F164496

General Info

Members Datasets Scaffolds Average Seq Length
135 116 109 327

Family's Representative Sequence

Representative Sequence 3300048911|Ga0496108_0013898|Ga0496108_0013898_1574_2632
Length 352
Sequence MKDQVTDRFPTKGALVPAAITEDRSIRWGIIGAGGIADTVCRDINLTAGNVVVAVAARDAGRAAQFATRHGATRSYSSYESLVADPEVDVVYVATTHPNHEPHALLAIEAGKSVLIEKPVGLNAAQARRVFAAAGKADVFAMEAMWMRTNPLIRRAGELIADGAIGELRGVRMEFGLGIPFDPRHRLYDINNGGGALLDLGVYPASFAFHYLGAPDELLVYGELAPTGVDDTVAMEWLYAGVPRAQLWCSVSSAAPNEAAVFGTTGWITFAAPALRPSGLTVQSGGTNYRVADPIAGQGTGYGPEIEEVERCVRAGITESPLVPHADTIAILELLDQARAGLGVVYPGEAVQ

Samples

Sample ID Description Type Environment
1 2772190715 Micromonospora chokoriensis NRRL B-24750 Isolate Unclassified
2 2831935698 Jishengella sp. AZ1-13 Isolate Unclassified
3 2832004796 Micromonospora endophytica JCM 18317 Isolate Unclassified
4 2855670206 Micromonospora noduli Lupac 07 Isolate Nodule
5 2855676851 Micromonospora saelicesensis GAR05 Isolate Unclassified
6 2857288857 Micromonospora noduli ONO23 Isolate Unclassified
7 2858848962 Micromonospora saelicesensis GAR06 Isolate Unclassified
8 2858868258 Micromonospora sp. MH33 Isolate Unclassified
9 2858882152 Micromonospora noduli MED15 Isolate Nodule
10 2858888857 Micromonospora saelicesensis Lupac 06 Isolate Unclassified
11 2858895516 Micromonospora saelicesensis PSN13 Isolate Unclassified
12 2866065130 Micromonospora endophytica DSM 45430 Isolate Unclassified
13 2867507094 Micromonospora zingiberis PLAI 1-1 Isolate Unclassified
14 2869048445 Micromonospora saelicesensis PSN01 Isolate Unclassified
15 2869061728 Micromonospora noduli ONO86 Isolate Unclassified
16 2869068681 Micromonospora noduli GUI43 Isolate Unclassified
17 2880489317 Micromonospora ureilytica DSM 101692 Isolate Unclassified
18 2880495981 Micromonospora vinacea DSM 101695 Isolate Unclassified
19 2902582711 Micromonospora sp. AP08 Isolate Unclassified
20 2929219909 Micromonospora sp. R-75348 Hybrid assembly Isolate Unclassified
21 2929226422 Micromonospora sp. R-74116 Hybrid assembly Isolate Unclassified
22 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
23 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
24 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
25 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
26 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
27 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
28 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
29 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
30 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
31 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
32 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
33 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
34 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
35 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
36 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
37 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
38 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
39 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
40 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
41 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
42 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
43 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
44 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
45 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
46 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
47 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
48 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
49 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
50 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
51 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
52 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
72 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
73 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
74 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
75 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
76 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
77 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
78 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
79 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
80 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
81 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
82 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
83 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
84 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
85 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
86 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
87 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
88 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
89 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
90 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
91 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
92 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
93 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
94 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
95 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
96 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
97 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
98 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
99 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
100 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
101 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
102 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
103 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
104 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
105 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
106 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
107 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
108 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
109 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
110 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
111 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
112 8003830390 Micromonospora parastrephiae STR1_7 Isolate Rhizosphere
113 8003870546 Micromonospora tarensis STR1s_6 Isolate Rhizosphere
114 8054704163 Micromonospora trifolii NIE79 Isolate Nodule
115 8054727385 Micromonospora alfalfae MED01 Isolate Nodule
116 8054734606 Micromonospora hortensis NIE111 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 80.74
Metatranscriptomes 0
Isolates 19.26

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.7
Nodule 3.7
Rhizoplane 6.67
Rhizosphere 64.44
Stem 0
Stem Tuber 0
Unclassified 21.48

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24735J21928_10017717 3300002067 Bacteria 2201
2 Ga0070666_10032895 3300005335 Bacteria 3428
3 Ga0070668_100047310 3300005347 Bacteria 3307
4 Ga0070671_100009197 3300005355 Bacteria 7935
5 Ga0070667_100002139 3300005367 Bacteria 17394
6 Ga0070714_100000906 3300005435 Bacteria 20969
7 Ga0070700_100000077 3300005441 Bacteria 66494
8 Ga0070681_10288804 3300005458 Bacteria 1550
9 Ga0070665_100022631 3300005548 Bacteria 6328
10 Ga0068859_100006460 3300005617 Bacteria 11892
11 Ga0068863_100000263 3300005841 Bacteria 54959
12 Ga0068858_100071511 3300005842 Bacteria 3218
13 Ga0068860_100000067 3300005843 Bacteria 180176
14 Ga0075369_10058397 3300006186 Bacteria 1680
15 Ga0075428_100045451 3300006844 Bacteria 4825
16 Ga0075430_100048418 3300006846 Bacteria 3589
17 Ga0075431_100019128 3300006847 Bacteria 6979
18 Ga0075429_100051586 3300006880 Bacteria 3579
19 Ga0075429_100120595 3300006880 Bacteria 2292
20 Ga0097620_100006460 3300006931 Bacteria 11892
21 Ga0105240_10067024 3300009093 Bacteria 4451
22 Ga0105245_10156443 3300009098 Bacteria 2159
23 Ga0105247_10006972 3300009101 Bacteria 6958
24 Ga0114129_10001766 3300009147 Bacteria 29481
25 Ga0105248_10246384 3300009177 Bacteria 2011
26 Ga0105237_10070805 3300009545 Bacteria 3483
27 Ga0105237_10075116 3300009545 Bacteria 3371
28 Ga0105249_10089713 3300009553 Bacteria 2873
29 Ga0105239_10358338 3300010375 Bacteria 1647
30 Ga0157372_10000373 3300013307 Bacteria 49502
31 Ga0182008_10115261 3300014497 Bacteria 1333
32 Ga0157379_10008148 3300014968 Bacteria 9102
33 Ga0207710_10002181 3300025900 Bacteria 9199
34 Ga0207680_10020584 3300025903 Bacteria 3555
35 Ga0207647_10123601 3300025904 Bacteria 1524
36 Ga0207695_10102266 3300025913 Bacteria 2858
37 Ga0207671_10206021 3300025914 Bacteria 1537
38 Ga0207663_10290650 3300025916 Bacteria 1217
39 Ga0207694_10188623 3300025924 Bacteria 1674
40 Ga0207687_10119397 3300025927 Bacteria 1969
41 Ga0207664_10000002 3300025929 Bacteria 657053
42 Ga0207644_10022727 3300025931 Bacteria 4287
43 Ga0207667_10017723 3300025949 Bacteria 8010
44 Ga0207712_10203773 3300025961 Bacteria 1570
45 Ga0207668_10063748 3300025972 Bacteria 2601
46 Ga0207658_10013844 3300025986 Bacteria 5519
47 Ga0207703_10053711 3300026035 Bacteria 3275
48 Ga0207708_10000032 3300026075 Bacteria 153949
49 Ga0207641_10002599 3300026088 Bacteria 16574
50 Ga0268266_10007116 3300028379 Bacteria 10147
51 Ga0268264_10000114 3300028381 Bacteria 203211
52 Ga0307517_10221025 3300028786 Bacteria 1151
53 Ga0265338_10094366 3300028800 Bacteria 2462
54 Ga0265340_10000537 3300031247 Bacteria 20931
55 Ga0265340_10004246 3300031247 Bacteria 8030
56 Ga0265327_10000107 3300031251 Bacteria 183770
57 Ga0307513_10001986 3300031456 Bacteria 28948
58 Ga0307513_10304179 3300031456 Bacteria 1360
59 Ga0436364_0833000 3300037853 Bacteria 1941
60 Ga0466972_0022923 3300044658 Bacteria 3107
61 Ga0466966_0011716 3300044684 Bacteria 5814
62 Ga0466966_0110704 3300044684 Bacteria 1693
63 Ga0466961_0014823 3300044693 Bacteria 5009
64 Ga0466961_0022452 3300044693 Bacteria 4059
65 Ga0466961_0078052 3300044693 Bacteria 2097
66 Ga0466963_0057832 3300044694 Bacteria 2583
67 Ga0466963_0079405 3300044694 Bacteria 2220
68 Ga0466971_0029699 3300044719 Bacteria 2445
69 Ga0466970_0013226 3300044765 Bacteria 4230
70 Ga0466970_0014822 3300044765 Bacteria 4006
71 Ga0466957_0026087 3300044842 Bacteria 3465
72 Ga0466957_0237433 3300044842 Bacteria 1209
73 Ga0466960_0132603 3300044901 Bacteria 1316
74 Ga0466959_0035201 3300045049 Bacteria 3705
75 Ga0466958_0006833 3300045836 Bacteria 6239
76 Ga0466958_0022257 3300045836 Bacteria 3711
77 Ga0466958_0185459 3300045836 Bacteria 1321
78 Ga0466967_0021218 3300045976 Bacteria 5269
79 Ga0466967_0050736 3300045976 Bacteria 3634
80 Ga0495629_0338969 3300046459 Bacteria 1027
81 Ga0495640_0119265 3300046533 Bacteria 1717
82 Ga0495613_0219038 3300046689 Bacteria 1337
83 Ga0495680_0262569 3300047322 Bacteria 1221
84 Ga0496102_0006658 3300048905 Bacteria 9876
85 Ga0496102_0020916 3300048905 Bacteria 5784
86 Ga0496103_0001429 3300048906 Bacteria 16013
87 Ga0496103_0022379 3300048906 Bacteria 3806
88 Ga0496104_0267265 3300048907 Bacteria 1623
89 Ga0496108_0013898 3300048911 Bacteria 6567
90 Ga0496113_0020743 3300048916 Bacteria 4626
91 Ga0496114_0098128 3300048917 Bacteria 2497
92 Ga0496115_0043466 3300048918 Bacteria 3584
93 Ga0496116_0152164 3300048919 Bacteria 1283
94 Ga0496117_0017202 3300048920 Bacteria 6051
95 Ga0496119_0000159 3300048922 Bacteria 93750
96 Ga0496119_0022884 3300048922 Bacteria 4453
97 Ga0496120_0037529 3300048923 Bacteria 2874
98 Ga0496126_0122183 3300048929 Bacteria 2257
99 Ga0501044_0300025 3300049823 Bacteria 1536
100 nmdc:mga00v17_220621_c1 3300050491 Bacteria 1227
101 nmdc:mga05p37_34436_c1 3300050507 Bacteria 6204
102 nmdc:mga09592_23951_c1 3300050508 Bacteria 5047
103 nmdc:mga0qj67_53491_c1 3300050509 Bacteria 3197
104 nmdc:mga0sz30_6386_c1 3300050516 Bacteria 4375
105 Ga0500616_0000755 3300053153 Bacteria 37233
106 Ga0500616_0022113 3300053153 Bacteria 3555
107 Ga0466962_0004066 3300061719 Bacteria 7002
108 Ga0466962_0072832 3300061719 Bacteria 1641
109 Ga0466962_0157297 3300061719 Bacteria 1104

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300028800 Ga0265338_10094366 Ga0265338_100943662 303
2 3300044684 Ga0466966_0011716 Ga0466966_0011716_3501_4493 308
3 3300044765 Ga0466970_0013226 Ga0466970_0013226_2887_3879 308
4 3300031247 Ga0265340_10004246 Ga0265340_100042464 309
5 3300005617 Ga0068859_100006460 Ga0068859_1000064605 310
6 3300006931 Ga0097620_100006460 Ga0097620_1000064605 310
7 3300009101 Ga0105247_10006972 Ga0105247_100069724 310
8 3300025900 Ga0207710_10002181 Ga0207710_100021815 310
9 3300048905 Ga0496102_0020916 Ga0496102_0020916_1380_2360 310
10 3300048906 Ga0496103_0001429 Ga0496103_0001429_12142_13122 310
11 3300048919 Ga0496116_0152164 Ga0496116_0152164_13_993 310
12 3300048920 Ga0496117_0017202 Ga0496117_0017202_4825_5805 310
13 3300048922 Ga0496119_0022884 Ga0496119_0022884_2928_3908 310
14 3300031456 Ga0307513_10304179 Ga0307513_103041792 313
15 3300050516 nmdc:mga0sz30_6386_c1 nmdc:mga0sz30_6386_c1_686_1651 316
16 3300006186 Ga0075369_10058397 Ga0075369_100583972 317
17 iso_pu_bacteria 2772190715 2772645441 318
18 iso_pu_bacteria 2831935698 2831937148 318
19 iso_pu_bacteria 2832004796 2832010151 318
20 iso_pu_bacteria 2855670206 2855674856 318
21 iso_pu_bacteria 2855676851 2855679411 318
22 iso_pu_bacteria 2857288857 2857290179 318
23 iso_pu_bacteria 2858848962 2858850103 318
24 iso_pu_bacteria 2858868258 2858873377 318
25 iso_pu_bacteria 2858882152 2858885593 318
26 iso_pu_bacteria 2858888857 2858892062 318
27 iso_pu_bacteria 2858895516 2858900215 318
28 iso_pu_bacteria 2866065130 2866065826 318
29 iso_pu_bacteria 2867507094 2867510682 318
30 iso_pu_bacteria 2869048445 2869054978 318
31 iso_pu_bacteria 2869061728 2869063592 318
32 iso_pu_bacteria 2869068681 2869073467 318
33 iso_pu_bacteria 2880489317 2880494961 318
34 iso_pu_bacteria 2880495981 2880497371 318
35 iso_pu_bacteria 2902582711 2902584621 318
36 iso_pu_bacteria 2929219909 2929225932 318
37 iso_pu_bacteria 2929226422 2929232593 318
38 iso_pu_bacteria 8003830390 8003833288 318
39 iso_pu_bacteria 8003870546 8003877486 318
40 iso_pu_bacteria 8054704163 8054704315 318
41 iso_pu_bacteria 8054727385 8054731595 318
42 iso_pu_bacteria 8054734606 8054739961 318
43 3300005335 Ga0070666_10032895 Ga0070666_100328953 322
44 3300005347 Ga0070668_100047310 Ga0070668_1000473103 322
45 3300005355 Ga0070671_100009197 Ga0070671_1000091974 322
46 3300005367 Ga0070667_100002139 Ga0070667_10000213913 322
47 3300005548 Ga0070665_100022631 Ga0070665_1000226313 322
48 3300005841 Ga0068863_100000263 Ga0068863_10000026343 322
49 3300005842 Ga0068858_100071511 Ga0068858_1000715112 322
50 3300005843 Ga0068860_100000067 Ga0068860_100000067150 322
51 3300009177 Ga0105248_10246384 Ga0105248_102463843 322
52 3300009553 Ga0105249_10089713 Ga0105249_100897132 322
53 3300014968 Ga0157379_10008148 Ga0157379_100081489 322
54 3300025903 Ga0207680_10020584 Ga0207680_100205842 322
55 3300025931 Ga0207644_10022727 Ga0207644_100227272 322
56 3300025961 Ga0207712_10203773 Ga0207712_102037733 322
57 3300025972 Ga0207668_10063748 Ga0207668_100637482 322
58 3300025986 Ga0207658_10013844 Ga0207658_100138442 322
59 3300026035 Ga0207703_10053711 Ga0207703_100537111 322
60 3300026088 Ga0207641_10002599 Ga0207641_100025999 322
61 3300028379 Ga0268266_10007116 Ga0268266_100071165 322
62 3300028381 Ga0268264_10000114 Ga0268264_1000011429 322
63 3300049823 Ga0501044_0300025 Ga0501044_0300025_357_1334 322
64 3300050491 nmdc:mga00v17_220621_c1 nmdc:mga00v17_220621_c1_201_1169 322
65 3300044658 Ga0466972_0022923 Ga0466972_0022923_1744_2718 323
66 3300014497 Ga0182008_10115261 Ga0182008_101152611 325
67 3300046459 Ga0495629_0338969 Ga0495629_0338969_14_1006 325
68 3300046533 Ga0495640_0119265 Ga0495640_0119265_361_1353 325
69 3300046689 Ga0495613_0219038 Ga0495613_0219038_273_1265 325
70 3300047322 Ga0495680_0262569 Ga0495680_0262569_207_1199 325
71 3300048918 Ga0496115_0043466 Ga0496115_0043466_1764_2756 325
72 3300053153 Ga0500616_0000755 Ga0500616_0000755_25850_26836 325
73 3300045976 Ga0466967_0021218 Ga0466967_0021218_3543_4532 326
74 3300006880 Ga0075429_100051586 Ga0075429_1000515862 327
75 3300009098 Ga0105245_10156443 Ga0105245_101564433 327
76 3300025904 Ga0207647_10123601 Ga0207647_101236013 327
77 3300025927 Ga0207687_10119397 Ga0207687_101193973 327
78 3300025949 Ga0207667_10017723 Ga0207667_100177234 327
79 3300031251 Ga0265327_10000107 Ga0265327_10000107123 327
80 3300037853 Ga0436364_0833000 Ga0436364_0833000_927_1922 327
81 3300048905 Ga0496102_0006658 Ga0496102_0006658_8419_9408 327
82 3300048906 Ga0496103_0022379 Ga0496103_0022379_2022_3011 327
83 3300048907 Ga0496104_0267265 Ga0496104_0267265_327_1322 327
84 3300005441 Ga0070700_100000077 Ga0070700_10000007755 328
85 3300006844 Ga0075428_100045451 Ga0075428_1000454516 328
86 3300006846 Ga0075430_100048418 Ga0075430_1000484184 328
87 3300006847 Ga0075431_100019128 Ga0075431_1000191285 328
88 3300006880 Ga0075429_100120595 Ga0075429_1001205952 328
89 3300009147 Ga0114129_10001766 Ga0114129_1000176618 328
90 3300026075 Ga0207708_10000032 Ga0207708_10000032139 328
91 3300031247 Ga0265340_10000537 Ga0265340_1000053716 328
92 3300031456 Ga0307513_10001986 Ga0307513_1000198619 328
93 3300050507 nmdc:mga05p37_34436_c1 nmdc:mga05p37_34436_c1_2301_3299 328
94 3300050508 nmdc:mga09592_23951_c1 nmdc:mga09592_23951_c1_155_1153 328
95 3300050509 nmdc:mga0qj67_53491_c1 nmdc:mga0qj67_53491_c1_2173_3171 328
96 3300053153 Ga0500616_0022113 Ga0500616_0022113_75_1079 328
97 3300005458 Ga0070681_10288804 Ga0070681_102888041 329
98 3300009093 Ga0105240_10067024 Ga0105240_100670242 329
99 3300009545 Ga0105237_10070805 Ga0105237_100708054 329
100 3300013307 Ga0157372_10000373 Ga0157372_1000037339 329
101 3300025913 Ga0207695_10102266 Ga0207695_101022662 329
102 3300025916 Ga0207663_10290650 Ga0207663_102906501 329
103 3300025924 Ga0207694_10188623 Ga0207694_101886233 329
104 3300044693 Ga0466961_0022452 Ga0466961_0022452_109_1104 329
105 3300044693 Ga0466961_0078052 Ga0466961_0078052_1073_2071 329
106 3300044694 Ga0466963_0057832 Ga0466963_0057832_1451_2446 329
107 3300044694 Ga0466963_0079405 Ga0466963_0079405_612_1613 329
108 3300044719 Ga0466971_0029699 Ga0466971_0029699_462_1460 329
109 3300044765 Ga0466970_0014822 Ga0466970_0014822_1871_2866 329
110 3300044842 Ga0466957_0026087 Ga0466957_0026087_48_1046 329
111 3300044842 Ga0466957_0237433 Ga0466957_0237433_193_1188 329
112 3300044901 Ga0466960_0132603 Ga0466960_0132603_201_1199 329
113 3300045049 Ga0466959_0035201 Ga0466959_0035201_1126_2121 329
114 3300045836 Ga0466958_0006833 Ga0466958_0006833_1772_2767 329
115 3300045836 Ga0466958_0022257 Ga0466958_0022257_2297_3295 329
116 3300045836 Ga0466958_0185459 Ga0466958_0185459_11_1021 329
117 3300045976 Ga0466967_0050736 Ga0466967_0050736_2385_3386 329
118 3300048916 Ga0496113_0020743 Ga0496113_0020743_1292_2311 329
119 3300061719 Ga0466962_0004066 Ga0466962_0004066_3739_4737 329
120 3300061719 Ga0466962_0072832 Ga0466962_0072832_479_1474 329
121 3300061719 Ga0466962_0157297 Ga0466962_0157297_51_1055 329
122 3300005435 Ga0070714_100000906 Ga0070714_10000090617 330
123 3300009545 Ga0105237_10075116 Ga0105237_100751162 330
124 3300010375 Ga0105239_10358338 Ga0105239_103583383 330
125 3300025914 Ga0207671_10206021 Ga0207671_102060212 330
126 3300025929 Ga0207664_10000002 Ga0207664_1000000218 330
127 3300028786 Ga0307517_10221025 Ga0307517_102210251 330
128 3300044684 Ga0466966_0110704 Ga0466966_0110704_192_1205 330
129 3300044693 Ga0466961_0014823 Ga0466961_0014823_3679_4692 330
130 3300048911 Ga0496108_0013898 Ga0496108_0013898_1574_2632 330
131 3300048917 Ga0496114_0098128 Ga0496114_0098128_1394_2452 330
132 3300048922 Ga0496119_0000159 Ga0496119_0000159_79272_80291 330
133 3300048923 Ga0496120_0037529 Ga0496120_0037529_241_1260 330
134 3300002067 JGI24735J21928_10017717 JGI24735J21928_100177172 331
135 3300048929 Ga0496126_0122183 Ga0496126_0122183_129_1136 331

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01408

GFO_IDH_MocA

Oxidoreductase family, NAD-binding Rossmann fold

26

145

0.97

PF22725

GFO_IDH_MocA_C3

GFO/IDH/MocA C-terminal domain

153

269

0.94

PF03447

NAD_binding_3

Homoserine dehydrogenase, NAD binding domain

32

142

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
3e9m-assembly2.cif.gz_C-2 crystal structure of an oxidoreductase from enterococcus faecalis 0.9516 6 321
3e9m-assembly2.cif.gz_C-2 crystal structure of an oxidoreductase from enterococcus faecalis 0.9371 6 321
3evn-assembly1.cif.gz_A crystal structure of putative oxidoreductase from streptococcus agalactiae 2603v/r 0.9324 7 323
2o48-assembly1.cif.gz_X crystal structure of mammalian dimeric dihydrodiol dehydrogenase 0.9321 7 329
4had-assembly1.cif.gz_D crystal structure of probable oxidoreductase protein from rhizobium etli cfn 42 0.9204 5 325
ID Description Score Start End Superfamily
af_D4A903_1_122_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9869 6 124 3.40.50.720
af_M9PE54_6_126_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9816 7 124 3.40.50.720
af_Q9VJH7_91_211_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9795 7 124 3.40.50.720
3e9mA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9681 5 122 3.40.50.720
af_Q9UT60_9_157_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9593 7 141 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A2W4IVS3-F1-model_v4 Gfo/Idh/MocA family oxidoreductase 0.9869 18 330 GO:0000166
GO:0016491
AF-A0A6B0WLV2-F1-model_v4 Gfo/Idh/MocA family oxidoreductase 0.9787 5 325 GO:0000166
GO:0016491
AF-A0A1V5TLY6-F1-model_v4 1,5-anhydro-D-fructose reductase (EC 1.1.1.292) 0.9767 5 331 GO:0000166
GO:0033712
AF-A0A4P5T729-F1-model_v4 Dehydrogenase 0.9754 6 327 GO:0000166
GO:0016491
AF-A0A351MHT5-F1-model_v4 Dehydrogenase 0.9744 1 132 GO:0000166
GO:0016491

Feature Viewer

pLDDT pTM Quality
96.22 0.93 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map