F170455

General Info

Members Datasets Scaffolds Average Seq Length
137 97 134 600

Family's Representative Sequence

Representative Sequence 3300035084|Ga0373928_0000145|Ga0373928_0000145_3991_5946
Length 651
Sequence MMLFGEQAIGGANLHVGAAPVETERGVMIWQWRLQRRKSSGRLARGNVSDILTTVSMKKISNIAAYKFVELPDLRSLRARLLALCRGWELKGTILLSLEGINLFVAGEREKIDLLLAELRSLPGLEDLQPKFSETDHQPFRRMLVRLKNEIIAFGVEGINPAQRTSPKLAAKELKQWLDEGRPVTLLDTRNDYEVKLGTFKNALPIGVDHFRDFPAAVAKLSPAMKEQPIVMFCTGGIRCEKAGPFMEREGFTKIFQLDGGILKYFEECGGAHYDGECFVFDQRVGLDPSLQETESTQCFRCQTPLSEADQADARYVPGQSCPYCFKTPAEQMAQNIAARHEAVRRAVTPLPGSQPHDNYKSINVPEDCDGKTLLETLCRVVKNVSAEKWEAECAAGLVVNLERKPVLPAKVVRAGERYRHIFPNVTEPDVNGAVEILHEDEALIVMNKPAPLPMHAGGRFYRNTLQHILNEVYHPQKPHPAHRLDANTTGLVLVTRTRHFAAKLQPQFVRGQVEKTYLVRVQGQPVADAFSCDAPISGESGELGSRTVDETDGQSARTEFRVLKRHADGTALLEARPLTGRTNQIRVHLWHLGFPICGDAVYLADKKIGSTQTLAVGDPPLCLHAWRVKFIHPLSQQPMAFTAPLPAWAE

Samples

Sample ID Description Type Environment
1 2684623219 Planctomyces sp. SH-PL14 Isolate Unclassified
2 2687453341 Pirellula sp. SH-Sr6A Isolate Unclassified
3 2786546548 Spartobacteria bacterium LR76 Isolate Unclassified
4 3300002155 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX- M7 Metagenome Rhizosphere
5 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
6 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
7 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
8 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
9 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
10 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
11 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
12 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
13 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
14 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
15 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
16 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
17 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
18 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
19 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
20 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
21 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
22 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
23 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
24 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
25 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
26 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
27 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
28 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
29 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
30 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
31 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
32 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
33 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
34 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
50 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
51 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
52 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
53 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
54 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
55 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
56 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
57 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
58 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
59 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
60 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
61 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
62 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
63 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
64 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
65 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
66 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
67 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
68 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
69 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
70 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
71 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
72 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
73 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
74 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
75 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
76 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
77 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
78 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
79 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
80 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
81 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
82 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
83 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
84 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
85 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
86 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
87 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
88 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
93 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
94 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
95 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
96 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
97 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.81
Metatranscriptomes 0
Isolates 2.19

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.65
Nodule 0
Rhizoplane 1.46
Rhizosphere 74.45
Stem 0
Stem Tuber 0
Unclassified 20.44

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24033J26618_1001338 3300002155 Bacteria 2436
2 rootH1_10014946 3300003316 Bacteria 5019
3 rootH1_10121574 3300003316 Bacteria 2457
4 rootH2_10017229 3300003320 Bacteria 26925
5 rootL2_10129162 3300003322 Bacteria 7477
6 Ga0065704_10076283 3300005289 Bacteria 5187
7 Ga0065704_10082262 3300005289 Bacteria 3628
8 Ga0065704_10095871 3300005289 Bacteria 2469
9 Ga0065707_10082005 3300005295 Bacteria 25368
10 Ga0070661_100001462 3300005344 Bacteria 16403
11 Ga0070659_100039867 3300005366 Bacteria 3668
12 Ga0070678_100000341 3300005456 Bacteria 21825
13 Ga0070665_100000459 3300005548 Bacteria 59388
14 Ga0070665_100001874 3300005548 Bacteria 23885
15 Ga0070665_100022515 3300005548 Bacteria 6342
16 Ga0070665_100031517 3300005548 Bacteria 5336
17 Ga0068856_100000211 3300005614 Bacteria 63015
18 Ga0068856_100101261 3300005614 Bacteria 2873
19 Ga0068859_100000080 3300005617 Bacteria 88520
20 Ga0068859_100018079 3300005617 Bacteria 7084
21 Ga0068863_100001031 3300005841 Bacteria 27841
22 Ga0068863_100013965 3300005841 Bacteria 7741
23 Ga0068863_100050712 3300005841 Bacteria 3933
24 Ga0068863_100186585 3300005841 Bacteria 1992
25 Ga0068858_100002293 3300005842 Bacteria 19364
26 Ga0068860_100003331 3300005843 Bacteria 16539
27 Ga0068862_100023375 3300005844 Bacteria 5179
28 Ga0081455_10038460 3300005937 Bacteria 4237
29 Ga0097620_100000080 3300006931 Bacteria 88520
30 Ga0097620_100018079 3300006931 Bacteria 7084
31 Ga0105240_10000022 3300009093 Bacteria 387911
32 Ga0105240_10042098 3300009093 Bacteria 5823
33 Ga0105247_10000535 3300009101 Bacteria 30831
34 Ga0105238_10000357 3300009551 Bacteria 48927
35 Ga0105238_10019869 3300009551 Bacteria 6838
36 Ga0105238_10033699 3300009551 Bacteria 5211
37 Ga0105249_10005405 3300009553 Bacteria 11028
38 Ga0105239_10006045 3300010375 Bacteria 14092
39 Ga0157373_10001412 3300013100 Bacteria 18328
40 Ga0157374_10000071 3300013296 Bacteria 102927
41 Ga0157378_10014374 3300013297 Bacteria 6931
42 Ga0163162_10020515 3300013306 Bacteria 6493
43 Ga0163163_10059110 3300014325 Bacteria 3791
44 Ga0163163_10072815 3300014325 Bacteria 3425
45 Ga0157379_10021156 3300014968 Bacteria 5756
46 Ga0157379_10169103 3300014968 Bacteria 1973
47 Ga0157376_10000170 3300014969 Bacteria 45040
48 Ga0207710_10000480 3300025900 Bacteria 25329
49 Ga0207710_10021840 3300025900 Bacteria 2745
50 Ga0207705_10045972 3300025909 Bacteria 3137
51 Ga0207695_10000022 3300025913 Bacteria 659090
52 Ga0207695_10161241 3300025913 Bacteria 2174
53 Ga0207671_10032775 3300025914 Bacteria 3866
54 Ga0207649_10002547 3300025920 Bacteria 10149
55 Ga0207694_10010707 3300025924 Bacteria 6924
56 Ga0207644_10005358 3300025931 Bacteria 8369
57 Ga0207703_10000563 3300026035 Bacteria 38142
58 Ga0207678_10086823 3300026067 Bacteria 2673
59 Ga0207702_10007619 3300026078 Bacteria 9215
60 Ga0207702_10063912 3300026078 Bacteria 3149
61 Ga0207641_10000174 3300026088 Bacteria 89117
62 Ga0207641_10125047 3300026088 Bacteria 2301
63 Ga0207675_100078594 3300026118 Bacteria 3091
64 Ga0268266_10000496 3300028379 Bacteria 56210
65 Ga0268266_10002788 3300028379 Bacteria 18226
66 Ga0268266_10004664 3300028379 Bacteria 13062
67 Ga0268266_10015222 3300028379 Bacteria 6606
68 Ga0268265_10025052 3300028380 Bacteria 4229
69 Ga0268264_10001647 3300028381 Bacteria 20631
70 Ga0265334_10030395 3300028573 Bacteria 2162
71 Ga0307515_10011982 3300028794 Bacteria 16371
72 Ga0265338_10000546 3300028800 Bacteria 65848
73 Ga0265338_10019159 3300028800 Bacteria 7281
74 Ga0307511_10000112 3300030521 Bacteria 73319
75 Ga0265331_10016746 3300031250 Bacteria 3841
76 Ga0265327_10003229 3300031251 Bacteria 15858
77 Ga0265327_10004358 3300031251 Bacteria 12581
78 Ga0265327_10012987 3300031251 Bacteria 5569
79 Ga0307509_10000038 3300031507 Bacteria 188458
80 Ga0307408_100002634 3300031548 Bacteria 12474
81 Ga0307406_10000890 3300031901 Bacteria 16782
82 Ga0307409_100007484 3300031995 Bacteria 6537
83 Ga0307510_10000008 3300033180 Bacteria 433990
84 Ga0307510_10016213 3300033180 Bacteria 8800
85 Ga0373928_0000145 3300035084 Bacteria 13535
86 Ga0373944_0000445 3300035089 Bacteria 9570
87 Ga0373949_0003182 3300035090 Bacteria 3992
88 Ga0373951_0001048 3300035091 Bacteria 7418
89 Ga0373932_0000006 3300035112 Bacteria 208547
90 Ga0373936_0003961 3300035113 Bacteria 5583
91 Ga0373945_0008280 3300035116 Bacteria 3383
92 Ga0373962_0000235 3300035242 Bacteria 11674
93 Ga0373931_0000009 3300035691 Bacteria 349854
94 Ga0373935_0012555 3300035692 Bacteria 5097
95 Ga0373927_0013634 3300035695 Bacteria 5396
96 Ga0373925_0000235 3300037068 Bacteria 58451
97 Ga0395901_0067284 3300038443 Bacteria 3731
98 Ga0495632_0044026 3300046519 Bacteria 2229
99 Ga0495672_0067869 3300047320 Bacteria 2030
100 Ga0496103_0045453 3300048906 Bacteria 2710
101 Ga0496115_0029340 3300048918 Bacteria 4320
102 Ga0496116_0035764 3300048919 Bacteria 3485
103 Ga0496117_0000044 3300048920 Bacteria 301076
104 Ga0496118_0000025 3300048921 Bacteria 379363
105 Ga0496119_0002747 3300048922 Bacteria 18941
106 Ga0496119_0003173 3300048922 Bacteria 17253
107 Ga0496120_0000098 3300048923 Bacteria 145165
108 Ga0496120_0033834 3300048923 Bacteria 3067
109 Ga0496121_0002038 3300048924 Bacteria 31981
110 Ga0496124_0045260 3300048927 Bacteria 3773
111 Ga0496125_0000726 3300048928 Bacteria 54615
112 Ga0496125_0022476 3300048928 Bacteria 5855
113 Ga0496125_0050525 3300048928 Bacteria 3442
114 Ga0496126_0007006 3300048929 Bacteria 12448
115 Ga0496126_0027139 3300048929 Bacteria 5476
116 Ga0496126_0051372 3300048929 Bacteria 3753
117 Ga0496126_0096723 3300048929 Bacteria 2588
118 Ga0501032_0003528 3300049569 Bacteria 11945
119 Ga0501033_0000001 3300049570 Bacteria 795921
120 Ga0501034_0002654 3300049571 Bacteria 21166
121 Ga0501034_0073175 3300049571 Bacteria 3436
122 Ga0501038_0002183 3300049574 Bacteria 18187
123 Ga0501043_0041599 3300049579 Bacteria 3611
124 Ga0501046_0062982 3300049580 Bacteria 2897
125 Ga0501046_0097352 3300049580 Bacteria 2260
126 Ga0501067_0011749 3300049583 Bacteria 4850
127 Ga0501070_0000182 3300049586 Bacteria 58986
128 Ga0501080_0001644 3300049742 Bacteria 19030
129 Ga0501080_0020075 3300049742 Bacteria 6185
130 Ga0500556_0007943 3300053104 Bacteria 3047
131 Ga0500616_0000011 3300053153 Bacteria 732880
132 Ga0500616_0013728 3300053153 Bacteria 4685
133 Ga0500622_0001417 3300053156 Bacteria 19309
134 Ga0500622_0030087 3300053156 Bacteria 2852

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049571 Ga0501034_0073175 Ga0501034_0073175_71_1639 511
2 3300049742 Ga0501080_0001644 Ga0501080_0001644_17400_18968 521
3 3300005548 Ga0070665_100022515 Ga0070665_1000225152 562
4 3300028379 Ga0268266_10015222 Ga0268266_100152222 562
5 3300003316 rootH1_10014946 rootH1_100149464 572
6 3300049571 Ga0501034_0002654 Ga0501034_0002654_2664_4454 582
7 3300005289 Ga0065704_10076283 Ga0065704_100762836 584
8 iso_pu_bacteria 2687453341 2688393366 587
9 iso_pu_bacteria 2786546548 2787509489 589
10 iso_pu_bacteria 2684623219 2687236626 590
11 3300005289 Ga0065704_10082262 Ga0065704_100822622 591
12 3300005841 Ga0068863_100186585 Ga0068863_1001865852 591
13 3300005295 Ga0065707_10082005 Ga0065707_1008200510 593
14 3300005614 Ga0068856_100101261 Ga0068856_1001012612 593
15 3300005617 Ga0068859_100018079 Ga0068859_1000180797 593
16 3300005841 Ga0068863_100013965 Ga0068863_1000139656 593
17 3300005841 Ga0068863_100050712 Ga0068863_1000507125 593
18 3300005843 Ga0068860_100003331 Ga0068860_1000033315 593
19 3300006931 Ga0097620_100018079 Ga0097620_1000180792 593
20 3300009551 Ga0105238_10033699 Ga0105238_100336992 593
21 3300013100 Ga0157373_10001412 Ga0157373_100014124 593
22 3300025900 Ga0207710_10021840 Ga0207710_100218403 593
23 3300025909 Ga0207705_10045972 Ga0207705_100459722 593
24 3300025914 Ga0207671_10032775 Ga0207671_100327752 593
25 3300026067 Ga0207678_10086823 Ga0207678_100868232 593
26 3300026078 Ga0207702_10063912 Ga0207702_100639122 593
27 3300026088 Ga0207641_10000174 Ga0207641_100001744 593
28 3300026088 Ga0207641_10125047 Ga0207641_101250472 593
29 3300028381 Ga0268264_10001647 Ga0268264_100016478 593
30 3300033180 Ga0307510_10016213 Ga0307510_100162135 593
31 3300048928 Ga0496125_0000726 Ga0496125_0000726_23110_24894 593
32 3300048929 Ga0496126_0051372 Ga0496126_0051372_516_2300 593
33 3300053104 Ga0500556_0007943 Ga0500556_0007943_514_2298 593
34 3300003316 rootH1_10121574 rootH1_101215742 594
35 3300003322 rootL2_10129162 rootL2_101291627 594
36 3300005289 Ga0065704_10095871 Ga0065704_100958711 594
37 3300005548 Ga0070665_100000459 Ga0070665_1000004595 594
38 3300005548 Ga0070665_100031517 Ga0070665_1000315174 594
39 3300005614 Ga0068856_100000211 Ga0068856_10000021160 594
40 3300005844 Ga0068862_100023375 Ga0068862_1000233755 594
41 3300009093 Ga0105240_10042098 Ga0105240_100420983 594
42 3300009551 Ga0105238_10019869 Ga0105238_100198694 594
43 3300010375 Ga0105239_10006045 Ga0105239_100060454 594
44 3300014325 Ga0163163_10059110 Ga0163163_100591102 594
45 3300025913 Ga0207695_10161241 Ga0207695_101612412 594
46 3300025924 Ga0207694_10010707 Ga0207694_100107072 594
47 3300026035 Ga0207703_10000563 Ga0207703_1000056325 594
48 3300026078 Ga0207702_10007619 Ga0207702_100076193 594
49 3300028379 Ga0268266_10000496 Ga0268266_1000049610 594
50 3300028379 Ga0268266_10004664 Ga0268266_100046647 594
51 3300028380 Ga0268265_10025052 Ga0268265_100250522 594
52 3300031251 Ga0265327_10003229 Ga0265327_100032298 594
53 3300033180 Ga0307510_10000008 Ga0307510_10000008314 594
54 3300035084 Ga0373928_0000145 Ga0373928_0000145_3991_5946 594
55 3300035089 Ga0373944_0000445 Ga0373944_0000445_4898_6853 594
56 3300035090 Ga0373949_0003182 Ga0373949_0003182_12_1799 594
57 3300035091 Ga0373951_0001048 Ga0373951_0001048_3338_5293 594
58 3300035112 Ga0373932_0000006 Ga0373932_0000006_134499_136454 594
59 3300035116 Ga0373945_0008280 Ga0373945_0008280_857_2812 594
60 3300035242 Ga0373962_0000235 Ga0373962_0000235_5533_7488 594
61 3300035691 Ga0373931_0000009 Ga0373931_0000009_132814_134769 594
62 3300035692 Ga0373935_0012555 Ga0373935_0012555_1260_3047 594
63 3300035695 Ga0373927_0013634 Ga0373927_0013634_2013_3968 594
64 3300037068 Ga0373925_0000235 Ga0373925_0000235_31582_33537 594
65 3300046519 Ga0495632_0044026 Ga0495632_0044026_39_1826 594
66 3300048906 Ga0496103_0045453 Ga0496103_0045453_569_2356 594
67 3300048919 Ga0496116_0035764 Ga0496116_0035764_627_2414 594
68 3300048920 Ga0496117_0000044 Ga0496117_0000044_126552_128339 594
69 3300048921 Ga0496118_0000025 Ga0496118_0000025_73673_75460 594
70 3300048922 Ga0496119_0002747 Ga0496119_0002747_10581_12368 594
71 3300048922 Ga0496119_0003173 Ga0496119_0003173_6092_7879 594
72 3300048923 Ga0496120_0000098 Ga0496120_0000098_91370_93157 594
73 3300048923 Ga0496120_0033834 Ga0496120_0033834_1025_2812 594
74 3300048927 Ga0496124_0045260 Ga0496124_0045260_100_1887 594
75 3300048928 Ga0496125_0022476 Ga0496125_0022476_372_2159 594
76 3300048929 Ga0496126_0027139 Ga0496126_0027139_2018_3805 594
77 3300048929 Ga0496126_0096723 Ga0496126_0096723_110_1897 594
78 3300049580 Ga0501046_0062982 Ga0501046_0062982_1025_2812 594
79 3300049742 Ga0501080_0020075 Ga0501080_0020075_1746_3548 594
80 3300053153 Ga0500616_0013728 Ga0500616_0013728_924_2717 594
81 3300028794 Ga0307515_10011982 Ga0307515_1001198215 595
82 3300031251 Ga0265327_10012987 Ga0265327_100129873 595
83 3300035113 Ga0373936_0003961 Ga0373936_0003961_1517_3307 595
84 3300047320 Ga0495672_0067869 Ga0495672_0067869_26_1828 595
85 3300048928 Ga0496125_0050525 Ga0496125_0050525_653_2455 595
86 3300005344 Ga0070661_100001462 Ga0070661_10000146212 596
87 3300005366 Ga0070659_100039867 Ga0070659_1000398671 596
88 3300005548 Ga0070665_100001874 Ga0070665_1000018745 596
89 3300005937 Ga0081455_10038460 Ga0081455_100384603 596
90 3300025920 Ga0207649_10002547 Ga0207649_100025472 596
91 3300028379 Ga0268266_10002788 Ga0268266_1000278814 596
92 3300028573 Ga0265334_10030395 Ga0265334_100303951 596
93 3300031250 Ga0265331_10016746 Ga0265331_100167463 596
94 3300031251 Ga0265327_10004358 Ga0265327_100043581 596
95 3300031548 Ga0307408_100002634 Ga0307408_1000026348 596
96 3300031901 Ga0307406_10000890 Ga0307406_100008905 596
97 3300031995 Ga0307409_100007484 Ga0307409_1000074842 596
98 3300048918 Ga0496115_0029340 Ga0496115_0029340_1096_2889 596
99 3300048929 Ga0496126_0007006 Ga0496126_0007006_3152_4945 596
100 3300049579 Ga0501043_0041599 Ga0501043_0041599_1434_3308 596
101 3300049580 Ga0501046_0097352 Ga0501046_0097352_89_1963 596
102 3300049586 Ga0501070_0000182 Ga0501070_0000182_38480_40354 596
103 3300053153 Ga0500616_0000011 Ga0500616_0000011_592743_594536 596
104 3300053156 Ga0500622_0001417 Ga0500622_0001417_3127_4920 596
105 3300053156 Ga0500622_0030087 Ga0500622_0030087_473_2266 596
106 3300013296 Ga0157374_10000071 Ga0157374_1000007143 597
107 3300013297 Ga0157378_10014374 Ga0157378_100143747 597
108 3300014969 Ga0157376_10000170 Ga0157376_1000017024 597
109 3300030521 Ga0307511_10000112 Ga0307511_100001123 597
110 3300002155 JGI24033J26618_1001338 JGI24033J26618_10013382 598
111 3300003320 rootH2_10017229 rootH2_1001722924 598
112 3300005456 Ga0070678_100000341 Ga0070678_10000034121 598
113 3300005617 Ga0068859_100000080 Ga0068859_10000008055 598
114 3300005841 Ga0068863_100001031 Ga0068863_10000103120 598
115 3300005842 Ga0068858_100002293 Ga0068858_1000022932 598
116 3300006931 Ga0097620_100000080 Ga0097620_10000008029 598
117 3300009093 Ga0105240_10000022 Ga0105240_10000022192 598
118 3300009101 Ga0105247_10000535 Ga0105247_1000053517 598
119 3300009551 Ga0105238_10000357 Ga0105238_1000035731 598
120 3300009553 Ga0105249_10005405 Ga0105249_100054059 598
121 3300013306 Ga0163162_10020515 Ga0163162_100205156 598
122 3300014325 Ga0163163_10072815 Ga0163163_100728153 598
123 3300014968 Ga0157379_10021156 Ga0157379_100211565 598
124 3300014968 Ga0157379_10169103 Ga0157379_101691031 598
125 3300025900 Ga0207710_10000480 Ga0207710_1000048012 598
126 3300025913 Ga0207695_10000022 Ga0207695_10000022326 598
127 3300025931 Ga0207644_10005358 Ga0207644_100053582 598
128 3300026118 Ga0207675_100078594 Ga0207675_1000785943 598
129 3300028800 Ga0265338_10000546 Ga0265338_1000054643 598
130 3300028800 Ga0265338_10019159 Ga0265338_100191593 598
131 3300031507 Ga0307509_10000038 Ga0307509_1000003879 598
132 3300038443 Ga0395901_0067284 Ga0395901_0067284_864_2684 598
133 3300048924 Ga0496121_0002038 Ga0496121_0002038_19469_21280 598
134 3300049569 Ga0501032_0003528 Ga0501032_0003528_2073_3869 598
135 3300049570 Ga0501033_0000001 Ga0501033_0000001_691174_692970 598
136 3300049574 Ga0501038_0002183 Ga0501038_0002183_2003_3811 598
137 3300049583 Ga0501067_0011749 Ga0501067_0011749_2770_4578 598

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF17773

UPF0176_N

UPF0176 acylphosphatase like domain

60

151

0.98

PF00849

PseudoU_synth_2

RNA pseudouridylate synthase

443

592

0.97

PF00581

Rhodanese

Rhodanese-like domain

170

268

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
4f67-assembly1.cif.gz_A three dimensional structure of the double mutant of upf0176 protein lpg2838 from legionella pneumophila at the resolution 1.8a, northeast structural genomics consortium (nesg) target lgr82 0.9364 2 238
2i82-assembly2.cif.gz_B crystal structure of pseudouridine synthase rlua: indirect sequence readout through protein-induced rna structure 0.8989 375 587
3gk5-assembly1.cif.gz_A crystal structure of rhodanese-related protein (tvg0868615) from thermoplasma volcanium, northeast structural genomics consortium target tvr109a 0.8981 111 212
3iwh-assembly1.cif.gz_A crystal structure of rhodanese-like domain protein from staphylococcus aureus 0.8937 111 208
3foj-assembly1.cif.gz_A crystal structure of ssp1007 from staphylococcus saprophyticus subsp. saprophyticus. northeast structural genomics target syr101a. 0.8659 111 212
ID Description Score Start End Superfamily
af_Q2FUS7_1_95_3.30.70.100 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits; 0.9463 3 96 3.30.70.100
4f67A01 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits; 0.9426 1 96 3.30.70.100
af_Q9VKU8_216_417_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9393 379 545 3.30.2350.10
af_Q12069_190_394_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9313 380 545 3.30.2350.10
af_Q2FUS7_1_95_3.30.70.100 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits; 0.9274 3 96 3.30.70.100
ID Description Score Start End GO Terms
AF-A0A4Q2XXW9-F1-model_v4 Pseudouridine synthase 0.9922 1 195
AF-A0A257W6B0-F1-model_v4 Pseudouridine synthase 0.9903 1 152
AF-A0A257W6B0-F1-model_v4 Pseudouridine synthase 0.9839 1 152
AF-A0A4Q2XXW9-F1-model_v4 Pseudouridine synthase 0.9822 1 195
AF-A0A1Z8Z2F5-F1-model_v4 Rhodanese domain-containing protein 0.9673 1 224

Feature Viewer

pLDDT pTM Quality
88.42 0.59 Medium
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Predicted Structure (AlphaFold2)

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