F164995

General Info

Members Datasets Scaffolds Average Seq Length
135 102 134 676

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|8054609563|8054611354
Length 732
Sequence LADWCFRRRRLVVVSWLGALVVSFLLAGALGGEFRQDYLQPGSESRAASQTLEDTFPQRSGDTVQVVLHAEGGVTSSEVQARAEALFAEVARNEDVVGIASPFVAGGATQISADGTTAYADVALSSTVNEFTPAQAAALVDPILEAGDDTLQVEVGGAVAALSQAPPVGSEVIGLVAAAIILLVTFGSVVAMGLPLVTALFGLGVAMALGEVLRRVVDVPDWAPATAAMVGIGVGIDYALLIVTRYRTSLAAGQDPRRATATAIATAGRSVLFAGITVVISMLGILLMGQPAMNGFAFTVVLAVVVTVAASLTLLPAILGFAGHGIERLHVPFVSRQVRPYDASRWFRWSRFIQRRPWIAAIGGLAVLLALAAPFLGIRFGFPDAENDAPTSTTRQAYDLLADGFGPGFSAPMVLTVQGAAGDLKDAADQLGASLGDVEGVAYVAPAVVNESGDTAVLSLTPATSPQDAASEDLVDLLRDEEIPTATASTDLTVHVGGMIAANVDSTRGTADRLPFFFGGVLLVSFLLLMMVFGSVLVPLKAVVMNVLATGAAFGVLALATGGGPLGDLVGIPEATPVPIQLPIGIFAILFGLSMDYEVFLLSRIKEEYDRTGDNARAVADGLAKSARVITASAAIMVTVFFSFVLGESVLTKMFGLGLGAAVLIDATLVRMVLVPATMELLGDRNWWLPSWLDRLLPHIDAEGRGMIDVPEGEPEQGLTPVPVPAGSGAPS

Samples

Sample ID Description Type Environment
1 3300002074 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S1 Metagenome Rhizosphere
2 3300002239 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S2 Metagenome Rhizosphere
3 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
4 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
5 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
6 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
7 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
8 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
9 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
10 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
11 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
12 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
13 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
14 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
15 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
18 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
19 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
20 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
21 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
22 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
23 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
24 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
25 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
26 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
27 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
28 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
29 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
30 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
31 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
32 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
33 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
34 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
35 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
36 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
37 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
56 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
57 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
58 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
59 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
60 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
61 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
62 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
63 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
64 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
65 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
66 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
67 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
68 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
69 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
70 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
71 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
72 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
73 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
74 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
75 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
76 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
77 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
78 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
79 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
80 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
81 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
82 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
83 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
84 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
85 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
86 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
87 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
88 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
89 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
90 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
91 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
92 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
93 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
94 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
95 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
96 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
97 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
98 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
99 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
100 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
101 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
102 8054609563 Nocardioides astragali CGMCC 4.7327 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 99.26
Metatranscriptomes 0
Isolates 0.74

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0.74
Rhizoplane 9.63
Rhizosphere 89.63
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24748J21848_1000391 3300002074 Bacteria 4953
2 JGI24034J26672_10000379 3300002239 Bacteria 5746
3 JGI25407J50210_10000215 3300003373 Bacteria 9891
4 JGI25407J50210_10007144 3300003373 Bacteria 2795
5 Ga0070682_100000045 3300005337 Bacteria 131960
6 Ga0070682_100041709 3300005337 Bacteria 2830
7 Ga0070668_100005273 3300005347 Bacteria 9587
8 Ga0070675_100000070 3300005354 Bacteria 59599
9 Ga0070674_100000003 3300005356 Bacteria 258221
10 Ga0070688_100000004 3300005365 Bacteria 94872
11 Ga0070659_100004757 3300005366 Bacteria 9702
12 Ga0070667_100002983 3300005367 Bacteria 14547
13 Ga0070713_100000009 3300005436 Bacteria 153056
14 Ga0070711_100022004 3300005439 Bacteria 4127
15 Ga0070678_100005338 3300005456 Bacteria 7416
16 Ga0070685_10000060 3300005466 Bacteria 63737
17 Ga0070679_100000067 3300005530 Bacteria 78214
18 Ga0070665_100000411 3300005548 Bacteria 62752
19 Ga0070664_100055486 3300005564 Bacteria 3364
20 Ga0068854_100000114 3300005578 Bacteria 55089
21 Ga0068864_100000043 3300005618 Bacteria 162928
22 Ga0068866_10000002 3300005718 Bacteria 394090
23 Ga0081455_10004800 3300005937 Bacteria 15021
24 Ga0081455_10027311 3300005937 Bacteria 5232
25 Ga0081455_10028382 3300005937 Bacteria 5112
26 Ga0081538_10000009 3300005981 Bacteria 172017
27 Ga0081538_10000068 3300005981 Bacteria 97659
28 Ga0081538_10000443 3300005981 Bacteria 46582
29 Ga0081538_10000660 3300005981 Bacteria 38084
30 Ga0081538_10000887 3300005981 Bacteria 32365
31 Ga0081538_10004661 3300005981 Bacteria 12571
32 Ga0081538_10004845 3300005981 Bacteria 12261
33 Ga0081538_10014472 3300005981 Bacteria 6176
34 Ga0081540_1000079 3300005983 Bacteria 103786
35 Ga0070715_10000012 3300006163 Bacteria 173731
36 Ga0075431_100151153 3300006847 Bacteria 2391
37 Ga0075433_10000032 3300006852 Bacteria 55399
38 Ga0068865_100000160 3300006881 Bacteria 36781
39 Ga0111539_10003156 3300009094 Bacteria 21810
40 Ga0111539_10026295 3300009094 Bacteria 7118
41 Ga0105245_10005125 3300009098 Bacteria 11514
42 Ga0105245_10022161 3300009098 Bacteria 5578
43 Ga0105247_10000275 3300009101 Bacteria 47915
44 Ga0114129_10014555 3300009147 Bacteria 11209
45 Ga0105243_10026751 3300009148 Bacteria 4417
46 Ga0105249_10001633 3300009553 Bacteria 19629
47 Ga0157371_10011147 3300013102 Bacteria 6956
48 Ga0157372_10000129 3300013307 Bacteria 82491
49 Ga0157379_10007223 3300014968 Bacteria 9609
50 Ga0207642_10000001 3300025899 Bacteria 714030
51 Ga0207642_10000003 3300025899 Bacteria 650651
52 Ga0207642_10000004 3300025899 Bacteria 407822
53 Ga0207710_10000512 3300025900 Bacteria 24131
54 Ga0207680_10015553 3300025903 Bacteria 3973
55 Ga0207685_10000001 3300025905 Bacteria 604473
56 Ga0207652_10000080 3300025921 Bacteria 104739
57 Ga0207659_10000018 3300025926 Bacteria 156920
58 Ga0207700_10000081 3300025928 Bacteria 59083
59 Ga0207690_10006892 3300025932 Bacteria 6740
60 Ga0207669_10000036 3300025937 Bacteria 78568
61 Ga0207661_10000239 3300025944 Bacteria 36056
62 Ga0207651_10001447 3300025960 Bacteria 10810
63 Ga0207712_10002799 3300025961 Bacteria 11160
64 Ga0207668_10003558 3300025972 Bacteria 9154
65 Ga0207640_10000015 3300025981 Bacteria 215411
66 Ga0207708_10008250 3300026075 Bacteria 7713
67 Ga0207676_10000042 3300026095 Bacteria 163475
68 Ga0207683_10001643 3300026121 Bacteria 20022
69 Ga0268266_10000564 3300028379 Bacteria 51534
70 Ga0268266_10014540 3300028379 Bacteria 6765
71 Ga0307405_10015867 3300031731 Bacteria 4092
72 Ga0307410_10001923 3300031852 Bacteria 9736
73 Ga0307407_10029772 3300031903 Bacteria 2938
74 Ga0307409_100001368 3300031995 Bacteria 11893
75 Ga0307409_100010808 3300031995 Bacteria 5707
76 Ga0307409_100040106 3300031995 Bacteria 3482
77 Ga0307416_100001194 3300032002 Bacteria 13967
78 Ga0307416_100065387 3300032002 Bacteria 2988
79 Ga0307414_10042696 3300032004 Bacteria 3083
80 Ga0307415_100000800 3300032126 Bacteria 14302
81 Ga0307415_100010775 3300032126 Bacteria 5193
82 Ga0307415_100032828 3300032126 Bacteria 3362
83 Ga0373937_0034081 3300036401 Bacteria 4629
84 Ga0395898_0014814 3300037466 Bacteria 8003
85 Ga0395905_0006044 3300037471 Bacteria 12258
86 Ga0395901_0003642 3300038443 Bacteria 15539
87 Ga0439464_0006295 3300042439 Bacteria 3088
88 Ga0466963_0000011 3300044694 Bacteria 65918
89 Ga0466967_0000002 3300045976 Bacteria 219994
90 Ga0495592_0000024 3300046454 Bacteria 136661
91 Ga0495603_0000057 3300046455 Bacteria 48728
92 Ga0495629_0000025 3300046459 Bacteria 135624
93 Ga0495662_0002121 3300046476 Bacteria 9950
94 Ga0495594_0000009 3300046499 Bacteria 122139
95 Ga0495606_0000017 3300046507 Bacteria 284549
96 Ga0495608_0000056 3300046511 Bacteria 91026
97 Ga0495630_0000099 3300046517 Bacteria 67611
98 Ga0495667_0000015 3300046559 Bacteria 200377
99 Ga0495657_0000023 3300046675 Bacteria 145522
100 Ga0495669_0022026 3300046684 Bacteria 2768
101 Ga0495613_0000113 3300046689 Bacteria 79559
102 Ga0495624_0000127 3300046690 Bacteria 53463
103 Ga0495600_0020396 3300046809 Bacteria 4240
104 Ga0495604_0002470 3300047317 Bacteria 14758
105 Ga0495604_0056903 3300047317 Bacteria 3008
106 Ga0495680_0001079 3300047322 Bacteria 30239
107 Ga0495675_0000039 3300047444 Bacteria 91025
108 Ga0495684_0040112 3300047471 Bacteria 3590
109 Ga0496106_0015486 3300048909 Bacteria 5645
110 Ga0496108_0000039 3300048911 Bacteria 149440
111 Ga0496108_0000062 3300048911 Bacteria 122391
112 Ga0496109_0000007 3300048912 Bacteria 247554
113 Ga0496109_0000038 3300048912 Bacteria 150745
114 Ga0496109_0000066 3300048912 Bacteria 112004
115 Ga0496110_0000062 3300048913 Bacteria 53333
116 Ga0496111_0000010 3300048914 Bacteria 92600
117 Ga0496112_0000003 3300048915 Bacteria 660147
118 Ga0496112_0001122 3300048915 Bacteria 19906
119 Ga0496113_0000014 3300048916 Bacteria 79850
120 Ga0496113_0000946 3300048916 Bacteria 15442
121 Ga0496113_0010578 3300048916 Bacteria 6106
122 Ga0501081_0017172 3300049743 Bacteria 4787
123 nmdc:mga06r32_132231_c1 3300050510 Bacteria 2468
124 nmdc:mga0a205_1_c2 3300050515 Bacteria 266330
125 Ga0495601_0000013 3300053077 Bacteria 226476
126 Ga0495601_0000794 3300053077 Bacteria 17026
127 Ga0495612_0000115 3300053078 Bacteria 33767
128 Ga0495595_0000029 3300053084 Bacteria 91026
129 Ga0495619_0000029 3300053085 Bacteria 158166
130 Ga0495619_0000031 3300053085 Bacteria 145508
131 Ga0495619_0000236 3300053085 Bacteria 40183
132 Ga0495619_0020207 3300053085 Bacteria 4239
133 Ga0495619_0022459 3300053085 Bacteria 4038
134 Ga0530510_0040829 3300061734 Bacteria 3349

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005337 Ga0070682_100000045 Ga0070682_100000045104 583
2 3300037466 Ga0395898_0014814 Ga0395898_0014814_2357_4450 593
3 3300037471 Ga0395905_0006044 Ga0395905_0006044_7764_9857 593
4 3300038443 Ga0395901_0003642 Ga0395901_0003642_9197_11290 593
5 3300031995 Ga0307409_100010808 Ga0307409_1000108083 605
6 3300003373 JGI25407J50210_10007144 JGI25407J50210_100071442 612
7 3300005937 Ga0081455_10027311 Ga0081455_100273115 624
8 3300048912 Ga0496109_0000066 Ga0496109_0000066_64360_66513 626
9 3300005439 Ga0070711_100022004 Ga0070711_1000220041 627
10 3300046511 Ga0495608_0000056 Ga0495608_0000056_70670_72823 627
11 3300046675 Ga0495657_0000023 Ga0495657_0000023_18204_20357 627
12 3300047444 Ga0495675_0000039 Ga0495675_0000039_70669_72822 627
13 3300053084 Ga0495595_0000029 Ga0495595_0000029_70670_72823 627
14 3300053085 Ga0495619_0000029 Ga0495619_0000029_30856_33009 627
15 3300046476 Ga0495662_0002121 Ga0495662_0002121_1134_3281 628
16 3300049743 Ga0501081_0017172 Ga0501081_0017172_1327_3477 631
17 3300006163 Ga0070715_10000012 Ga0070715_1000001272 633
18 3300025905 Ga0207685_10000001 Ga0207685_10000001492 633
19 3300003373 JGI25407J50210_10000215 JGI25407J50210_100002151 634
20 3300046559 Ga0495667_0000015 Ga0495667_0000015_6013_8160 635
21 3300047322 Ga0495680_0001079 Ga0495680_0001079_1791_3938 635
22 3300005365 Ga0070688_100000004 Ga0070688_10000000481 636
23 3300005466 Ga0070685_10000060 Ga0070685_1000006038 636
24 3300006881 Ga0068865_100000160 Ga0068865_10000016034 639
25 3300006852 Ga0075433_10000032 Ga0075433_1000003221 641
26 3300050515 nmdc:mga0a205_1_c2 nmdc:mga0a205_1_c2_70928_73078 641
27 3300061734 Ga0530510_0040829 Ga0530510_0040829_273_2612 641
28 3300005356 Ga0070674_100000003 Ga0070674_100000003174 643
29 3300005718 Ga0068866_10000002 Ga0068866_10000002236 643
30 3300009094 Ga0111539_10026295 Ga0111539_100262953 643
31 3300025899 Ga0207642_10000001 Ga0207642_10000001379 643
32 3300025899 Ga0207642_10000003 Ga0207642_10000003379 643
33 3300025899 Ga0207642_10000004 Ga0207642_10000004379 643
34 3300025937 Ga0207669_10000036 Ga0207669_1000003645 643
35 3300025960 Ga0207651_10001447 Ga0207651_100014472 643
36 3300005337 Ga0070682_100041709 Ga0070682_1000417092 645
37 3300009098 Ga0105245_10022161 Ga0105245_100221613 645
38 3300009148 Ga0105243_10026751 Ga0105243_100267512 645
39 3300026075 Ga0207708_10008250 Ga0207708_100082502 645
40 3300048909 Ga0496106_0015486 Ga0496106_0015486_2988_5135 645
41 3300005981 Ga0081538_10000443 Ga0081538_1000044313 647
42 3300005981 Ga0081538_10000887 Ga0081538_1000088722 647
43 3300048915 Ga0496112_0000003 Ga0496112_0000003_107940_110087 650
44 3300053078 Ga0495612_0000115 Ga0495612_0000115_18397_20541 650
45 3300005981 Ga0081538_10004845 Ga0081538_100048454 651
46 3300032004 Ga0307414_10042696 Ga0307414_100426961 651
47 3300031731 Ga0307405_10015867 Ga0307405_100158674 654
48 3300031852 Ga0307410_10001923 Ga0307410_1000192311 654
49 3300031995 Ga0307409_100001368 Ga0307409_10000136810 654
50 3300032002 Ga0307416_100001194 Ga0307416_1000011949 654
51 3300032126 Ga0307415_100000800 Ga0307415_10000080010 654
52 3300025903 Ga0207680_10015553 Ga0207680_100155533 657
53 3300009094 Ga0111539_10003156 Ga0111539_1000315622 658
54 3300009147 Ga0114129_10014555 Ga0114129_100145557 658
55 3300005981 Ga0081538_10004661 Ga0081538_100046616 660
56 3300005347 Ga0070668_100005273 Ga0070668_1000052737 666
57 3300005367 Ga0070667_100002983 Ga0070667_1000029831 666
58 3300009553 Ga0105249_10001633 Ga0105249_100016339 666
59 3300014968 Ga0157379_10007223 Ga0157379_100072232 666
60 3300025961 Ga0207712_10002799 Ga0207712_100027992 666
61 3300025972 Ga0207668_10003558 Ga0207668_100035582 666
62 3300028379 Ga0268266_10014540 Ga0268266_100145405 666
63 3300032126 Ga0307415_100010775 Ga0307415_1000107752 666
64 3300046455 Ga0495603_0000057 Ga0495603_0000057_5700_7850 666
65 3300046689 Ga0495613_0000113 Ga0495613_0000113_7834_9981 666
66 3300048915 Ga0496112_0001122 Ga0496112_0001122_8991_11138 667
67 3300048916 Ga0496113_0000014 Ga0496113_0000014_51691_53838 667
68 3300053077 Ga0495601_0000013 Ga0495601_0000013_142737_144884 669
69 3300005436 Ga0070713_100000009 Ga0070713_100000009163 672
70 3300005564 Ga0070664_100055486 Ga0070664_1000554862 672
71 3300025928 Ga0207700_10000081 Ga0207700_1000008160 672
72 3300025944 Ga0207661_10000239 Ga0207661_1000023927 672
73 3300005578 Ga0068854_100000114 Ga0068854_1000001144 674
74 3300025981 Ga0207640_10000015 Ga0207640_1000001544 674
75 3300046690 Ga0495624_0000127 Ga0495624_0000127_4964_7117 674
76 3300005981 Ga0081538_10000660 Ga0081538_100006607 675
77 3300042439 Ga0439464_0006295 Ga0439464_0006295_165_2396 675
78 3300047317 Ga0495604_0002470 Ga0495604_0002470_12574_14721 675
79 3300005983 Ga0081540_1000079 Ga0081540_100007949 676
80 3300013102 Ga0157371_10011147 Ga0157371_100111474 676
81 3300053085 Ga0495619_0000236 Ga0495619_0000236_14525_16675 676
82 3300046809 Ga0495600_0020396 Ga0495600_0020396_1389_3536 678
83 3300005530 Ga0070679_100000067 Ga0070679_10000006768 679
84 3300009101 Ga0105247_10000275 Ga0105247_1000027524 679
85 3300025900 Ga0207710_10000512 Ga0207710_1000051213 679
86 3300025921 Ga0207652_10000080 Ga0207652_1000008083 679
87 3300005981 Ga0081538_10014472 Ga0081538_100144723 680
88 3300046684 Ga0495669_0022026 Ga0495669_0022026_213_2360 680
89 3300048916 Ga0496113_0010578 Ga0496113_0010578_387_2537 680
90 3300053085 Ga0495619_0022459 Ga0495619_0022459_982_3132 680
91 3300009098 Ga0105245_10005125 Ga0105245_1000512511 681
92 3300046507 Ga0495606_0000017 Ga0495606_0000017_137614_139767 681
93 3300048913 Ga0496110_0000062 Ga0496110_0000062_38616_40769 681
94 3300048914 Ga0496111_0000010 Ga0496111_0000010_61614_63767 681
95 3300048916 Ga0496113_0000946 Ga0496113_0000946_12280_14427 681
96 3300005366 Ga0070659_100004757 Ga0070659_1000047577 683
97 3300025932 Ga0207690_10006892 Ga0207690_100068924 683
98 3300032126 Ga0307415_100032828 Ga0307415_1000328282 684
99 3300046499 Ga0495594_0000009 Ga0495594_0000009_111930_114074 684
100 3300005981 Ga0081538_10000068 Ga0081538_1000006818 685
101 3300046459 Ga0495629_0000025 Ga0495629_0000025_102946_105099 685
102 3300005937 Ga0081455_10004800 Ga0081455_1000480013 686
103 3300005937 Ga0081455_10028382 Ga0081455_100283822 686
104 3300005981 Ga0081538_10000009 Ga0081538_1000000912 686
105 3300005456 Ga0070678_100005338 Ga0070678_1000053384 687
106 3300005548 Ga0070665_100000411 Ga0070665_10000041139 687
107 3300006847 Ga0075431_100151153 Ga0075431_1001511531 687
108 3300026121 Ga0207683_10001643 Ga0207683_1000164313 687
109 3300028379 Ga0268266_10000564 Ga0268266_100005644 687
110 3300050510 nmdc:mga06r32_132231_c1 nmdc:mga06r32_132231_c1_97_2259 687
111 3300053085 Ga0495619_0000031 Ga0495619_0000031_28940_31093 687
112 3300005618 Ga0068864_100000043 Ga0068864_10000004381 688
113 3300026095 Ga0207676_10000042 Ga0207676_1000004286 688
114 3300031995 Ga0307409_100040106 Ga0307409_1000401061 690
115 3300032002 Ga0307416_100065387 Ga0307416_1000653872 690
116 iso_pu_bacteria 8054609563 8054611354 690
117 3300046454 Ga0495592_0000024 Ga0495592_0000024_85494_87647 691
118 3300048911 Ga0496108_0000039 Ga0496108_0000039_69500_71647 691
119 3300048912 Ga0496109_0000038 Ga0496109_0000038_78023_80170 691
120 3300036401 Ga0373937_0034081 Ga0373937_0034081_1937_4081 693
121 3300047317 Ga0495604_0056903 Ga0495604_0056903_67_2211 693
122 3300053085 Ga0495619_0020207 Ga0495619_0020207_1603_3747 693
123 3300013307 Ga0157372_10000129 Ga0157372_1000012950 694
124 3300044694 Ga0466963_0000011 Ga0466963_0000011_41910_44060 694
125 3300031903 Ga0307407_10029772 Ga0307407_100297722 700
126 3300005354 Ga0070675_100000070 Ga0070675_10000007022 701
127 3300025926 Ga0207659_10000018 Ga0207659_1000001842 701
128 3300045976 Ga0466967_0000002 Ga0466967_0000002_176782_178932 701
129 3300002074 JGI24748J21848_1000391 JGI24748J21848_10003914 702
130 3300002239 JGI24034J26672_10000379 JGI24034J26672_100003791 702
131 3300046517 Ga0495630_0000099 Ga0495630_0000099_56208_58358 702
132 3300047471 Ga0495684_0040112 Ga0495684_0040112_1413_3563 702
133 3300048911 Ga0496108_0000062 Ga0496108_0000062_50754_52910 702
134 3300048912 Ga0496109_0000007 Ga0496109_0000007_53928_56084 702
135 3300053077 Ga0495601_0000794 Ga0495601_0000794_13001_15151 702

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03176

MMPL

MMPL family

37

360

0.87

PF03176

MMPL

MMPL family

407

698

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
6n40-assembly1.cif.gz_A crystal structure of mmpl3 from mycobacterium smegmatis 0.817 5 687
7nvh-assembly1.cif.gz_A cryo-em structure of the mycolic acid transporter mmpl3 from m. tuberculosis 0.8075 5 687
7k7m-assembly2.cif.gz_B crystal structure of a membrane protein 0.8054 5 687
6ajj-assembly1.cif.gz_A crystal structure of mycolic acid transporter mmpl3 from mycobacterium smegmatis complexed with ica38 0.8043 4 682
7wnx-assembly1.cif.gz_A cryo-em structure of mycobacterium smegmatis mmpl3 complexed with st004 in lipid nanodiscs 0.7991 2 697
ID Description Score Start End Superfamily
af_P9WJV5_157_342_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9648 177 327 1.20.1640.10
af_P9WJT9_146_343_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9598 179 327 1.20.1640.10
af_P9WJT9_505_699_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9553 487 672 1.20.1640.10
af_P9WJV5_535_729_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9463 485 674 1.20.1640.10
af_Q4DFK7_607_812_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9462 488 671 1.20.1640.10
ID Description Score Start End GO Terms
AF-A0A6B3CV21-F1-model_v4 MMPL family transporter 0.9531 401 507
AF-A0A432I0A7-F1-model_v4 Membrane transport protein MMPL domain-containing protein 0.9478 506 690 GO:0005886
AF-A0A413RNW5-F1-model_v4 Membrane transport protein MMPL domain-containing protein 0.9394 539 691 GO:0005886
AF-A0A6B3CV21-F1-model_v4 MMPL family transporter 0.9362 401 507
AF-A0A7K3ZLN2-F1-model_v4 MMPL family transporter 0.9305 492 690 GO:0005886

Feature Viewer

pLDDT pTM Quality
77.07 0.75 High
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Predicted Structure (AlphaFold2)

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