F167540

General Info

Members Datasets Scaffolds Average Seq Length
136 101 109 312

Family's Representative Sequence

Representative Sequence 3300046453|Ga0495627_002653|Ga0495627_002653_5630_6712
Length 360
Sequence MHALYRFVNIVGIACSNIYFYPIKKQYHNMKNIFRKATIKNSITVLKDTFNGFMADKGLKLSASLSYYTLFSLAPLLLLIISLASFFYGRDATEGRIFFEIRDLIGSDAAKQIQQVIKNLELSGKTTLSLIIGIFTLILGATTVFGEIQDSINMIWKVKAKPKKGWLKLIKDRLLSGSIIIGLGFLLIVSLIANGAIVALNDILKRWFPDFTLVIFNIINLAISFLVITILFGVIFKVLPDAKIKWKDVKAGAFFTACLFLLGRYLIGIYITTTGAGSPYGAAGSIIVILLWIYYTAAIMYFGAEFTRAFAIFKGRRIQPAEYAVYVEQREVEKEHGSITKHHVATPVIEETDHPKDTNA

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2721755487 Sphingobacterium sp. B29 Isolate Rhizosphere
3 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
4 2842903701 Olivibacter sp. R-72191 Isolate Unclassified
5 2881247448 Flavobacterium beibuense RSKm HC5 Isolate Rhizosphere
6 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
7 2890737413 Parapedobacter sp. SGR-10 Isolate Rhizosphere
8 2896317667 Sphingobacterium sp. SGR-19 Isolate Rhizosphere
9 2896344016 Sphingobacterium sp. SGL-16 Isolate Rhizosphere
10 2898713307 Sphingobacterium sp. SGG-5 Isolate Rhizosphere
11 2904780799 Sphingobacterium sp. 1304 Isolate Rhizosphere
12 2911138879 Spirosoma sp. KUDC1026 Isolate Rhizosphere
13 2919177583 Sphingobacterium sp. 2149 Isolate Rhizosphere
14 2929154850 Filimonas sp. R-72421 Hybrid assembly Isolate Unclassified
15 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
16 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
17 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
18 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
19 2958512119 Flavobacterium sp. Sd200 Isolate Rhizosphere
20 2965320100 Flavobacterium agri MAH-1 Isolate Rhizosphere
21 3003233435 Sphingobacterium shayense CrR18 Isolate Unclassified
22 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
23 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
24 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
25 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
26 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
27 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
28 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
29 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
30 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
31 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
32 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
33 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
34 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
35 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
36 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
37 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
38 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
39 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
40 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
41 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
42 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
43 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
44 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
45 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
46 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
47 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
48 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
49 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
50 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
51 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
52 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
53 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
55 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
60 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
61 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
62 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
63 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
64 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
65 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
66 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
67 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
68 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
69 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
70 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
71 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
72 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
73 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
74 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
75 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
76 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
77 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
78 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
79 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
80 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
81 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
82 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
83 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
84 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
85 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
86 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
87 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
89 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049673 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I13_A_3_drought Metagenome Rhizosphere
92 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
93 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
95 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
96 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
97 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
98 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
99 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
100 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified
101 8055588893 Parapedobacter lycopersici KACC 18788 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 80.15
Metatranscriptomes 0
Isolates 19.85

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 16.91
Nodule 0
Rhizoplane 0
Rhizosphere 59.56
Stem 0
Stem Tuber 0
Unclassified 23.53

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2555233 2162886007 Bacteria 3459
2 SwRhRL2b_contig_757763 2162886007 Bacteria 3135
3 JGI24740J21852_10002168 3300001979 Bacteria 8972
4 JGI24740J21852_10006463 3300001979 Unclassified 4849
5 JGI24739J22299_10000676 3300001989 Bacteria 12304
6 JGI25154J39366_1000006 3300002738 Bacteria 336396
7 JGI25153J46596_10001206 3300003215 Bacteria 15645
8 rootH2_10001891 3300003320 Bacteria 464318
9 rootH2_10014594 3300003320 Bacteria 4599
10 rootH1_10021581 3300003323 Bacteria 10139
11 rootH1_10036234 3300003323 Bacteria 13562
12 rootH1_10150537 3300003323 Bacteria 1493
13 rootH1_10264578 3300003323 Bacteria 1231
14 JGI25160J50197_1001496 3300003354 Bacteria 11612
15 JGI25160J50197_1028164 3300003354 Bacteria 1513
16 Ga0055528_1000077 3300003790 Bacteria 75704
17 Ga0055530_10002602 3300003791 Bacteria 11383
18 Ga0065165_1000042 3300005262 Bacteria 203874
19 Ga0065165_1018375 3300005262 Bacteria 2533
20 Ga0065714_10078124 3300005288 Bacteria 2627
21 Ga0065704_10071261 3300005289 Bacteria 12165
22 Ga0065704_10098933 3300005289 Bacteria 2327
23 Ga0070658_10027017 3300005327 Bacteria 4608
24 Ga0070663_100002978 3300005455 Bacteria 9655
25 Ga0068863_100141092 3300005841 Bacteria 2303
26 Ga0105240_10268884 3300009093 Bacteria 1964
27 Ga0105243_10000141 3300009148 Bacteria 82657
28 Ga0105239_10000026 3300010375 Bacteria 248302
29 Ga0157371_10080531 3300013102 Bacteria 2306
30 Ga0157370_10001649 3300013104 Bacteria 27558
31 Ga0157370_10053366 3300013104 Bacteria 3855
32 Ga0163162_10005346 3300013306 Bacteria 12396
33 Ga0157372_10016996 3300013307 Bacteria 7811
34 Ga0163161_10004844 3300017792 Bacteria 9376
35 Ga0163161_10005382 3300017792 Bacteria 8893
36 Ga0213876_10002620 3300021384 Bacteria 10507
37 Ga0209436_100856 3300025208 Bacteria 12234
38 Ga0209646_1000031 3300025246 Bacteria 381260
39 Ga0209026_1000019 3300025250 Bacteria 381260
40 Ga0209026_1007128 3300025250 Bacteria 2586
41 Ga0209673_1000684 3300025273 Bacteria 48675
42 Ga0209130_1002222 3300025284 Bacteria 10170
43 Ga0209564_1010342 3300025295 Bacteria 4311
44 Ga0209758_1002724 3300025297 Bacteria 17405
45 Ga0209758_1005238 3300025297 Bacteria 10159
46 Ga0209050_1000185 3300025298 Bacteria 141889
47 Ga0207426_1000024 3300025302 Bacteria 534075
48 Ga0207426_1000445 3300025302 Bacteria 66319
49 Ga0207426_1002460 3300025302 Bacteria 11790
50 Ga0209257_1000257 3300025304 Bacteria 122448
51 Ga0207652_10107724 3300025921 Bacteria 2468
52 Ga0207709_10000006 3300025935 Bacteria 800946
53 Ga0207709_10000072 3300025935 Bacteria 178084
54 Ga0207678_10020006 3300026067 Bacteria 5882
55 Ga0316177_1005282 3300030731 Bacteria 10014
56 Ga0316176_1040115 3300030732 Bacteria 64357
57 Ga0316183_1074350 3300030742 Bacteria 48608
58 Ga0316181_1186404 3300030744 Bacteria 29194
59 Ga0307408_100000209 3300031548 Bacteria 62437
60 Ga0307408_100000393 3300031548 Bacteria 39808
61 Ga0307408_100001007 3300031548 Bacteria 21740
62 Ga0307405_10005295 3300031731 Bacteria 6204
63 Ga0307413_10287555 3300031824 Bacteria 1240
64 Ga0307407_10184934 3300031903 Bacteria 1384
65 Ga0307412_10083524 3300031911 Bacteria 2214
66 Ga0307414_10010550 3300032004 Bacteria 5369
67 Ga0307414_10015793 3300032004 Bacteria 4570
68 Ga0307414_10026800 3300032004 Bacteria 3714
69 Ga0307411_10093112 3300032005 Bacteria 2109
70 Ga0373944_0068691 3300035089 Bacteria 1150
71 Ga0436365_1642374 3300039437 Bacteria 37274
72 Ga0436361_0545007 3300039447 Bacteria 17926
73 Ga0453684_0244014 3300044712 Bacteria 2066
74 Ga0495627_002653 3300046453 Bacteria 8402
75 Ga0495607_0026657 3300046501 Bacteria 3584
76 Ga0495616_0009554 3300046513 Bacteria 5663
77 Ga0495643_0001305 3300046522 Bacteria 23703
78 Ga0495643_0002586 3300046522 Bacteria 14123
79 Ga0495625_0046236 3300046660 Bacteria 3142
80 Ga0496116_0001546 3300048919 Bacteria 25478
81 Ga0496116_0002887 3300048919 Bacteria 17585
82 Ga0496117_0000407 3300048920 Bacteria 72427
83 Ga0496117_0002866 3300048920 Bacteria 20968
84 Ga0496118_0122117 3300048921 Bacteria 1695
85 Ga0496121_0000028 3300048924 Bacteria 439193
86 Ga0496122_0024041 3300048925 Bacteria 5344
87 Ga0496124_0027626 3300048927 Bacteria 5089
88 Ga0496125_0002608 3300048928 Bacteria 23127
89 Ga0496125_0150590 3300048928 Bacteria 1599
90 Ga0496126_0047297 3300048929 Bacteria 3939
91 Ga0496126_0234628 3300048929 Bacteria 1535
92 Ga0501034_0010395 3300049571 Bacteria 9698
93 Ga0501034_0013249 3300049571 Bacteria 8495
94 Ga0501034_0042389 3300049571 Bacteria 4607
95 Ga0501034_0397223 3300049571 Bacteria 1302
96 Ga0501036_0039728 3300049572 Bacteria 3981
97 Ga0501038_0141522 3300049574 Bacteria 1968
98 Ga0501047_0011068 3300049581 Bacteria 8537
99 Ga0501240_000347 3300049673 Unclassified 3667
100 Ga0501241_000484 3300049758 Bacteria 8637
101 Ga0501035_0047807 3300049822 Bacteria 3839
102 Ga0501044_0030948 3300049823 Bacteria 5635
103 Ga0501044_0048620 3300049823 Bacteria 4380
104 Ga0501044_0276494 3300049823 Bacteria 1614
105 Ga0500646_0001302 3300053090 Bacteria 6656
106 Ga0500641_0000554 3300053096 Bacteria 13497
107 Ga0500652_005767 3300053131 Bacteria 3931
108 Ga0500568_0028313 3300053139 Bacteria 2336
109 Ga0500622_0035005 3300053156 Bacteria 2629

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300003323 rootH1_10264578 rootH1_102645782 258
2 3300003320 rootH2_10014594 rootH2_100145942 261
3 3300003323 rootH1_10021581 rootH1_100215815 261
4 3300025208 Ga0209436_100856 Ga0209436_1008565 269
5 3300025284 Ga0209130_1002222 Ga0209130_10022223 269
6 3300025302 Ga0207426_1000024 Ga0207426_1000024447 269
7 3300048929 Ga0496126_0234628 Ga0496126_0234628_576_1466 278
8 3300003323 rootH1_10150537 rootH1_101505372 291
9 3300005841 Ga0068863_100141092 Ga0068863_1001410922 291
10 3300035089 Ga0373944_0068691 Ga0373944_0068691_163_1116 291
11 3300002738 JGI25154J39366_1000006 JGI25154J39366_100000669 292
12 3300003215 JGI25153J46596_10001206 JGI25153J46596_1000120617 292
13 3300003354 JGI25160J50197_1028164 JGI25160J50197_10281642 292
14 3300005262 Ga0065165_1018375 Ga0065165_10183753 292
15 3300025246 Ga0209646_1000031 Ga0209646_1000031102 292
16 3300025250 Ga0209026_1000019 Ga0209026_1000019102 292
17 3300025297 Ga0209758_1002724 Ga0209758_10027242 292
18 3300025302 Ga0207426_1000445 Ga0207426_100044546 292
19 3300049581 Ga0501047_0011068 Ga0501047_0011068_6728_7654 292
20 3300049823 Ga0501044_0276494 Ga0501044_0276494_149_1075 292
21 3300003323 rootH1_10036234 rootH1_100362348 293
22 3300005289 Ga0065704_10098933 Ga0065704_100989333 294
23 3300025935 Ga0207709_10000072 Ga0207709_10000072108 294
24 3300032004 Ga0307414_10026800 Ga0307414_100268001 297
25 3300021384 Ga0213876_10002620 Ga0213876_100026207 298
26 3300039437 Ga0436365_1642374 Ga0436365_1642374_1262_2254 298
27 3300049758 Ga0501241_000484 Ga0501241_000484_5586_6554 299
28 3300010375 Ga0105239_10000026 Ga0105239_10000026156 300
29 iso_pu_bacteria 2896317667 2896321460 300
30 iso_pu_bacteria 2929921140 2929921427 302
31 iso_pu_bacteria 8003151029 8003151972 302
32 3300017792 Ga0163161_10004844 Ga0163161_100048448 304
33 3300032004 Ga0307414_10015793 Ga0307414_100157931 304
34 3300001989 JGI24739J22299_10000676 JGI24739J22299_100006769 305
35 3300003354 JGI25160J50197_1001496 JGI25160J50197_10014965 305
36 3300003790 Ga0055528_1000077 Ga0055528_100007739 305
37 3300003791 Ga0055530_10002602 Ga0055530_1000260210 305
38 3300005262 Ga0065165_1000042 Ga0065165_100004259 305
39 3300013102 Ga0157371_10080531 Ga0157371_100805312 305
40 3300025273 Ga0209673_1000684 Ga0209673_100068449 305
41 3300025295 Ga0209564_1010342 Ga0209564_10103422 305
42 3300025297 Ga0209758_1005238 Ga0209758_10052387 305
43 3300025298 Ga0209050_1000185 Ga0209050_100018566 305
44 3300025302 Ga0207426_1002460 Ga0207426_10024608 305
45 3300025304 Ga0209257_1000257 Ga0209257_10002572 305
46 3300001979 JGI24740J21852_10002168 JGI24740J21852_100021688 306
47 3300003320 rootH2_10001891 rootH2_10001891127 306
48 3300053131 Ga0500652_005767 Ga0500652_005767_450_1376 306
49 3300053139 Ga0500568_0028313 Ga0500568_0028313_863_1789 306
50 iso_pu_bacteria 2818991460 2819677250 306
51 iso_pu_bacteria 2929177148 2929177341 306
52 iso_pu_bacteria 2945977869 2945979707 306
53 iso_pu_bacteria 2946013367 2946014425 306
54 3300009093 Ga0105240_10268884 Ga0105240_102688842 307
55 iso_pu_bacteria 2884791551 2884797114 307
56 3300048928 Ga0496125_0002608 Ga0496125_0002608_16948_17901 308
57 3300048929 Ga0496126_0047297 Ga0496126_0047297_2463_3416 308
58 3300049571 Ga0501034_0010395 Ga0501034_0010395_6322_7248 308
59 3300049571 Ga0501034_0013249 Ga0501034_0013249_2859_3785 308
60 3300049571 Ga0501034_0397223 Ga0501034_0397223_365_1291 308
61 3300049823 Ga0501044_0030948 Ga0501044_0030948_1781_2707 308
62 3300049823 Ga0501044_0048620 Ga0501044_0048620_2687_3613 308
63 3300005288 Ga0065714_10078124 Ga0065714_100781241 309
64 3300025250 Ga0209026_1007128 Ga0209026_10071281 310
65 3300044712 Ga0453684_0244014 Ga0453684_0244014_893_1825 310
66 3300048924 Ga0496121_0000028 Ga0496121_0000028_360526_361491 310
67 iso_pu_bacteria 8055588893 8055590950 310
68 3300025921 Ga0207652_10107724 Ga0207652_101077242 311
69 3300053090 Ga0500646_0001302 Ga0500646_0001302_3405_4340 311
70 3300053156 Ga0500622_0035005 Ga0500622_0035005_1369_2304 311
71 iso_pu_bacteria 2958512119 2958513658 311
72 iso_pu_bacteria 2965320100 2965320468 311
73 2162886007 SwRhRL2b_contig_757763 SwRhRL2b_0912.00005770 313
74 3300009148 Ga0105243_10000141 Ga0105243_1000014119 313
75 iso_pu_bacteria 2842903701 2842903846 314
76 3300001979 JGI24740J21852_10006463 JGI24740J21852_100064639 315
77 3300005455 Ga0070663_100002978 Ga0070663_10000297814 315
78 3300026067 Ga0207678_10020006 Ga0207678_100200065 315
79 iso_pu_bacteria 2929154850 2929158590 315
80 3300013104 Ga0157370_10001649 Ga0157370_1000164921 316
81 3300013306 Ga0163162_10005346 Ga0163162_100053464 316
82 3300046522 Ga0495643_0001305 Ga0495643_0001305_15919_16869 316
83 3300049673 Ga0501240_000347 Ga0501240_000347_316_1266 316
84 3300053096 Ga0500641_0000554 Ga0500641_0000554_8799_9749 316
85 iso_pu_bacteria 2881247448 2881249822 316
86 iso_pu_bacteria 2958512119 2958512282 316
87 3300031824 Ga0307413_10287555 Ga0307413_102875552 317
88 3300031903 Ga0307407_10184934 Ga0307407_101849341 317
89 3300032005 Ga0307411_10093112 Ga0307411_100931121 317
90 3300030731 Ga0316177_1005282 Ga0316177_10052825 318
91 3300030732 Ga0316176_1040115 Ga0316176_104011521 318
92 3300030742 Ga0316183_1074350 Ga0316183_107435028 318
93 3300030744 Ga0316181_1186404 Ga0316181_118640433 318
94 3300031548 Ga0307408_100000393 Ga0307408_10000039314 318
95 3300031548 Ga0307408_100001007 Ga0307408_10000100715 318
96 3300046513 Ga0495616_0009554 Ga0495616_0009554_86_1051 319
97 3300046522 Ga0495643_0002586 Ga0495643_0002586_6053_7018 319
98 iso_pu_bacteria 2911138879 2911138960 319
99 iso_pu_bacteria 3003233435 3003234650 319
100 3300013307 Ga0157372_10016996 Ga0157372_1001699610 320
101 3300049572 Ga0501036_0039728 Ga0501036_0039728_350_1312 320
102 3300049574 Ga0501038_0141522 Ga0501038_0141522_768_1730 320
103 3300049822 Ga0501035_0047807 Ga0501035_0047807_1939_2901 320
104 3300031548 Ga0307408_100000209 Ga0307408_10000020938 321
105 3300046501 Ga0495607_0026657 Ga0495607_0026657_2567_3538 321
106 3300046660 Ga0495625_0046236 Ga0495625_0046236_1429_2442 322
107 3300031731 Ga0307405_10005295 Ga0307405_100052955 323
108 3300031911 Ga0307412_10083524 Ga0307412_100835242 323
109 3300039447 Ga0436361_0545007 Ga0436361_0545007_13639_14709 323
110 iso_pu_bacteria 2721755487 2722729729 323
111 iso_pu_bacteria 2721755487 2722730242 323
112 3300048919 Ga0496116_0001546 Ga0496116_0001546_6519_7496 324
113 3300048920 Ga0496117_0002866 Ga0496117_0002866_4258_5235 324
114 3300048928 Ga0496125_0150590 Ga0496125_0150590_26_1003 324
115 iso_pu_bacteria 2896344016 2896346280 324
116 iso_pu_bacteria 2904780799 2904783885 324
117 iso_pu_bacteria 2919177583 2919181823 324
118 3300005327 Ga0070658_10027017 Ga0070658_100270175 325
119 3300017792 Ga0163161_10005382 Ga0163161_100053824 325
120 3300048919 Ga0496116_0002887 Ga0496116_0002887_1122_2123 325
121 3300048920 Ga0496117_0000407 Ga0496117_0000407_52645_53646 325
122 3300048921 Ga0496118_0122117 Ga0496118_0122117_316_1317 325
123 3300048925 Ga0496122_0024041 Ga0496122_0024041_1801_2802 325
124 3300048927 Ga0496124_0027626 Ga0496124_0027626_1809_2810 325
125 iso_pu_bacteria 2890737413 2890739497 325
126 iso_pu_bacteria 2896344016 2896346719 325
127 iso_pu_bacteria 2898713307 2898716441 325
128 3300032004 Ga0307414_10010550 Ga0307414_100105502 326
129 3300013104 Ga0157370_10053366 Ga0157370_100533663 328
130 iso_pu_bacteria 2904780799 2904784269 329
131 iso_pu_bacteria 2919177583 2919179107 329
132 3300046453 Ga0495627_002653 Ga0495627_002653_5630_6712 331
133 3300049571 Ga0501034_0042389 Ga0501034_0042389_1751_2767 332
134 3300005289 Ga0065704_10071261 Ga0065704_1007126113 333
135 3300025935 Ga0207709_10000006 Ga0207709_10000006375 333
136 2162886007 SwRhRL2b_contig_2555233 SwRhRL2b_0209.00007610 336

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03631

Virul_fac_BrkB

Virulence factor BrkB

54

313

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
6d79-assembly1.cif.gz_A structure of cysz, a sulfate permease from pseudomonas fragi 0.3659 31 276
6d79-assembly1.cif.gz_A structure of cysz, a sulfate permease from pseudomonas fragi 0.3593 31 276
1knz-assembly4.cif.gz_N recognition of the rotavirus mrna 3' consensus by an asymmetric nsp3 homodimer 0.32 32 136
8aud-assembly2.cif.gz_B structure of peptidoglycan hydrolase cg1735 from corynebacterium glutamicum, orthorhombic crystal form 0.2958 11 170
8aud-assembly1.cif.gz_A structure of peptidoglycan hydrolase cg1735 from corynebacterium glutamicum, orthorhombic crystal form 0.2738 10 181
ID Description Score Start End Superfamily
af_Q9W189_41_417_1.20.1070.10 Mainly Alpha;Up-down Bundle;Rhopdopsin 7-helix transmembrane proteins;Rhodopsin 7-helix transmembrane proteins 0.3829 221 291 1.20.1070.10
af_O61983_9_316_1.20.1070.10 Mainly Alpha;Up-down Bundle;Rhopdopsin 7-helix transmembrane proteins;Rhodopsin 7-helix transmembrane proteins 0.3512 183 284 1.20.1070.10
af_Q9NUN7_9_263_1.20.1070.10 Mainly Alpha;Up-down Bundle;Rhopdopsin 7-helix transmembrane proteins;Rhodopsin 7-helix transmembrane proteins 0.3491 103 290 1.20.1070.10
af_A8JV32_271_458_1.10.357.20 Mainly Alpha;Orthogonal Bundle;Tetracycline Repressor; domain 2;SLC41 divalent cation transporters, integral membrane domain 0.3356 101 279 1.10.357.20
af_A8JV32_271_458_1.10.357.20 Mainly Alpha;Orthogonal Bundle;Tetracycline Repressor; domain 2;SLC41 divalent cation transporters, integral membrane domain 0.3276 101 279 1.10.357.20
ID Description Score Start End GO Terms
AF-A0A7X7C4E3-F1-model_v4 YihY/virulence factor BrkB family protein 0.9475 108 314 GO:0005886
AF-A0A7X7C4E3-F1-model_v4 YihY/virulence factor BrkB family protein 0.9344 108 314 GO:0005886
AF-A0A1F9XJE3-F1-model_v4 Uncharacterized protein 0.9309 18 290 GO:0005886
AF-A0A838PZR1-F1-model_v4 YihY/virulence factor BrkB family protein 0.9288 15 301 GO:0005886
AF-A0A431VQM1-F1-model_v4 YihY/virulence factor BrkB family protein 0.9188 14 287 GO:0005886

Feature Viewer

pLDDT pTM Quality
71.25 0.71 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map