F174997
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 139 | 118 | 278 | 338 |
Family's Representative Sequence
| Representative Sequence | 3300003316|rootH1_10020004|rootH1_100200047 |
| Length | 350 |
| Sequence | MPDTLKTILAIRFSAMGDVAMTIPVMQQVLEQHPDIQIVFVSNKNWGALCAGIPRLIFFPADLKGAHKGFKGLYQLFKSIRQAHKIDAVADLHHVLRSQIVRTFFRLRGVPVAAIDKGRAEKKALARPEEKVLMPLTGTIERYATVFRQLGLSVIINPLRPVFGRQMLTEDMLAVTGPKEKDKWIGLAPFATYKEKTYPLEKMEDVLAALVRRSHTKVLLMGGGSSEVAQLTALAIKYPAAIIVAGQFRLPEEMAIISNLDVMISMDSANMHLASLFGVPVVSVWGATHPYAGFMGFGQSEANAVQLESLSCRPCSIFGNKPCFRGDHACMEWIPPAAITDKVLKVAGQQ |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300003316 | Sugarcane root Sample L1 | Metagenome | Unclassified |
| 2 | 3300001979 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 | Metagenome | Rhizosphere |
| 3 | 3300002738 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA | Metagenome | Unclassified |
| 4 | 3300002987 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB | Metagenome | Endosphere |
| 5 | 3300003215 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF | Metagenome | Endosphere |
| 6 | 3300003320 | Sugarcane root Sample H2 | Metagenome | Unclassified |
| 7 | 3300003322 | Sugarcane root Sample L2 | Metagenome | Unclassified |
| 8 | 3300003323 | Sugarcane root Sample H1 | Metagenome | Unclassified |
| 9 | 3300003354 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS | Metagenome | Endosphere |
| 10 | 3300003761 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 | Metagenome | Endosphere |
| 11 | 3300003762 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 | Metagenome | Endosphere |
| 12 | 3300003771 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 | Metagenome | Endosphere |
| 13 | 3300003790 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 | Metagenome | Endosphere |
| 14 | 3300003794 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 | Metagenome | Endosphere |
| 15 | 3300005262 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) | Metagenome | Endosphere |
| 16 | 3300005288 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) | Metagenome | Rhizosphere |
| 17 | 3300005289 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) | Metagenome | Rhizosphere |
| 18 | 3300005328 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG | Metagenome | Rhizosphere |
| 19 | 3300005331 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG | Metagenome | Rhizosphere |
| 20 | 3300005334 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 | Metagenome | Rhizosphere |
| 21 | 3300005340 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG | Metagenome | Rhizosphere |
| 22 | 3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Metagenome | Rhizosphere |
| 23 | 3300005353 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG | Metagenome | Rhizosphere |
| 24 | 3300005354 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG | Metagenome | Rhizosphere |
| 25 | 3300005356 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG | Metagenome | Rhizosphere |
| 26 | 3300005441 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG | Metagenome | Rhizosphere |
| 27 | 3300005455 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG | Metagenome | Rhizosphere |
| 28 | 3300005457 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG | Metagenome | Rhizosphere |
| 29 | 3300005459 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 | Metagenome | Rhizosphere |
| 30 | 3300005471 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG | Metagenome | Rhizosphere |
| 31 | 3300005543 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG | Metagenome | Rhizosphere |
| 32 | 3300005564 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG | Metagenome | Rhizosphere |
| 33 | 3300005578 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 | Metagenome | Rhizosphere |
| 34 | 3300005617 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 | Metagenome | Rhizosphere |
| 35 | 3300005718 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 | Metagenome | Rhizosphere |
| 36 | 3300005719 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 | Metagenome | Rhizosphere |
| 37 | 3300005840 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 | Metagenome | Rhizosphere |
| 38 | 3300006358 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 | Metagenome | Rhizosphere |
| 39 | 3300006931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 40 | 3300009148 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG | Metagenome | Rhizosphere |
| 41 | 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Metagenome | Rhizosphere |
| 42 | 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Metagenome | Rhizosphere |
| 43 | 3300013100 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG | Metagenome | Rhizosphere |
| 44 | 3300013297 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG | Metagenome | Rhizosphere |
| 45 | 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Metagenome | Rhizosphere |
| 46 | 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Metagenome | Rhizosphere |
| 47 | 3300014326 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG | Metagenome | Rhizosphere |
| 48 | 3300014745 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG | Metagenome | Rhizosphere |
| 49 | 3300014969 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG | Metagenome | Rhizosphere |
| 50 | 3300015265 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG | Metagenome | Rhizosphere |
| 51 | 3300025208 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) | Metagenome | Endosphere |
| 52 | 3300025242 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 53 | 3300025246 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) | Metagenome | Unclassified |
| 54 | 3300025250 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) | Metagenome | Unclassified |
| 55 | 3300025254 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 56 | 3300025273 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 57 | 3300025284 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) | Metagenome | Endosphere |
| 58 | 3300025295 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 59 | 3300025297 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) | Metagenome | Endosphere |
| 60 | 3300025298 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 61 | 3300025302 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) | Metagenome | Endosphere |
| 62 | 3300025304 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 63 | 3300025903 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 64 | 3300025907 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 65 | 3300025908 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 66 | 3300025923 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 67 | 3300025933 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 68 | 3300025936 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 69 | 3300025940 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 70 | 3300025942 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 71 | 3300025945 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 72 | 3300025960 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 73 | 3300025972 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 74 | 3300026067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 75 | 3300026089 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 76 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 77 | 3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 78 | 3300028381 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 79 | 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Metagenome | Rhizosphere |
| 80 | 3300032004 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 | Metagenome | Rhizosphere |
| 81 | 3300041413 | Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 | Metagenome | Rhizosphere |
| 82 | 3300041997 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 | Metagenome | Rhizosphere |
| 83 | 3300041999 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 | Metagenome | Rhizosphere |
| 84 | 3300042435 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 | Metagenome | Rhizosphere |
| 85 | 3300046558 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere | Metagenome | Rhizosphere |
| 86 | 3300046648 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere | Metagenome | Rhizosphere |
| 87 | 3300048924 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 | Metagenome | Unclassified |
| 88 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 89 | 3300049521 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E25_B_7_drought | Metagenome | Rhizosphere |
| 90 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 91 | 3300049663 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought | Metagenome | Rhizosphere |
| 92 | 3300049675 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_A_3_control | Metagenome | Rhizosphere |
| 93 | 3300049688 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_A_4_drought | Metagenome | Rhizosphere |
| 94 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 95 | 3300049851 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_B_0_drought | Metagenome | Rhizosphere |
| 96 | 3300053088 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere | Metagenome | Endosphere |
| 97 | 3300053096 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere | Metagenome | Endosphere |
| 98 | 3300053109 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere | Metagenome | Endosphere |
| 99 | 3300053121 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere | Metagenome | Endosphere |
| 100 | 3300053134 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere | Metagenome | Endosphere |
| 101 | 3300053139 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere | Metagenome | Endosphere |
| 102 | 3300053153 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere | Metagenome | Endosphere |
| 103 | 3300053156 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere | Metagenome | Endosphere |
| 104 | 3300055283 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere | Metagenome | Endosphere |
| 105 | 2818991442 | Chitinophaga pinensis 1204 | Isolate | Unclassified |
| 106 | 2818991460 | Chitinophaga polysaccharea 1209 | Isolate | Unclassified |
| 107 | 2821136567 | Chitinophaga sancti 1232 | Isolate | Unclassified |
| 108 | 2883068021 | Chitinophaga rhizosphaerae T16R-86 | Isolate | Rhizosphere |
| 109 | 2884791551 | Chitinophaga oryzae 1310 | Isolate | Unclassified |
| 110 | 2896085136 | Chitinophaga alhagiae T22 | Isolate | Unclassified |
| 111 | 2896109856 | Chitinophaga sp. SYP-B3965 | Isolate | Rhizosphere |
| 112 | 2904467357 | Chitinophaga sancti 3198 | Isolate | Unclassified |
| 113 | 2929177148 | Chitinophaga sp. R-72269 Hybrid assembly | Isolate | Unclassified |
| 114 | 2929239360 | Chitinophaga sp. R-73072 Hybrid assembly | Isolate | Unclassified |
| 115 | 2929921140 | Chitinophaga sp. R-72609 Hybrid assembly | Isolate | Unclassified |
| 116 | 2945977869 | Chitinophaga sp. W2I13 | Isolate | Rhizosphere |
| 117 | 2946013367 | Chitinophaga sp. W3I9 | Isolate | Rhizosphere |
| 118 | 8003151029 | Chitinophaga sp. GbtcB8 | Isolate | Unclassified |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 89.93 |
| Metatranscriptomes | 0 |
| Isolates | 10.07 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 25.9 |
| Nodule | 0 |
| Rhizoplane | 0 |
| Rhizosphere | 58.27 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 2.88 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | rootH1_10020004 | 3300003316 | Bacteria | 9874 |
| 2 | JGI24740J21852_10004962 | 3300001979 | Bacteria | 5658 |
| 3 | JGI25154J39366_1000001 | 3300002738 | Bacteria | 483450 |
| 4 | JGI25159J45721_1019427 | 3300002987 | Bacteria | 1337 |
| 5 | JGI25153J46596_10011612 | 3300003215 | Bacteria | 3876 |
| 6 | rootH2_10004707 | 3300003320 | Bacteria | 19403 |
| 7 | rootH2_10058614 | 3300003320 | Bacteria | 4809 |
| 8 | rootL2_10169259 | 3300003322 | Bacteria | 1881 |
| 9 | rootL2_10209217 | 3300003322 | Bacteria | 3696 |
| 10 | rootH1_10006952 | 3300003323 | Bacteria | 18299 |
| 11 | rootH1_10008724 | 3300003323 | Bacteria | 8118 |
| 12 | JGI25160J50197_1004817 | 3300003354 | Bacteria | 5755 |
| 13 | JGI25160J50197_1014307 | 3300003354 | Bacteria | 2660 |
| 14 | Ga0055535_1002354 | 3300003761 | Bacteria | 6820 |
| 15 | Ga0055542_1002590 | 3300003762 | Bacteria | 5725 |
| 16 | Ga0055526_1024185 | 3300003771 | Bacteria | 1998 |
| 17 | Ga0055528_1000359 | 3300003790 | Bacteria | 37077 |
| 18 | Ga0055531_10000045 | 3300003794 | Bacteria | 132131 |
| 19 | Ga0065165_1000112 | 3300005262 | Bacteria | 135988 |
| 20 | Ga0065165_1008627 | 3300005262 | Bacteria | 4729 |
| 21 | Ga0065165_1018922 | 3300005262 | Bacteria | 2476 |
| 22 | Ga0065714_10080909 | 3300005288 | Bacteria | 2409 |
| 23 | Ga0065704_10101299 | 3300005289 | Bacteria | 2241 |
| 24 | Ga0070676_10058474 | 3300005328 | Bacteria | 2285 |
| 25 | Ga0070670_100009422 | 3300005331 | Bacteria | 8337 |
| 26 | Ga0068869_100019734 | 3300005334 | Bacteria | 4612 |
| 27 | Ga0070689_100015793 | 3300005340 | Bacteria | 5515 |
| 28 | Ga0070668_100021739 | 3300005347 | Bacteria | 4847 |
| 29 | Ga0070668_100058631 | 3300005347 | Bacteria | 2979 |
| 30 | Ga0070669_100004598 | 3300005353 | Bacteria | 9963 |
| 31 | Ga0070669_100025703 | 3300005353 | Bacteria | 4230 |
| 32 | Ga0070675_100050448 | 3300005354 | Bacteria | 3416 |
| 33 | Ga0070674_100074880 | 3300005356 | Bacteria | 2403 |
| 34 | Ga0070700_100027733 | 3300005441 | Bacteria | 3361 |
| 35 | Ga0070663_100037297 | 3300005455 | Bacteria | 3383 |
| 36 | Ga0070662_100208566 | 3300005457 | Bacteria | 1554 |
| 37 | Ga0068867_100010794 | 3300005459 | Bacteria | 6444 |
| 38 | Ga0070698_100176752 | 3300005471 | Bacteria | 2074 |
| 39 | Ga0070672_100060445 | 3300005543 | Bacteria | 2983 |
| 40 | Ga0070672_100381072 | 3300005543 | Bacteria | 1206 |
| 41 | Ga0070664_100232607 | 3300005564 | Bacteria | 1652 |
| 42 | Ga0068854_100398119 | 3300005578 | Bacteria | 1139 |
| 43 | Ga0068859_100312874 | 3300005617 | Bacteria | 1664 |
| 44 | Ga0068866_10021457 | 3300005718 | Bacteria | 2975 |
| 45 | Ga0068861_100092990 | 3300005719 | Bacteria | 2383 |
| 46 | Ga0068870_10037178 | 3300005840 | Bacteria | 2508 |
| 47 | Ga0068871_100088867 | 3300006358 | Bacteria | 2572 |
| 48 | Ga0097620_100312862 | 3300006931 | Bacteria | 1664 |
| 49 | Ga0105243_10334709 | 3300009148 | Bacteria | 1384 |
| 50 | Ga0105242_10081977 | 3300009176 | Bacteria | 2699 |
| 51 | Ga0105249_10021899 | 3300009553 | Bacteria | 5723 |
| 52 | Ga0105249_10426428 | 3300009553 | Bacteria | 1361 |
| 53 | Ga0157373_10218842 | 3300013100 | Bacteria | 1343 |
| 54 | Ga0157378_10047195 | 3300013297 | Bacteria | 3828 |
| 55 | Ga0157378_10242277 | 3300013297 | Bacteria | 1723 |
| 56 | Ga0163162_10160263 | 3300013306 | Unclassified | 2371 |
| 57 | Ga0163162_10174648 | 3300013306 | Bacteria | 2274 |
| 58 | Ga0157375_10013642 | 3300013308 | Bacteria | 7242 |
| 59 | Ga0157375_10163306 | 3300013308 | Bacteria | 2371 |
| 60 | Ga0157375_10193138 | 3300013308 | Bacteria | 2191 |
| 61 | Ga0157380_10001574 | 3300014326 | Bacteria | 15001 |
| 62 | Ga0157377_10001511 | 3300014745 | Bacteria | 10084 |
| 63 | Ga0157376_10228466 | 3300014969 | Bacteria | 1727 |
| 64 | Ga0182005_1000076 | 3300015265 | Bacteria | 79167 |
| 65 | Ga0209436_102554 | 3300025208 | Bacteria | 5381 |
| 66 | Ga0209258_100041 | 3300025242 | Bacteria | 381381 |
| 67 | Ga0209646_1000002 | 3300025246 | Bacteria | 1425781 |
| 68 | Ga0209026_1000218 | 3300025250 | Bacteria | 79205 |
| 69 | Ga0209148_1000375 | 3300025254 | Bacteria | 54278 |
| 70 | Ga0209673_1000096 | 3300025273 | Bacteria | 194819 |
| 71 | Ga0209130_1001124 | 3300025284 | Bacteria | 19660 |
| 72 | Ga0209564_1001415 | 3300025295 | Bacteria | 24742 |
| 73 | Ga0209758_1001132 | 3300025297 | Bacteria | 34267 |
| 74 | Ga0209758_1003569 | 3300025297 | Bacteria | 13961 |
| 75 | Ga0209758_1024723 | 3300025297 | Bacteria | 2665 |
| 76 | Ga0209050_1000207 | 3300025298 | Bacteria | 131328 |
| 77 | Ga0207426_1000275 | 3300025302 | Bacteria | 106256 |
| 78 | Ga0207426_1000699 | 3300025302 | Bacteria | 39800 |
| 79 | Ga0207426_1001471 | 3300025302 | Bacteria | 19401 |
| 80 | Ga0209257_1000001 | 3300025304 | Bacteria | 2274655 |
| 81 | Ga0209257_1001870 | 3300025304 | Bacteria | 22825 |
| 82 | Ga0207680_10132284 | 3300025903 | Bacteria | 1645 |
| 83 | Ga0207645_10042561 | 3300025907 | Bacteria | 2906 |
| 84 | Ga0207643_10043148 | 3300025908 | Bacteria | 2544 |
| 85 | Ga0207681_10027393 | 3300025923 | Bacteria | 3684 |
| 86 | Ga0207681_10089903 | 3300025923 | Bacteria | 2190 |
| 87 | Ga0207706_10036843 | 3300025933 | Bacteria | 4345 |
| 88 | Ga0207670_10023953 | 3300025936 | Bacteria | 3808 |
| 89 | Ga0207691_10028065 | 3300025940 | Bacteria | 5272 |
| 90 | Ga0207691_10118307 | 3300025940 | Bacteria | 2350 |
| 91 | Ga0207689_10135168 | 3300025942 | Bacteria | 2030 |
| 92 | Ga0207679_10048352 | 3300025945 | Bacteria | 3096 |
| 93 | Ga0207651_10022312 | 3300025960 | Bacteria | 3868 |
| 94 | Ga0207668_10045936 | 3300025972 | Bacteria | 2981 |
| 95 | Ga0207678_10040210 | 3300026067 | Bacteria | 4057 |
| 96 | Ga0207648_10007442 | 3300026089 | Bacteria | 10767 |
| 97 | Ga0207674_10040096 | 3300026116 | Bacteria | 4853 |
| 98 | Ga0207675_100001768 | 3300026118 | Bacteria | 21608 |
| 99 | Ga0268264_10158013 | 3300028381 | Bacteria | 2039 |
| 100 | Ga0307416_100511161 | 3300032002 | Unclassified | 1268 |
| 101 | Ga0307414_10124472 | 3300032004 | Bacteria | 1989 |
| 102 | Ga0439465_0007660 | 3300041413 | Bacteria | 3427 |
| 103 | Ga0439431_0015242 | 3300041997 | Bacteria | 1788 |
| 104 | Ga0439433_0043610 | 3300041999 | Unclassified | 1048 |
| 105 | Ga0439434_0001225 | 3300042435 | Bacteria | 7392 |
| 106 | Ga0495633_0000336 | 3300046558 | Bacteria | 52701 |
| 107 | Ga0495611_0020407 | 3300046648 | Bacteria | 2852 |
| 108 | Ga0496121_0000030 | 3300048924 | Bacteria | 412079 |
| 109 | Ga0496126_0048703 | 3300048929 | Bacteria | 3871 |
| 110 | Ga0501298_009580 | 3300049521 | Bacteria | 1651 |
| 111 | Ga0501047_0187000 | 3300049581 | Bacteria | 1936 |
| 112 | Ga0501223_001143 | 3300049663 | Bacteria | 6252 |
| 113 | Ga0501243_000554 | 3300049675 | Bacteria | 5023 |
| 114 | Ga0501259_000168 | 3300049688 | Bacteria | 9927 |
| 115 | Ga0501044_0104207 | 3300049823 | Bacteria | 2851 |
| 116 | Ga0501212_016569 | 3300049851 | Unclassified | 1108 |
| 117 | Ga0500644_0000160 | 3300053088 | Bacteria | 42538 |
| 118 | Ga0500641_0054650 | 3300053096 | Bacteria | 1651 |
| 119 | Ga0500569_000279 | 3300053109 | Bacteria | 8070 |
| 120 | Ga0500607_053622 | 3300053121 | Bacteria | 2137 |
| 121 | Ga0500658_0004336 | 3300053134 | Bacteria | 5318 |
| 122 | Ga0500568_0000606 | 3300053139 | Bacteria | 25992 |
| 123 | Ga0500616_0018948 | 3300053153 | Bacteria | 3887 |
| 124 | Ga0500622_0000220 | 3300053156 | Bacteria | 60029 |
| 125 | Ga0500661_005441 | 3300055283 | Bacteria | 2380 |
| 126 | 2819573435 | 2818991442 | Bacteria | 8318214 |
| 127 | 2819680942 | 2818991460 | Bacteria | 7595395 |
| 128 | 2821136856 | 2821136567 | Bacteria | 8080116 |
| 129 | 2883072549 | 2883068021 | Bacteria | 6192739 |
| 130 | 2884795722 | 2884791551 | Bacteria | 8511252 |
| 131 | 2896087680 | 2896085136 | Bacteria | 6129793 |
| 132 | 2896112592 | 2896109856 | Bacteria | 7140722 |
| 133 | 2904468400 | 2904467357 | Bacteria | 8057758 |
| 134 | 2929178716 | 2929177148 | Bacteria | 7883697 |
| 135 | 2929241074 | 2929239360 | Bacteria | 7745570 |
| 136 | 2929923103 | 2929921140 | Bacteria | 8649150 |
| 137 | 2945981128 | 2945977869 | Bacteria | 7777518 |
| 138 | 2946019472 | 2946013367 | Bacteria | 7766675 |
| 139 | 8003156917 | 8003151029 | Bacteria | 8187759 |
| 140 | rootH1_10020004 | |||
| 141 | JGI24740J21852_10004962 | |||
| 142 | JGI25154J39366_1000001 | |||
| 143 | JGI25159J45721_1019427 | |||
| 144 | JGI25153J46596_10011612 | |||
| 145 | rootH2_10004707 | |||
| 146 | rootH2_10058614 | |||
| 147 | rootL2_10169259 | |||
| 148 | rootL2_10209217 | |||
| 149 | rootH1_10006952 | |||
| 150 | rootH1_10008724 | |||
| 151 | JGI25160J50197_1004817 | |||
| 152 | JGI25160J50197_1014307 | |||
| 153 | Ga0055535_1002354 | |||
| 154 | Ga0055542_1002590 | |||
| 155 | Ga0055526_1024185 | |||
| 156 | Ga0055528_1000359 | |||
| 157 | Ga0055531_10000045 | |||
| 158 | Ga0065165_1000112 | |||
| 159 | Ga0065165_1008627 | |||
| 160 | Ga0065165_1018922 | |||
| 161 | Ga0065714_10080909 | |||
| 162 | Ga0065704_10101299 | |||
| 163 | Ga0070676_10058474 | |||
| 164 | Ga0070670_100009422 | |||
| 165 | Ga0068869_100019734 | |||
| 166 | Ga0070689_100015793 | |||
| 167 | Ga0070668_100021739 | |||
| 168 | Ga0070668_100058631 | |||
| 169 | Ga0070669_100004598 | |||
| 170 | Ga0070669_100025703 | |||
| 171 | Ga0070675_100050448 | |||
| 172 | Ga0070674_100074880 | |||
| 173 | Ga0070700_100027733 | |||
| 174 | Ga0070663_100037297 | |||
| 175 | Ga0070662_100208566 | |||
| 176 | Ga0068867_100010794 | |||
| 177 | Ga0070698_100176752 | |||
| 178 | Ga0070672_100060445 | |||
| 179 | Ga0070672_100381072 | |||
| 180 | Ga0070664_100232607 | |||
| 181 | Ga0068854_100398119 | |||
| 182 | Ga0068859_100312874 | |||
| 183 | Ga0068866_10021457 | |||
| 184 | Ga0068861_100092990 | |||
| 185 | Ga0068870_10037178 | |||
| 186 | Ga0068871_100088867 | |||
| 187 | Ga0097620_100312862 | |||
| 188 | Ga0105243_10334709 | |||
| 189 | Ga0105242_10081977 | |||
| 190 | Ga0105249_10021899 | |||
| 191 | Ga0105249_10426428 | |||
| 192 | Ga0157373_10218842 | |||
| 193 | Ga0157378_10047195 | |||
| 194 | Ga0157378_10242277 | |||
| 195 | Ga0163162_10160263 | |||
| 196 | Ga0163162_10174648 | |||
| 197 | Ga0157375_10013642 | |||
| 198 | Ga0157375_10163306 | |||
| 199 | Ga0157375_10193138 | |||
| 200 | Ga0157380_10001574 | |||
| 201 | Ga0157377_10001511 | |||
| 202 | Ga0157376_10228466 | |||
| 203 | Ga0182005_1000076 | |||
| 204 | Ga0209436_102554 | |||
| 205 | Ga0209258_100041 | |||
| 206 | Ga0209646_1000002 | |||
| 207 | Ga0209026_1000218 | |||
| 208 | Ga0209148_1000375 | |||
| 209 | Ga0209673_1000096 | |||
| 210 | Ga0209130_1001124 | |||
| 211 | Ga0209564_1001415 | |||
| 212 | Ga0209758_1001132 | |||
| 213 | Ga0209758_1003569 | |||
| 214 | Ga0209758_1024723 | |||
| 215 | Ga0209050_1000207 | |||
| 216 | Ga0207426_1000275 | |||
| 217 | Ga0207426_1000699 | |||
| 218 | Ga0207426_1001471 | |||
| 219 | Ga0209257_1000001 | |||
| 220 | Ga0209257_1001870 | |||
| 221 | Ga0207680_10132284 | |||
| 222 | Ga0207645_10042561 | |||
| 223 | Ga0207643_10043148 | |||
| 224 | Ga0207681_10027393 | |||
| 225 | Ga0207681_10089903 | |||
| 226 | Ga0207706_10036843 | |||
| 227 | Ga0207670_10023953 | |||
| 228 | Ga0207691_10028065 | |||
| 229 | Ga0207691_10118307 | |||
| 230 | Ga0207689_10135168 | |||
| 231 | Ga0207679_10048352 | |||
| 232 | Ga0207651_10022312 | |||
| 233 | Ga0207668_10045936 | |||
| 234 | Ga0207678_10040210 | |||
| 235 | Ga0207648_10007442 | |||
| 236 | Ga0207674_10040096 | |||
| 237 | Ga0207675_100001768 | |||
| 238 | Ga0268264_10158013 | |||
| 239 | Ga0307416_100511161 | |||
| 240 | Ga0307414_10124472 | |||
| 241 | Ga0439465_0007660 | |||
| 242 | Ga0439431_0015242 | |||
| 243 | Ga0439433_0043610 | |||
| 244 | Ga0439434_0001225 | |||
| 245 | Ga0495633_0000336 | |||
| 246 | Ga0495611_0020407 | |||
| 247 | Ga0496121_0000030 | |||
| 248 | Ga0496126_0048703 | |||
| 249 | Ga0501298_009580 | |||
| 250 | Ga0501047_0187000 | |||
| 251 | Ga0501223_001143 | |||
| 252 | Ga0501243_000554 | |||
| 253 | Ga0501259_000168 | |||
| 254 | Ga0501044_0104207 | |||
| 255 | Ga0501212_016569 | |||
| 256 | Ga0500644_0000160 | |||
| 257 | Ga0500641_0054650 | |||
| 258 | Ga0500569_000279 | |||
| 259 | Ga0500607_053622 | |||
| 260 | Ga0500658_0004336 | |||
| 261 | Ga0500568_0000606 | |||
| 262 | Ga0500616_0018948 | |||
| 263 | Ga0500622_0000220 | |||
| 264 | Ga0500661_005441 | |||
| 265 | 2819573435 | |||
| 266 | 2819680942 | |||
| 267 | 2821136856 | |||
| 268 | 2883072549 | |||
| 269 | 2884795722 | |||
| 270 | 2896087680 | |||
| 271 | 2896112592 | |||
| 272 | 2904468400 | |||
| 273 | 2929178716 | |||
| 274 | 2929241074 | |||
| 275 | 2929923103 | |||
| 276 | 2945981128 | |||
| 277 | 2946019472 | |||
| 278 | 8003156917 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 3tov-assembly2.cif.gz_B | the crystal structure of the glycosyl transferase family 9 from veillonella parvula dsm 2008 | 0.7498 | 2 | 342 |
| 2h1f-assembly2.cif.gz_B | e. coli heptosyltransferase waac with adp | 0.7455 | 3 | 339 |
| 6dfe-assembly1.cif.gz_A | the structure of a ternary complex of e. coli waac | 0.7425 | 3 | 343 |
| 6dfe-assembly1.cif.gz_A | the structure of a ternary complex of e. coli waac | 0.7404 | 3 | 343 |
| 3tov-assembly2.cif.gz_B | the crystal structure of the glycosyl transferase family 9 from veillonella parvula dsm 2008 | 0.7339 | 2 | 342 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 4ovjA01 | Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II | 0.8665 | 4 | 40 | 3.40.190.10 |
| 2h1fB02 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; | 0.8368 | 179 | 339 | 3.40.50.2000 |
| 3tovB02 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; | 0.7954 | 168 | 342 | 3.40.50.2000 |
| 1pswA02 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; | 0.7704 | 176 | 342 | 3.40.50.2000 |
| af_A0A0N7KD23_75_238_3.40.50.2000 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; | 0.7674 | 5 | 111 | 3.40.50.2000 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A839IZC1-F1-model_v4 | ADP-heptose--LPS heptosyltransferase RfaF | 0.9613 | 2 | 96 |
GO:0005829
GO:0008713 GO:0009244 |
| AF-M6RDB6-F1-model_v4 | Heptosyltransferase domain protein | 0.9589 | 9 | 157 |
GO:0005829
GO:0008713 GO:0009244 |
| AF-A0A520HN27-F1-model_v4 | Ribonucleotide reductase large subunit C-terminal domain-containing protein | 0.9566 | 3 | 155 |
GO:0004748
GO:0005524 GO:0005971 GO:0009263 |
| AF-A0A3D6BMC1-F1-model_v4 | ADP-heptose--LPS heptosyltransferase RfaF | 0.956 | 14 | 268 |
GO:0005829
GO:0008713 GO:0009244 |
| AF-A0A641W5T1-F1-model_v4 | deleted | 0.9539 | 3 | 115 |
|