F175161

General Info

Members Datasets Scaffolds Average Seq Length
139 94 139 580

Family's Representative Sequence

Representative Sequence 3300005327|Ga0070658_10009463|Ga0070658_100094633
Length 641
Sequence VKSAASRAWVLRAYQAPGAETPFAAGVLPRRRGVDRAGTPGGSTVELRPISRADETWEPVRANMARNMTSAVCATTTKTRPTRGVTPLLAAATGALPCDARAQTAATVTVSVDATAAGAPLERVWAYHGYDELNYTTSPEGEALLATLAAAHTAPVHVRSHFLFNTGDGTPALKWGSTNVYTEDAQGNPVYSWPLTDGILDALTGAGAYPLVELGFMPEALSTHPAPYRNSSTTALDGGCFYPPTDYATWAGLVGAWATHADARYPDVSARWLWELWNEPDIGYWNGTAADYQKLYDYTESALHAVLPDATLGGPATASPGGTFLTQFLKHCATGTNAVTGQVGTRLDLVSFHAKGGVAVADDGHVQMDLGNQLRIHRLGFTTVAAFPQFQRTPIYITEADPDGCAACSASDVPADAYRNSTAYGAYELAMMKQTLELEAQVGVALGGVLTWAFTFPGTPYFAGYRALATNGIHLPVLGAFQLLGRLDGERLPLSSSGARPADDIIASGVRGQELIDGIATSNGGALQVLVWSYHDDLVDAAPTPVHLAVRLPSSFGGAARVSHLRVDESHGDAYTVWVSQGMPSSPSTAQLAALRQAMEPAPLGPDQTLPVGTDGALAVDFALPRFGISLLTVQPGTPTD

Samples

Sample ID Description Type Environment
1 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
7 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
8 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
9 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
10 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
11 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
12 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
13 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
14 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
15 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
16 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
17 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
18 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
19 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
20 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
21 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
22 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
23 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
24 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
25 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
26 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
27 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
28 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
29 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
30 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
31 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
32 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
33 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
34 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
35 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
56 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
58 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
59 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
60 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
61 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
62 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
63 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
64 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
65 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
66 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
67 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
68 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
69 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
70 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
71 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
72 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
73 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
74 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
75 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
76 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
77 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
78 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
79 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
80 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
81 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
82 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
83 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
84 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
85 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
86 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
87 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
88 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
89 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
90 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
91 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
92 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
93 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
94 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.72
Nodule 0
Rhizoplane 6.47
Rhizosphere 89.93
Stem 0
Stem Tuber 0
Unclassified 2.88

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10108429 3300003323 Bacteria 4123
2 rootH1_10133369 3300003323 Bacteria 2878
3 Ga0070658_10009463 3300005327 Bacteria 7834
4 Ga0070683_100000564 3300005329 Bacteria 26365
5 Ga0070690_100010473 3300005330 Bacteria 5398
6 Ga0070680_100003890 3300005336 Bacteria 11165
7 Ga0070682_100002770 3300005337 Bacteria 9705
8 Ga0070689_100000001 3300005340 Bacteria 1334580
9 Ga0070689_100018475 3300005340 Bacteria 5137
10 Ga0070687_100000730 3300005343 Bacteria 10917
11 Ga0070668_100077614 3300005347 Bacteria 2596
12 Ga0070669_100005399 3300005353 Bacteria 9220
13 Ga0070675_100034610 3300005354 Bacteria 4101
14 Ga0070675_100084174 3300005354 Unclassified 2656
15 Ga0070673_100001074 3300005364 Bacteria 15622
16 Ga0070688_100011656 3300005365 Bacteria 4893
17 Ga0070688_100067265 3300005365 Bacteria 2282
18 Ga0070710_10043490 3300005437 Unclassified 2488
19 Ga0070700_100019891 3300005441 Bacteria 3880
20 Ga0068867_100032032 3300005459 Bacteria 3799
21 Ga0068867_100049773 3300005459 Bacteria 3085
22 Ga0068867_100059639 3300005459 Bacteria 2828
23 Ga0070679_100002147 3300005530 Bacteria 17778
24 Ga0070679_100002849 3300005530 Bacteria 15707
25 Ga0070684_100019401 3300005535 Bacteria 5624
26 Ga0070684_100103910 3300005535 Bacteria 2542
27 Ga0068853_100012597 3300005539 Bacteria 6881
28 Ga0070686_100002089 3300005544 Bacteria 11023
29 Ga0070686_100002323 3300005544 Bacteria 10499
30 Ga0070686_100005400 3300005544 Bacteria 7075
31 Ga0068855_100000088 3300005563 Bacteria 111357
32 Ga0068855_100005850 3300005563 Bacteria 15011
33 Ga0068855_100011130 3300005563 Bacteria 10860
34 Ga0068856_100010351 3300005614 Bacteria 9058
35 Ga0068856_100013977 3300005614 Bacteria 7762
36 Ga0068856_100041333 3300005614 Unclassified 4531
37 Ga0068856_100148240 3300005614 Unclassified 2354
38 Ga0068852_100138019 3300005616 Unclassified 2253
39 Ga0068866_10008465 3300005718 Bacteria 4337
40 Ga0068858_100100971 3300005842 Bacteria 2691
41 Ga0068860_100065354 3300005843 Bacteria 3455
42 Ga0068865_100002019 3300006881 Bacteria 11972
43 Ga0105240_10000794 3300009093 Bacteria 57248
44 Ga0111539_10005126 3300009094 Bacteria 16991
45 Ga0105237_10000069 3300009545 Bacteria 138459
46 Ga0105238_10001960 3300009551 Bacteria 20722
47 Ga0105238_10009130 3300009551 Bacteria 9924
48 Ga0105239_10215114 3300010375 Bacteria 2155
49 Ga0163163_10097248 3300014325 Bacteria 2964
50 Ga0213875_10000066 3300021388 Bacteria 127864
51 Ga0207692_10024765 3300025898 Unclassified 2795
52 Ga0207642_10007786 3300025899 Bacteria 3634
53 Ga0207705_10011782 3300025909 Bacteria 6320
54 Ga0207671_10000154 3300025914 Bacteria 106945
55 Ga0207662_10018995 3300025918 Bacteria 3905
56 Ga0207652_10001023 3300025921 Bacteria 25675
57 Ga0207652_10010003 3300025921 Bacteria 7638
58 Ga0207681_10000345 3300025923 Bacteria 33255
59 Ga0207694_10004870 3300025924 Bacteria 10424
60 Ga0207694_10008325 3300025924 Bacteria 7841
61 Ga0207650_10026323 3300025925 Unclassified 4148
62 Ga0207670_10000002 3300025936 Bacteria 783058
63 Ga0207670_10002798 3300025936 Bacteria 9193
64 Ga0207670_10003720 3300025936 Bacteria 8096
65 Ga0207669_10009618 3300025937 Bacteria 4618
66 Ga0207691_10015043 3300025940 Bacteria 7365
67 Ga0207691_10099669 3300025940 Bacteria 2594
68 Ga0207661_10005858 3300025944 Bacteria 8673
69 Ga0207667_10001206 3300025949 Bacteria 32308
70 Ga0207667_10006742 3300025949 Bacteria 13861
71 Ga0207651_10008737 3300025960 Bacteria 5493
72 Ga0207651_10021940 3300025960 Unclassified 3892
73 Ga0207658_10105355 3300025986 Bacteria 2218
74 Ga0207678_10037780 3300026067 Bacteria 4199
75 Ga0207648_10018648 3300026089 Bacteria 6279
76 Ga0207648_10027282 3300026089 Bacteria 5072
77 Ga0207648_10118761 3300026089 Bacteria 2324
78 Ga0207675_100058764 3300026118 Bacteria 3588
79 Ga0207683_10013754 3300026121 Bacteria 6899
80 Ga0207428_10021180 3300027907 Bacteria 5506
81 Ga0268264_10094115 3300028381 Bacteria 2590
82 Ga0265318_10015050 3300028577 Bacteria 3230
83 Ga0265338_10004842 3300028800 Bacteria 17963
84 Ga0265330_10000302 3300031235 Bacteria 35722
85 Ga0265330_10003493 3300031235 Bacteria 8195
86 Ga0265332_10016795 3300031238 Bacteria 3229
87 Ga0265328_10000036 3300031239 Bacteria 96092
88 Ga0265328_10000356 3300031239 Bacteria 21522
89 Ga0265320_10000829 3300031240 Bacteria 23321
90 Ga0265320_10001029 3300031240 Bacteria 20781
91 Ga0265329_10011619 3300031242 Bacteria 3195
92 Ga0265340_10000336 3300031247 Bacteria 24931
93 Ga0265340_10006348 3300031247 Bacteria 6516
94 Ga0265340_10028168 3300031247 Bacteria 2828
95 Ga0265339_10001024 3300031249 Bacteria 21311
96 Ga0265339_10007083 3300031249 Bacteria 7281
97 Ga0265339_10011628 3300031249 Bacteria 5409
98 Ga0265339_10035582 3300031249 Bacteria 2792
99 Ga0265331_10011777 3300031250 Bacteria 4772
100 Ga0265316_10005401 3300031344 Bacteria 12419
101 Ga0265316_10036051 3300031344 Bacteria 4001
102 Ga0265313_10031691 3300031595 Bacteria 2707
103 Ga0265314_10000017 3300031711 Bacteria 340498
104 Ga0265314_10000023 3300031711 Bacteria 295290
105 Ga0265314_10002387 3300031711 Bacteria 19327
106 Ga0265314_10012196 3300031711 Bacteria 7037
107 Ga0265314_10018260 3300031711 Bacteria 5474
108 Ga0265342_10000371 3300031712 Bacteria 49429
109 Ga0265342_10001185 3300031712 Bacteria 24749
110 Ga0265342_10008191 3300031712 Bacteria 7536
111 Ga0373934_0028353 3300035086 Bacteria 2181
112 Ga0373954_0006624 3300035118 Bacteria 5054
113 Ga0373954_0028612 3300035118 Bacteria 2563
114 Ga0373955_0005147 3300035172 Bacteria 5849
115 Ga0373937_0018218 3300036401 Bacteria 6266
116 Ga0373937_0030799 3300036401 Bacteria 4860
117 Ga0373925_0053318 3300037068 Bacteria 3023
118 Ga0436364_0079644 3300037853 Bacteria 315114
119 Ga0451791_0379937 3300041451 Bacteria 2189
120 Ga0451807_0689548 3300041486 Bacteria 5037
121 Ga0451807_1284663 3300041486 Bacteria 10638
122 Ga0453684_0068841 3300044712 Bacteria 4492
123 Ga0495630_0026849 3300046517 Bacteria 4266
124 Ga0495652_0106515 3300046529 Bacteria 2264
125 Ga0495586_0023859 3300046535 Bacteria 3266
126 Ga0495634_0003190 3300046642 Bacteria 13270
127 Ga0495684_0011757 3300047471 Bacteria 6758
128 Ga0496100_0040453 3300048903 Bacteria 2966
129 Ga0496104_0078594 3300048907 Bacteria 3144
130 Ga0496108_0127159 3300048911 Bacteria 2189
131 Ga0496114_0000151 3300048917 Bacteria 50468
132 Ga0496114_0030788 3300048917 Bacteria 4415
133 Ga0496114_0086679 3300048917 Bacteria 2654
134 Ga0501067_0006936 3300049583 Bacteria 6286
135 Ga0501077_0033305 3300049593 Bacteria 3279
136 nmdc:mga08y16_9881_c1 3300050511 Bacteria 10018
137 Ga0495601_0097106 3300053077 Bacteria 1900
138 Ga0500555_004879 3300053103 Bacteria 3806
139 Ga0501084_0049525 3300054114 Bacteria 3517

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048907 Ga0496104_0078594 Ga0496104_0078594_468_2300 495
2 3300036401 Ga0373937_0030799 Ga0373937_0030799_3247_4839 512
3 3300031247 Ga0265340_10028168 Ga0265340_100281682 513
4 3300005614 Ga0068856_100041333 Ga0068856_1000413331 526
5 3300005365 Ga0070688_100067265 Ga0070688_1000672651 527
6 3300005616 Ga0068852_100138019 Ga0068852_1001380192 527
7 3300031595 Ga0265313_10031691 Ga0265313_100316912 527
8 3300005330 Ga0070690_100010473 Ga0070690_1000104732 528
9 3300005343 Ga0070687_100000730 Ga0070687_1000007305 528
10 3300005530 Ga0070679_100002849 Ga0070679_1000028492 528
11 3300005544 Ga0070686_100002323 Ga0070686_1000023233 528
12 3300025918 Ga0207662_10018995 Ga0207662_100189952 528
13 3300031235 Ga0265330_10000302 Ga0265330_1000030223 528
14 3300031238 Ga0265332_10016795 Ga0265332_100167952 528
15 3300031242 Ga0265329_10011619 Ga0265329_100116192 528
16 3300031250 Ga0265331_10011777 Ga0265331_100117774 528
17 3300031344 Ga0265316_10036051 Ga0265316_100360512 528
18 3300031711 Ga0265314_10000017 Ga0265314_10000017200 528
19 3300048911 Ga0496108_0127159 Ga0496108_0127159_554_2146 528
20 3300035086 Ga0373934_0028353 Ga0373934_0028353_71_1771 532
21 3300035118 Ga0373954_0006624 Ga0373954_0006624_1047_2747 532
22 3300035172 Ga0373955_0005147 Ga0373955_0005147_3549_5249 532
23 3300037068 Ga0373925_0053318 Ga0373925_0053318_28_1773 532
24 3300048917 Ga0496114_0086679 Ga0496114_0086679_48_1961 532
25 3300041451 Ga0451791_0379937 Ga0451791_0379937_198_1844 533
26 3300053103 Ga0500555_004879 Ga0500555_004879_1131_2933 534
27 3300054114 Ga0501084_0049525 Ga0501084_0049525_480_2414 537
28 3300041486 Ga0451807_0689548 Ga0451807_0689548_1262_3091 539
29 3300005354 Ga0070675_100084174 Ga0070675_1000841741 540
30 3300014325 Ga0163163_10097248 Ga0163163_100972482 541
31 3300026067 Ga0207678_10037780 Ga0207678_100377802 541
32 3300049583 Ga0501067_0006936 Ga0501067_0006936_3315_5135 541
33 3300028577 Ga0265318_10015050 Ga0265318_100150502 542
34 3300005329 Ga0070683_100000564 Ga0070683_10000056417 543
35 3300005336 Ga0070680_100003890 Ga0070680_1000038903 543
36 3300005535 Ga0070684_100019401 Ga0070684_1000194014 543
37 3300025944 Ga0207661_10005858 Ga0207661_100058584 543
38 3300005563 Ga0068855_100011130 Ga0068855_1000111305 544
39 3300025921 Ga0207652_10001023 Ga0207652_1000102315 544
40 3300025949 Ga0207667_10006742 Ga0207667_100067424 544
41 3300031247 Ga0265340_10000336 Ga0265340_1000033617 544
42 3300031249 Ga0265339_10007083 Ga0265339_100070835 544
43 3300031344 Ga0265316_10005401 Ga0265316_100054015 544
44 3300031711 Ga0265314_10000023 Ga0265314_1000002351 544
45 3300031712 Ga0265342_10001185 Ga0265342_1000118514 544
46 3300005347 Ga0070668_100077614 Ga0070668_1000776142 545
47 3300005353 Ga0070669_100005399 Ga0070669_1000053993 545
48 3300005437 Ga0070710_10043490 Ga0070710_100434902 545
49 3300005441 Ga0070700_100019891 Ga0070700_1000198911 545
50 3300005459 Ga0068867_100059639 Ga0068867_1000596392 545
51 3300005544 Ga0070686_100002089 Ga0070686_10000208910 545
52 3300005614 Ga0068856_100148240 Ga0068856_1001482401 545
53 3300005718 Ga0068866_10008465 Ga0068866_100084653 545
54 3300005842 Ga0068858_100100971 Ga0068858_1001009712 545
55 3300005843 Ga0068860_100065354 Ga0068860_1000653543 545
56 3300006881 Ga0068865_100002019 Ga0068865_1000020192 545
57 3300009551 Ga0105238_10001960 Ga0105238_100019609 545
58 3300025898 Ga0207692_10024765 Ga0207692_100247651 545
59 3300025899 Ga0207642_10007786 Ga0207642_100077862 545
60 3300025923 Ga0207681_10000345 Ga0207681_1000034514 545
61 3300025924 Ga0207694_10004870 Ga0207694_100048709 545
62 3300025936 Ga0207670_10003720 Ga0207670_100037205 545
63 3300025937 Ga0207669_10009618 Ga0207669_100096184 545
64 3300025940 Ga0207691_10099669 Ga0207691_100996692 545
65 3300025986 Ga0207658_10105355 Ga0207658_101053551 545
66 3300026089 Ga0207648_10118761 Ga0207648_101187611 545
67 3300026118 Ga0207675_100058764 Ga0207675_1000587642 545
68 3300028381 Ga0268264_10094115 Ga0268264_100941152 545
69 3300035118 Ga0373954_0028612 Ga0373954_0028612_111_2078 545
70 3300036401 Ga0373937_0018218 Ga0373937_0018218_1183_3150 545
71 3300049593 Ga0501077_0033305 Ga0501077_0033305_999_2894 546
72 3300005459 Ga0068867_100049773 Ga0068867_1000497732 548
73 3300005544 Ga0070686_100005400 Ga0070686_1000054002 548
74 3300046517 Ga0495630_0026849 Ga0495630_0026849_766_2439 548
75 3300046529 Ga0495652_0106515 Ga0495652_0106515_204_2045 548
76 3300046535 Ga0495586_0023859 Ga0495586_0023859_726_2399 548
77 3300046642 Ga0495634_0003190 Ga0495634_0003190_4230_5903 548
78 3300047471 Ga0495684_0011757 Ga0495684_0011757_4682_6523 548
79 3300053077 Ga0495601_0097106 Ga0495601_0097106_146_1819 548
80 3300005337 Ga0070682_100002770 Ga0070682_1000027706 549
81 3300005459 Ga0068867_100032032 Ga0068867_1000320323 549
82 3300026089 Ga0207648_10018648 Ga0207648_100186485 549
83 3300005530 Ga0070679_100002147 Ga0070679_1000021478 550
84 3300005535 Ga0070684_100103910 Ga0070684_1001039102 550
85 3300005539 Ga0068853_100012597 Ga0068853_1000125975 550
86 3300005563 Ga0068855_100005850 Ga0068855_10000585010 550
87 3300005327 Ga0070658_10009463 Ga0070658_100094633 551
88 3300025909 Ga0207705_10011782 Ga0207705_100117822 551
89 3300025921 Ga0207652_10010003 Ga0207652_100100034 551
90 3300044712 Ga0453684_0068841 Ga0453684_0068841_2011_3870 551
91 3300003323 rootH1_10133369 rootH1_101333692 553
92 3300005614 Ga0068856_100010351 Ga0068856_1000103513 553
93 3300005340 Ga0070689_100018475 Ga0070689_1000184753 554
94 3300005364 Ga0070673_100001074 Ga0070673_10000107410 554
95 3300005365 Ga0070688_100011656 Ga0070688_1000116564 554
96 3300009551 Ga0105238_10009130 Ga0105238_100091308 554
97 3300025924 Ga0207694_10008325 Ga0207694_100083252 554
98 3300025936 Ga0207670_10002798 Ga0207670_100027984 554
99 3300025940 Ga0207691_10015043 Ga0207691_100150436 554
100 3300025960 Ga0207651_10008737 Ga0207651_100087371 554
101 3300026121 Ga0207683_10013754 Ga0207683_100137543 554
102 3300031249 Ga0265339_10035582 Ga0265339_100355822 554
103 3300031711 Ga0265314_10018260 Ga0265314_100182603 554
104 3300031712 Ga0265342_10000371 Ga0265342_1000037136 554
105 3300048917 Ga0496114_0030788 Ga0496114_0030788_1290_2990 554
106 3300031239 Ga0265328_10000036 Ga0265328_1000003645 555
107 3300031240 Ga0265320_10000829 Ga0265320_1000082914 555
108 3300031249 Ga0265339_10001024 Ga0265339_1000102410 555
109 3300031711 Ga0265314_10002387 Ga0265314_100023874 555
110 3300031712 Ga0265342_10008191 Ga0265342_100081914 555
111 3300048903 Ga0496100_0040453 Ga0496100_0040453_414_2330 555
112 3300048917 Ga0496114_0000151 Ga0496114_0000151_31268_33184 555
113 3300005340 Ga0070689_100000001 Ga0070689_100000001582 556
114 3300009094 Ga0111539_10005126 Ga0111539_100051262 556
115 3300009545 Ga0105237_10000069 Ga0105237_1000006922 556
116 3300010375 Ga0105239_10215114 Ga0105239_102151141 556
117 3300025914 Ga0207671_10000154 Ga0207671_100001549 556
118 3300025936 Ga0207670_10000002 Ga0207670_10000002477 556
119 3300026089 Ga0207648_10027282 Ga0207648_100272822 556
120 3300027907 Ga0207428_10021180 Ga0207428_100211804 556
121 3300028800 Ga0265338_10004842 Ga0265338_1000484210 556
122 3300031239 Ga0265328_10000356 Ga0265328_100003568 556
123 3300031240 Ga0265320_10001029 Ga0265320_100010295 556
124 3300031249 Ga0265339_10011628 Ga0265339_100116282 556
125 3300031711 Ga0265314_10012196 Ga0265314_100121964 556
126 3300050511 nmdc:mga08y16_9881_c1 nmdc:mga08y16_9881_c1_186_1901 556
127 3300009093 Ga0105240_10000794 Ga0105240_1000079414 557
128 3300031247 Ga0265340_10006348 Ga0265340_100063483 557
129 3300041486 Ga0451807_1284663 Ga0451807_1284663_6935_8614 557
130 3300005563 Ga0068855_100000088 Ga0068855_10000008828 558
131 3300025949 Ga0207667_10001206 Ga0207667_1000120621 558
132 3300005614 Ga0068856_100013977 Ga0068856_1000139772 559
133 3300021388 Ga0213875_10000066 Ga0213875_1000006645 559
134 3300025925 Ga0207650_10026323 Ga0207650_100263233 559
135 3300025960 Ga0207651_10021940 Ga0207651_100219402 559
136 3300031235 Ga0265330_10003493 Ga0265330_100034933 559
137 3300037853 Ga0436364_0079644 Ga0436364_0079644_50000_51727 559
138 3300003323 rootH1_10108429 rootH1_101084292 561
139 3300005354 Ga0070675_100034610 Ga0070675_1000346102 561

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01229

Glyco_hydro_39

Glycosyl hydrolases family 39

108

614

0.77

Structural Annotation

Top 5 Hits

ID Description Score Start End
4m29-assembly1.cif.gz_A structure of a gh39 beta-xylosidase from caulobacter crescentus 0.8439 35 561
4m29-assembly1.cif.gz_A structure of a gh39 beta-xylosidase from caulobacter crescentus 0.8386 35 561
1px8-assembly1.cif.gz_A crystal structure of beta-d-xylosidase from thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase 0.8349 33 560
2bs9-assembly2.cif.gz_E native crystal structure of a gh39 beta-xylosidase xynb1 from geobacillus stearothermophilus 0.8328 37 559
4ekj-assembly1.cif.gz_A crystal structure of a monomeric beta-xylosidase from caulobacter crescentus cb15 0.8314 35 561
ID Description Score Start End Superfamily
2bfgC01 Mainly Beta;Sandwich;Immunoglobulin-like;Glycosyl hydrolase domain; family 39 0.8727 443 561 2.60.40.1500
1px8A01 Mainly Beta;Sandwich;Immunoglobulin-like;Glycosyl hydrolase domain; family 39 0.8576 443 560 2.60.40.1500
4m29A02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycosidases 0.8303 48 413 3.20.20.80
4m29A02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycosidases 0.8277 48 413 3.20.20.80
af_Q54J53_42_361_3.20.20.80 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycosidases 0.8196 48 411 3.20.20.80
ID Description Score Start End GO Terms
AF-A0A4Q3DNL3-F1-model_v4 Beta-xylosidase 0.9562 47 183 GO:0016798
AF-A0A7C5AJE6-F1-model_v4 Beta-xylosidase 0.9523 32 458 GO:0004553
GO:0005975
AF-A0A368JQZ9-F1-model_v4 Beta-xylosidase 0.9509 47 561 GO:0004553
GO:0005975
AF-A0A4R8CE65-F1-model_v4 deleted 0.9506 32 561
AF-A0A2V7UKE6-F1-model_v4 Beta-xylosidase 0.9504 167 561 GO:0004553
GO:0005975

Feature Viewer

pLDDT pTM Quality
87.07 0.88 High
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Predicted Structure (AlphaFold2)

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