 2674419722 2671180844 Bacteria 4164150
111 2687238700 2684623219 Bacteria 8442773
112 2695627371 2695420354 Bacteria 3922431
113 2717916836 2716884898 Bacteria 3928789
114 2809054895 2808606399 Bacteria 4021018
115 2817479778 2816332295 Bacteria 4352468
116 2860839079 2860837431 Bacteria 4202080
117 2877770193 2877768649 Bacteria 3957164
118 2880171197 2880169592 Bacteria 3900066
119 2897111214 2897109615 Bacteria 4009619
120 2904560735 2904560550 Bacteria 4029838
121 2962292507 2962290636 Bacteria 4072939
122 2969138474 2969136845 Bacteria 3923176
123 2969142642 2969141011 Bacteria 4118468
124 2969766477 2969765954 Bacteria 4216713
125 2969772270 2969770375 Bacteria 4271280
126 2971894960 2971893375 Bacteria 3929648
127 2980494269 2980492589 Bacteria 4072961
128 3006860112 3006858327 Bacteria 4317835
129 3006880718 3006879489 Bacteria 4064221
130 8022630817 8022630665 Bacteria 3886130
131 8022653408 8022653035 Bacteria 4035078
132 8036737169 8036736890 Bacteria 2944828
133 8051952910 8051952484 Bacteria 3926774
134 8052174591 8052174270 Bacteria 3881265
135 Ga0265319_1002973
136 JGI25151J46595_10000132
137 rootH2_10007569
138 Ga0070675_100022413
139 Ga0070674_100152920
140 Ga0070673_100174365
141 Ga0070706_100084219
142 Ga0070698_100067500
143 Ga0068853_100000007
144 Ga0070665_100015294
145 Ga0068855_100123373
146 Ga0068857_100010883
147 Ga0068861_100004987
148 Ga0068863_100170234
149 Ga0068858_100032139
150 Ga0068858_100045617
151 Ga0081539_10005607
152 Ga0075428_100015028
153 Ga0075428_100312853
154 Ga0075431_100005416
155 Ga0075431_100168940
156 Ga0075429_100006233
157 Ga0105240_10074509
158 Ga0105240_10080826
159 Ga0111539_10024923
160 Ga0105245_10029425
161 Ga0105245_10055615
162 Ga0114129_10003259
163 Ga0114129_10165214
164 Ga0105241_10022384
165 Ga0157370_10154336
166 Ga0157369_10023802
167 Ga0157374_10188245
168 Ga0157372_10327124
169 Ga0157376_10000658
170 Ga0209147_102761
171 Ga0207680_10102724
172 Ga0207684_10071407
173 Ga0207695_10000149
174 Ga0207659_10024857
175 Ga0207687_10033878
176 Ga0207691_10054246
177 Ga0207667_10117427
178 Ga0207651_10126260
179 Ga0207639_10000001
180 Ga0207641_10153761
181 Ga0207674_10000506
182 Ga0207675_100003814
183 Ga0209974_10010722
184 Ga0207428_10049555
185 Ga0268266_10011265
186 Ga0268265_10116521
187 Ga0265337_1012205
188 Ga0265319_1012813
189 Ga0265323_10001794
190 Ga0265322_10000285
191 Ga0265336_10001324
192 Ga0265338_10000027
193 Ga0265338_10000169
194 Ga0265338_10008112
195 Ga0265338_10019452
196 Ga0265320_10000825
197 Ga0265320_10001468
198 Ga0265316_10000008
199 Ga0265316_10041908
200 Ga0307409_100171258
201 Ga0373937_0029008
202 Ga0316582_0011979
203 Ga0316584_0027430
204 Ga0395901_0018344
205 Ga0451855_0274063
206 Ga0451577_0000354
207 Ga0453684_0002277
208 Ga0453684_0027188
209 Ga0453684_0201971
210 Ga0451576_0000141
211 Ga0451576_0001299
212 Ga0451576_0016159
213 Ga0495630_0000777
214 Ga0495624_0004525
215 Ga0495684_0010674
216 Ga0496126_0062054
217 Ga0501033_0079043
218 Ga0501034_0000381
219 Ga0501034_0001392
220 Ga0501037_0001907
221 Ga0501037_0035795
222 Ga0501038_0000457
223 Ga0501047_0035219
224 Ga0501070_0038597
225 Ga0501070_0128917
226 Ga0501080_0116233
227 Ga0501083_0037765
228 Ga0501044_0000291
229 nmdc:mga05p37_20_c1
230 nmdc:mga0qj67_25317_c1
231 nmdc:mga0qj67_49573_c1
232 nmdc:mga06r32_45947_c1
233 nmdc:mga06r32_95269_c1
234 nmdc:mga08y16_18545_c1
235 nmdc:mga0a205_92379_c1
236 Ga0500616_0000023
237 Ga0501082_0100316
238 2511699421
239 2540606650
240 2545556367
241 2578929803
242 2631984104
243 2651532832
244 2674419722
245 2687238700
246 2695627371
247 2717916836
248 2809054895
249 2817479778
250 2860839079
251 2877770193
252 2880171197
253 2897111214
254 2904560735
255 2962292507
256 2969138474
257 2969142642
258 2969766477
259 2969772270
260 2971894960
261 2980494269
262 3006860112
263 3006880718
264 8022630817
265 8022653408
266 8036737169
267 8051952910
268 8052174591

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02875

Mur_ligase_C

Mur ligase, glutamate ligase domain

371

497

0.96

PF08245

Mur_ligase_M

Mur ligase middle domain

145

349

0.94

PF01225

Mur_ligase

Mur ligase family, catalytic domain

59

133

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
2xja-assembly3.cif.gz_C structure of mure from m.tuberculosis with dipeptide and adp 0.9146 24 488
2xja-assembly1.cif.gz_A structure of mure from m.tuberculosis with dipeptide and adp 0.9071 24 488
4bub-assembly2.cif.gz_B crystal structure of mure ligase from thermotoga maritima in complex with adp 0.9063 1 491
2wtz-assembly2.cif.gz_B mure ligase of mycobacterium tuberculosis 0.9049 24 489
4bub-assembly2.cif.gz_B crystal structure of mure ligase from thermotoga maritima in complex with adp 0.9045 1 491
ID Description Score Start End Superfamily
4c13A02 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Mur-like, catalytic domain 0.9655 99 337 3.40.1190.10
4c13A02 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Mur-like, catalytic domain 0.9576 99 337 3.40.1190.10
af_I1KPB4_561_737_3.90.190.20 Alpha Beta;Alpha-Beta Complex;Protein-Tyrosine Phosphatase; Chain A;Mur ligase, C-terminal domain 0.9487 340 490 3.90.190.20
af_P9WJL1_1_85_3.40.1390.10 Alpha Beta;3-Layer(aba) Sandwich;Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1;MurE/MurF, N-terminal domain 0.9413 25 81 3.40.1390.10
1e8cB03 Alpha Beta;Alpha-Beta Complex;Protein-Tyrosine Phosphatase; Chain A;Mur ligase, C-terminal domain 0.9363 339 477 3.90.190.20
ID Description Score Start End GO Terms
AF-A0A2N1ZZU6-F1-model_v4 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) (Meso-A2pm-adding enzyme) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase) (UDP-MurNAc-tripeptide synthetase) (UDP-N-acetylmuramyl-tripeptide synthetase) 0.9717 1 487 GO:0000287
GO:0005524
GO:0005737
GO:0008360
GO:0008765
GO:0009252
GO:0051301
GO:0071555
AF-A0A2V6AFD5-F1-model_v4 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 0.9687 1 170 GO:0005524
GO:0009058
GO:0016881
AF-A0A2N1ZZU6-F1-model_v4 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) (Meso-A2pm-adding enzyme) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase) (UDP-MurNAc-tripeptide synthetase) (UDP-N-acetylmuramyl-tripeptide synthetase) 0.9677 1 487 GO:0000287
GO:0005524
GO:0005737
GO:0008360
GO:0008765
GO:0009252
GO:0051301
GO:0071555
AF-A0A496UJS6-F1-model_v4 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 0.9664 294 488 GO:0005524
GO:0009058
GO:0016881
AF-A0A3M1B732-F1-model_v4 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) (Meso-A2pm-adding enzyme) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase) (UDP-MurNAc-tripeptide synthetase) (UDP-N-acetylmuramyl-tripeptide synthetase) 0.9654 1 489 GO:0000287
GO:0005524
GO:0005737
GO:0008360
GO:0008765
GO:0009252
GO:0051301
GO:0071555

Map