F167079

General Info

Members Datasets Scaffolds Average Seq Length
136 111 272 664

Family's Representative Sequence

Representative Sequence 3300031239|Ga0265328_10017527|Ga0265328_100175271
Length 735
Sequence MTHRFMRTSIRTMAILGWLGGTLAAQAMAATVQNGQVQVQLVASVNQVRPGEQITVGLQQHIQPGWHTYWLNPGDSGLATTIEWTLPTGASAGDIQWPLPHRFVQGSVGNFGYDTDVTLLSRISVPAKLRSGASFPIGAKVRWLACRDVCVPQEATVQLVLPVTHADAVRMPTNPSIDASLAQLPVPAPWPVLAQQRGKGMALRVPQAALGPTPVKAIWFYPSEAGPIDHMAAQYRVRQGKDVSLLLTSGSAPLVPGQTLKGLLVITHEVAGTDRAEGYWIDTPLRPFGGLPSPHAETMTTDRQGAVYQTAEMGARPSPASSLSLGVALLLALMGGMVLNLMPCVFPVLSIKTLALIGHREHTARHGLAYTAGVLASFALLGGVMIAIKAGGAQAGWGFQFQSPVFVLLMAYLMFVVGLSLSGVFTIGQSVTGLGSSLAAREGYTGSFFTGVLATIVATPCTAPFMGGAIGFALTQPPAALMAVFLSLGLGLALPYLLLSVWPALQRRLPRPGVWMERVKQVLAFPMYGAAVWLVWVLAQQAGVDAATVALSGMVLLAFGAWSYDSSRMGSAAAQLGGAALAVLAVAGALTGGCMGVQAGEMVSPHMASAPIGNGNLHAWEPYSPERLETLREQGQPVFVNLTAAWCITCLVNERVALGQPAVLDAIKTEGIHYLKGDWTNQNADVGQLLKQFGRGGVPLYVFFPNGRASKPVVLPQVLTPDIVLATLKEPISWP

Samples

Sample ID Description Type Environment
1 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
2 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
5 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
6 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
7 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
8 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
9 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
10 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
11 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
12 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
13 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
14 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
15 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
16 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
17 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
18 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
19 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
20 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
21 3300006944 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW Metagenome Nodule
22 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
23 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
24 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
25 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
26 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
27 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
28 3300012497 Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.240510 Metagenome Rhizosphere
29 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
30 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
31 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
32 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
33 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
34 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
35 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
36 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
37 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
38 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
39 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
40 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300027296 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes) (version 2) Metagenome Nodule
48 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
49 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
50 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
51 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
52 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
53 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
54 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
55 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
56 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
57 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
58 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
59 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
60 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
61 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
62 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
63 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
64 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
65 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
66 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
67 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
68 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
69 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
70 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
71 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
72 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
73 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
74 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
75 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
76 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
77 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
78 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
79 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
80 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
81 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
82 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
83 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
84 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
85 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
86 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
87 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
88 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
89 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
90 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
91 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
92 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
93 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
94 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
95 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
96 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
97 3300053145 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 endosphere Metagenome Endosphere
98 3300053154 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 endosphere Metagenome Endosphere
99 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
100 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
101 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
102 2595698237 Methylobacterium sp. UNCCL125 Isolate Unclassified
103 2738541281 Methylobacterium sp. GV094 Isolate Unclassified
104 2738543032 Methylobacterium sp. GV104 Isolate Unclassified
105 2831864461 Roseateles noduli HZ7 Isolate Nodule
106 2857558681 Duganella sp. R-74565 Isolate Unclassified
107 2861691609 Methylorubrum thiocyanatum DSM 11490 Isolate Rhizosphere
108 2889306138 Methylobacterium sp. PvR107 Isolate Rhizosphere
109 2902330777 Methylobacterium sp. 2A Isolate Unclassified
110 2902405164 Methylobacterium sp. P1-11 Isolate Unclassified
111 2928125067 Methylobacterium sp. 1973 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 92.65
Metatranscriptomes 0
Isolates 7.35

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 19.85
Nodule 2.21
Rhizoplane 0.74
Rhizosphere 62.5
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0265328_10017527 3300031239 Bacteria 2773
2 JGI25153J46596_10007363 3300003215 Bacteria 5427
3 rootL2_10002373 3300003322 Bacteria 27509
4 rootH1_10012743 3300003323 Bacteria 17143
5 rootH1_10020813 3300003323 Bacteria 21728
6 Ga0055526_1002236 3300003771 Bacteria 13252
7 Ga0055537_1002895 3300003773 Bacteria 5488
8 Ga0055524_1000320 3300003775 Bacteria 45185
9 Ga0055524_1000341 3300003775 Bacteria 42723
10 Ga0055524_1000441 3300003775 Bacteria 34575
11 Ga0055531_10008180 3300003794 Bacteria 5570
12 Ga0065165_1000409 3300005262 Bacteria 68773
13 Ga0070658_10039662 3300005327 Bacteria 3799
14 Ga0070680_100001596 3300005336 Bacteria 16557
15 Ga0070680_100018915 3300005336 Bacteria 5450
16 Ga0070689_100088490 3300005340 Bacteria 2438
17 Ga0070714_100015938 3300005435 Bacteria 6060
18 Ga0070705_100024821 3300005440 Bacteria 3241
19 Ga0070681_10000010 3300005458 Bacteria 140126
20 Ga0070679_100000194 3300005530 Bacteria 49506
21 Ga0070679_100100149 3300005530 Bacteria 2885
22 Ga0070695_100010703 3300005545 Bacteria 5481
23 Ga0070664_100053646 3300005564 Bacteria 3418
24 Ga0068852_100000233 3300005616 Bacteria 37658
25 Ga0068852_100033610 3300005616 Bacteria 4260
26 Ga0075370_10004181 3300006353 Bacteria 6965
27 Ga0099823_1000014 3300006944 Bacteria 89398
28 Ga0105250_10000144 3300009092 Bacteria 62436
29 Ga0105240_10033899 3300009093 Bacteria 6593
30 Ga0105240_10066422 3300009093 Bacteria 4474
31 Ga0105240_10073156 3300009093 Bacteria 4233
32 Ga0105243_10017387 3300009148 Bacteria 5436
33 Ga0105242_10014704 3300009176 Bacteria 6060
34 Ga0105248_10000001 3300009177 Bacteria 1881304
35 Ga0105238_10025014 3300009551 Bacteria 6086
36 Ga0157319_1000002 3300012497 Bacteria 410803
37 Ga0213874_10012285 3300021377 Bacteria 2192
38 Ga0213876_10002212 3300021384 Bacteria 11480
39 Ga0213875_10000383 3300021388 Bacteria 39968
40 Ga0213875_10000859 3300021388 Bacteria 22445
41 Ga0209565_1000007 3300025263 Bacteria 784361
42 Ga0209673_1007385 3300025273 Bacteria 5082
43 Ga0209673_1009777 3300025273 Bacteria 4111
44 Ga0209564_1000030 3300025295 Bacteria 503296
45 Ga0209758_1016056 3300025297 Bacteria 3827
46 Ga0209050_1011968 3300025298 Bacteria 4041
47 Ga0209256_1000009 3300025299 Bacteria 922071
48 Ga0209256_1000010 3300025299 Bacteria 912110
49 Ga0209256_1000236 3300025299 Bacteria 98648
50 Ga0209256_1001895 3300025299 Bacteria 19134
51 Ga0209051_1000543 3300025303 Bacteria 46480
52 Ga0209257_1000393 3300025304 Bacteria 86777
53 Ga0209257_1000465 3300025304 Bacteria 73893
54 Ga0209257_1010216 3300025304 Bacteria 4811
55 Ga0207696_1000451 3300025711 Bacteria 35971
56 Ga0207707_10000005 3300025912 Bacteria 382024
57 Ga0207707_10070465 3300025912 Bacteria 3046
58 Ga0207695_10053510 3300025913 Bacteria 4222
59 Ga0207652_10000068 3300025921 Bacteria 110287
60 Ga0207711_10000002 3300025941 Bacteria 1228676
61 Ga0207667_10052211 3300025949 Bacteria 4307
62 Ga0207698_10001085 3300026142 Bacteria 15822
63 Ga0209389_1000720 3300027296 Bacteria 20684
64 Ga0265338_10003800 3300028800 Bacteria 20993
65 Ga0265338_10067309 3300028800 Bacteria 3094
66 Ga0316177_1084371 3300030731 Bacteria 5223
67 Ga0265340_10005748 3300031247 Bacteria 6853
68 Ga0265339_10020689 3300031249 Bacteria 3840
69 Ga0316579_10012881 3300031691 Bacteria 3589
70 Ga0265314_10001135 3300031711 Bacteria 30843
71 Ga0265314_10001474 3300031711 Bacteria 26171
72 Ga0265342_10005132 3300031712 Bacteria 10080
73 Ga0316576_10001722 3300031727 Bacteria 12037
74 Ga0316578_10004700 3300031728 Bacteria 6494
75 Ga0316578_10007655 3300031728 Bacteria 5438
76 Ga0307406_10001948 3300031901 Bacteria 11277
77 Ga0316585_10009797 3300032137 Bacteria 2804
78 Ga0316574_0019315 3300035398 Bacteria 4018
79 Ga0373937_0076762 3300036401 Bacteria 3086
80 Ga0316582_0015622 3300036647 Bacteria 4348
81 Ga0316584_0005310 3300036712 Bacteria 8629
82 Ga0395900_0014045 3300037418 Bacteria 8178
83 Ga0395900_0036763 3300037418 Bacteria 5047
84 Ga0395898_0035329 3300037466 Bacteria 4971
85 Ga0395905_0004164 3300037471 Bacteria 15125
86 Ga0436364_0328145 3300037853 Bacteria 88179
87 Ga0436364_0593069 3300037853 Bacteria 62407
88 Ga0395901_0003059 3300038443 Bacteria 16850
89 Ga0395901_0020164 3300038443 Bacteria 6823
90 Ga0436365_0482157 3300039437 Bacteria 3745
91 Ga0436365_1338454 3300039437 Bacteria 115168
92 Ga0436360_0919073 3300039438 Bacteria 3107
93 Ga0436363_0305746 3300039450 Bacteria 2931
94 Ga0466969_0002940 3300044656 Bacteria 9093
95 Ga0466966_0027065 3300044684 Bacteria 3740
96 Ga0466961_0002740 3300044693 Bacteria 10958
97 Ga0466971_0001487 3300044719 Bacteria 9889
98 Ga0466957_0004184 3300044842 Bacteria 7996
99 Ga0466957_0020560 3300044842 Bacteria 3885
100 Ga0466959_0000187 3300045049 Bacteria 40519
101 Ga0451576_0078475 3300045051 Bacteria 3436
102 Ga0466958_0001435 3300045836 Bacteria 11294
103 Ga0466967_0020840 3300045976 Bacteria 5309
104 Ga0495584_0000050 3300046491 Bacteria 87308
105 Ga0495594_0033191 3300046499 Bacteria 2805
106 Ga0495606_0001743 3300046507 Bacteria 27920
107 Ga0495606_0004053 3300046507 Bacteria 14934
108 Ga0495610_0004507 3300046512 Bacteria 10263
109 Ga0495633_0029648 3300046558 Bacteria 2661
110 Ga0495634_0035440 3300046642 Bacteria 3418
111 Ga0495611_0008155 3300046648 Bacteria 4444
112 Ga0495658_0031291 3300046683 Bacteria 2897
113 Ga0495687_000266 3300047443 Bacteria 70002
114 Ga0495673_0000014 3300047469 Bacteria 599202
115 Ga0496102_0003659 3300048905 Bacteria 12991
116 Ga0496126_0014088 3300048929 Bacteria 8100
117 Ga0501034_0014173 3300049571 Bacteria 8217
118 Ga0501037_0022184 3300049573 Bacteria 4698
119 Ga0501080_0016904 3300049742 Bacteria 6738
120 Ga0501083_0008668 3300049744 Bacteria 7174
121 Ga0501035_0003937 3300049822 Bacteria 14159
122 Ga0500586_000025 3300053145 Bacteria 27898
123 Ga0500619_009817 3300053154 Bacteria 2393
124 Ga0500622_0000419 3300053156 Bacteria 40186
125 Ga0500645_004620 3300053730 Bacteria 5243
126 Ga0466962_0000700 3300061719 Bacteria 14922
127 2596374174 2595698237 Bacteria 6712432
128 2738744597 2738541281 Bacteria 5112672
129 2739353827 2738543032 Bacteria 5115625
130 2831864804 2831864461 Bacteria 6502356
131 2857563668 2857558681 Bacteria 6617694
132 2861693993 2861691609 Bacteria 5628931
133 2889307130 2889306138 Bacteria 6358934
134 2902333036 2902330777 Bacteria 6395352
135 2902411923 2902405164 Bacteria 6784948
136 2928129760 2928125067 Bacteria 5937560
137 Ga0265328_10017527
138 JGI25153J46596_10007363
139 rootL2_10002373
140 rootH1_10012743
141 rootH1_10020813
142 Ga0055526_1002236
143 Ga0055537_1002895
144 Ga0055524_1000320
145 Ga0055524_1000341
146 Ga0055524_1000441
147 Ga0055531_10008180
148 Ga0065165_1000409
149 Ga0070658_10039662
150 Ga0070680_100001596
151 Ga0070680_100018915
152 Ga0070689_100088490
153 Ga0070714_100015938
154 Ga0070705_100024821
155 Ga0070681_10000010
156 Ga0070679_100000194
157 Ga0070679_100100149
158 Ga0070695_100010703
159 Ga0070664_100053646
160 Ga0068852_100000233
161 Ga0068852_100033610
162 Ga0075370_10004181
163 Ga0099823_1000014
164 Ga0105250_10000144
165 Ga0105240_10033899
166 Ga0105240_10066422
167 Ga0105240_10073156
168 Ga0105243_10017387
169 Ga0105242_10014704
170 Ga0105248_10000001
171 Ga0105238_10025014
172 Ga0157319_1000002
173 Ga0213874_10012285
174 Ga0213876_10002212
175 Ga0213875_10000383
176 Ga0213875_10000859
177 Ga0209565_1000007
178 Ga0209673_1007385
179 Ga0209673_1009777
180 Ga0209564_1000030
181 Ga0209758_1016056
182 Ga0209050_1011968
183 Ga0209256_1000009
184 Ga0209256_1000010
185 Ga0209256_1000236
186 Ga0209256_1001895
187 Ga0209051_1000543
188 Ga0209257_1000393
189 Ga0209257_1000465
190 Ga0209257_1010216
191 Ga0207696_1000451
192 Ga0207707_10000005
193 Ga0207707_10070465
194 Ga0207695_10053510
195 Ga0207652_10000068
196 Ga0207711_10000002
197 Ga0207667_10052211
198 Ga0207698_10001085
199 Ga0209389_1000720
200 Ga0265338_10003800
201 Ga0265338_10067309
202 Ga0316177_1084371
203 Ga0265340_10005748
204 Ga0265339_10020689
205 Ga0316579_10012881
206 Ga0265314_10001135
207 Ga0265314_10001474
208 Ga0265342_10005132
209 Ga0316576_10001722
210 Ga0316578_10004700
211 Ga0316578_10007655
212 Ga0307406_10001948
213 Ga0316585_10009797
214 Ga0316574_0019315
215 Ga0373937_0076762
216 Ga0316582_0015622
217 Ga0316584_0005310
218 Ga0395900_0014045
219 Ga0395900_0036763
220 Ga0395898_0035329
221 Ga0395905_0004164
222 Ga0436364_0328145
223 Ga0436364_0593069
224 Ga0395901_0003059
225 Ga0395901_0020164
226 Ga0436365_0482157
227 Ga0436365_1338454
228 Ga0436360_0919073
229 Ga0436363_0305746
230 Ga0466969_0002940
231 Ga0466966_0027065
232 Ga0466961_0002740
233 Ga0466971_0001487
234 Ga0466957_0004184
235 Ga0466957_0020560
236 Ga0466959_0000187
237 Ga0451576_0078475
238 Ga0466958_0001435
239 Ga0466967_0020840
240 Ga0495584_0000050
241 Ga0495594_0033191
242 Ga0495606_0001743
243 Ga0495606_0004053
244 Ga0495610_0004507
245 Ga0495633_0029648
246 Ga0495634_0035440
247 Ga0495611_0008155
248 Ga0495658_0031291
249 Ga0495687_000266
250 Ga0495673_0000014
251 Ga0496102_0003659
252 Ga0496126_0014088
253 Ga0501034_0014173
254 Ga0501037_0022184
255 Ga0501080_0016904
256 Ga0501083_0008668
257 Ga0501035_0003937
258 Ga0500586_000025
259 Ga0500619_009817
260 Ga0500622_0000419
261 Ga0500645_004620
262 Ga0466962_0000700
263 2596374174
264 2738744597
265 2739353827
266 2831864804
267 2857563668
268 2861693993
269 2889307130
270 2902333036
271 2902411923
272 2928129760

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13899

Thioredoxin_7

Thioredoxin-like

619

706

0.94

PF11412

DsbD_N

Thiol:disulfide interchange protein DsbD, N-terminal

35

162

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
1vrs-assembly3.cif.gz_F crystal structure of the disulfide-linked complex between the n-terminal and c-terminal domain of the electron transfer catalyst dsbd 0.8123 564 668
2fwg-assembly1.cif.gz_A high resolution crystal structure of the c-terminal domain of the electron transfer catalyst dsbd (photoreduced form) 0.7945 565 668
4ip6-assembly1.cif.gz_A c-terminal domain of the thiol:disulfide interchange protein dsbd, q488a mutant 0.7917 564 670
7aye-assembly1.cif.gz_B crystal structure of the computationally designed chemically disruptable heterodimer ld6-mdm2 0.7917 567 668
2fwe-assembly1.cif.gz_A crystal structure of the c-terminal domain of the electron transfer catalyst dsbd (oxidized form) 0.7914 565 670
ID Description Score Start End Superfamily
af_Q53MH7_11_119_3.40.30.10 Alpha Beta;3-Layer(aba) Sandwich;Glutaredoxin;Glutaredoxin 0.7881 563 668 3.40.30.10
1uc7A00 Alpha Beta;3-Layer(aba) Sandwich;Glutaredoxin;Glutaredoxin 0.7833 567 670 3.40.30.10
af_Q8VCH8_3_123_3.40.30.10 Alpha Beta;3-Layer(aba) Sandwich;Glutaredoxin;Glutaredoxin 0.767 559 668 3.40.30.10
af_E1JGY6_43_148_3.40.30.10 Alpha Beta;3-Layer(aba) Sandwich;Glutaredoxin;Glutaredoxin 0.7603 562 670 3.40.30.10
af_Q869Q9_164_269_3.40.30.10 Alpha Beta;3-Layer(aba) Sandwich;Glutaredoxin;Glutaredoxin 0.7581 563 667 3.40.30.10
ID Description Score Start End GO Terms
AF-A0A838VA38-F1-model_v4 Thioredoxin family protein 0.9566 560 669 GO:0015035
GO:0045454
AF-A0A7X6AN14-F1-model_v4 deleted 0.9518 563 666
AF-A0A6L7V2A2-F1-model_v4 deleted 0.9495 571 668
AF-A0A382IWD6-F1-model_v4 Thioredoxin domain-containing protein 0.9403 575 670 GO:0015035
GO:0045454
AF-A0A2E1N9H8-F1-model_v4 Disulfide bond formation protein DsbD 0.9351 563 669 GO:0015035
GO:0045454

Map