F178146

General Info

Members Datasets Scaffolds Average Seq Length
140 100 280 874

Family's Representative Sequence

Representative Sequence 3300003203|JGI25406J46586_10002052|JGI25406J46586_100020521
Length 962
Sequence VTITDTDAPRGGNPAEEAASAPDSPLPPAAPGEKHLILVDGSGYIFRAFHALPPMTRPDGVPVNAVYGFTQMIAKFLTDHACTHIAVVFDAARTTFRSEIYPDYKANRPEPPPELVPQFALIRDATKAFGVACIEQPGFEADDMIATYARAFEAEGGRVTIVSSDKDMMQLVRPAVQMLDPIKQKPIREPEVMERFGVPPAKVVEVQALAGDSTDNVPGVPGIGVKTAAQLIAEYGDLETLLARASEIKQPKRREALIDNAEKARISRRLVTLVADVPLPEPISALEAQTAQDGRLESFLRTQGFRSILARLGFGEQPGMEHARRTLAKQAAAGQPAAPAVQIAPSLDLHCPYGPYETVTDLAALDHWIGRAREAGVVAIDTETDNLDPRRAQITGLSLAVAPGGACYVPLRHVAGTDMLAGPAPQQIPAEQAFAALRRVLEDHSILKVFQNAKYDMEVFACQENGELAPWPVDDVMMISYSLEAGRHGHGMDELAALHLGHKAISYDEVTGTGRARVPFRQVPLDKATAYAAEDADITLRLWHLLRPRLRSDNALALYEQVERRMIPVLRDMETAGVRVDGAELARIGEDFAQRLVLLEKQIHALAGREFNVGSPKQLGDILFGEMGHAGGRKGKTGAYSTDAAVLEELAAXGVELAARVLDWRQLAKLKSTYVEGLAAEIDARTGRVHTDYQMAVASTGRLSSIDPNLQNIPIRSEEGLRIRRAFVADPGHVLLSADYSQIELRLLAHLAEVPTLRDAFARGEDIHARTAAEIFHLAPGSVDREARRRAKTINFGIIYGMSAFGLASRLGIPPAEGRAIIDAYFAQYPGIRQEMERLKEEARTHGFVRTPFGRKIWIPDIGVRDPVRRAGAERAAINAPFQGGAAEVIKRAMVRLPKALREAGLSARMLLQVHDELVFEVPEAEVEPTGALVRQVMESVTTLRVPLAVDVGHGRSWAEAH

Samples

Sample ID Description Type Environment
1 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
2 3300000546 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJN_Illumina_Assembled Metagenome Rhizosphere
3 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
4 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
5 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
6 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
7 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
8 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
9 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
10 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
11 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
12 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
13 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
14 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
15 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
16 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
17 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
18 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
19 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
20 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
21 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
22 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
23 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
24 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
25 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
26 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
27 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
28 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
29 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
30 3300024225 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU5 Metagenome Rhizosphere
31 3300024227 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 Metagenome Rhizosphere
32 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
33 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
34 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
35 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300028017 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4 Metagenome Rhizosphere
50 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
52 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
53 3300030760 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
54 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
55 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
56 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
57 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
58 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
59 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
60 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
61 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
62 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
63 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
64 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
65 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
66 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
67 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
68 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
69 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
70 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
71 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
72 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
73 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
74 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
75 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
76 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
77 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
78 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
79 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
80 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
81 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
82 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
83 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
84 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
85 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
86 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
87 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
88 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
89 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
90 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
91 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
92 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
93 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
94 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
95 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
96 2842775625 Roseomonas sp. R-71825 Isolate Unclassified
97 2883577096 Roseococcus sp. SYP-B2431 Isolate Rhizosphere
98 2894772417 Roseomonas oryzicola KCTC 22478 Isolate Rhizosphere
99 2929199973 Roseomonas sp. R-73070 Hybrid assembly Isolate Unclassified
100 8055909800 Plastoroseomonas hellenica LMG 31523 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 94.29
Metatranscriptomes 2.14
Isolates 3.57

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.14
Nodule 0
Rhizoplane 2.14
Rhizosphere 90.71
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10002052 3300003203 Bacteria 9505
2 LJNas_1000681 3300000546 Bacteria 5740
3 JGI25406J46586_10002237 3300003203 Bacteria 9128
4 Ga0070709_10002908 3300005434 Bacteria 9233
5 Ga0070710_10003991 3300005437 Bacteria 6995
6 Ga0070705_100000637 3300005440 Bacteria 20087
7 Ga0070708_100000178 3300005445 Bacteria 45462
8 Ga0070708_100011702 3300005445 Bacteria 7142
9 Ga0070708_100019226 3300005445 Bacteria 5736
10 Ga0070706_100004453 3300005467 Bacteria 13529
11 Ga0070707_100000237 3300005468 Bacteria 55304
12 Ga0070707_100006658 3300005468 Bacteria 10704
13 Ga0070707_100016228 3300005468 Bacteria 6990
14 Ga0070698_100001198 3300005471 Bacteria 28769
15 Ga0070698_100068383 3300005471 Bacteria 3570
16 Ga0070699_100000699 3300005518 Bacteria 31141
17 Ga0070699_100037349 3300005518 Bacteria 4203
18 Ga0070679_100023882 3300005530 Bacteria 5989
19 Ga0070697_100000114 3300005536 Bacteria 63225
20 Ga0070697_100005880 3300005536 Bacteria 9468
21 Ga0070697_100039408 3300005536 Bacteria 3820
22 Ga0070697_100046078 3300005536 Bacteria 3534
23 Ga0070665_100001184 3300005548 Bacteria 31842
24 Ga0068863_100005455 3300005841 Bacteria 12531
25 Ga0068860_100017467 3300005843 Bacteria 6990
26 Ga0081538_10001779 3300005981 Bacteria 21748
27 Ga0081538_10002463 3300005981 Bacteria 18087
28 Ga0081538_10013076 3300005981 Bacteria 6600
29 Ga0081539_10000394 3300005985 Bacteria 93943
30 Ga0070716_100000961 3300006173 Bacteria 12493
31 Ga0070712_100006188 3300006175 Bacteria 7405
32 Ga0070712_100012506 3300006175 Bacteria 5395
33 Ga0097621_100047779 3300006237 Bacteria 3469
34 Ga0068871_100019103 3300006358 Bacteria 5227
35 Ga0075434_100004944 3300006871 Bacteria 12086
36 Ga0105240_10066966 3300009093 Bacteria 4453
37 Ga0114129_10034073 3300009147 Bacteria 7193
38 Ga0105238_10021076 3300009551 Bacteria 6641
39 Ga0105239_10088311 3300010375 Bacteria 3418
40 Ga0157374_10019655 3300013296 Bacteria 5981
41 Ga0163162_10005030 3300013306 Bacteria 12737
42 Ga0163162_10011499 3300013306 Bacteria 8631
43 Ga0157376_10000060 3300014969 Bacteria 95745
44 Ga0157376_10000154 3300014969 Bacteria 47198
45 Ga0157376_10008189 3300014969 Bacteria 7524
46 Ga0224572_1000283 3300024225 Bacteria 5316
47 Ga0228598_1000494 3300024227 Bacteria 8143
48 Ga0228598_1001216 3300024227 Bacteria 5684
49 Ga0209675_1000706 3300025291 Bacteria 22940
50 Ga0209676_1000049 3300025292 Bacteria 403210
51 Ga0209050_1007882 3300025298 Bacteria 5843
52 Ga0207692_10004896 3300025898 Bacteria 5334
53 Ga0207699_10001944 3300025906 Bacteria 9745
54 Ga0207684_10000274 3300025910 Bacteria 76497
55 Ga0207693_10044922 3300025915 Bacteria 3471
56 Ga0207663_10005179 3300025916 Bacteria 6558
57 Ga0207652_10018631 3300025921 Bacteria 5696
58 Ga0207646_10000131 3300025922 Bacteria 101819
59 Ga0207646_10000240 3300025922 Bacteria 75609
60 Ga0207646_10002708 3300025922 Bacteria 20768
61 Ga0207646_10029904 3300025922 Bacteria 4945
62 Ga0207664_10000004 3300025929 Bacteria 493014
63 Ga0207664_10001491 3300025929 Bacteria 15332
64 Ga0207664_10042473 3300025929 Bacteria 3549
65 Ga0207690_10036482 3300025932 Bacteria 3184
66 Ga0207665_10002052 3300025939 Bacteria 13568
67 Ga0207665_10039946 3300025939 Bacteria 3129
68 Ga0207678_10001104 3300026067 Bacteria 24734
69 Ga0207708_10023062 3300026075 Bacteria 4702
70 Ga0207641_10004722 3300026088 Bacteria 11747
71 Ga0207648_10027179 3300026089 Bacteria 5081
72 Ga0265356_1000003 3300028017 Bacteria 43423
73 Ga0268266_10000194 3300028379 Bacteria 106020
74 Ga0265323_10002324 3300028653 Bacteria 8801
75 Ga0265323_10004309 3300028653 Bacteria 6142
76 Ga0265338_10000180 3300028800 Bacteria 117822
77 Ga0265338_10004518 3300028800 Bacteria 18755
78 Ga0265338_10033964 3300028800 Bacteria 4940
79 Ga0265762_1000121 3300030760 Bacteria 11650
80 Ga0265760_10000064 3300031090 Bacteria 28923
81 Ga0265760_10002500 3300031090 Bacteria 5366
82 Ga0265330_10003233 3300031235 Bacteria 8586
83 Ga0265316_10000702 3300031344 Bacteria 37077
84 Ga0265316_10001262 3300031344 Bacteria 27172
85 Ga0265316_10005002 3300031344 Bacteria 13017
86 Ga0265316_10024901 3300031344 Bacteria 5002
87 Ga0265313_10022376 3300031595 Bacteria 3431
88 Ga0265342_10000234 3300031712 Bacteria 62499
89 Ga0316576_10019302 3300031727 Bacteria 4669
90 Ga0316576_10053742 3300031727 Bacteria 2935
91 Ga0316577_10000275 3300031733 Bacteria 18332
92 Ga0307415_100019325 3300032126 Bacteria 4135
93 Ga0373934_0003077 3300035086 Bacteria 6088
94 Ga0373954_0000279 3300035118 Bacteria 18566
95 Ga0373955_0001292 3300035172 Bacteria 10660
96 Ga0373933_0004427 3300035724 Bacteria 7709
97 Ga0373937_0004030 3300036401 Bacteria 12444
98 Ga0373937_0059956 3300036401 Bacteria 3497
99 Ga0316584_0041933 3300036712 Bacteria 3413
100 Ga0395900_0009169 3300037418 Bacteria 10140
101 Ga0395898_0004970 3300037466 Bacteria 14429
102 Ga0400483_160162 3300039062 Bacteria 4852
103 Ga0400483_183045 3300039062 Bacteria 21201
104 Ga0400489_04119 3300039093 Bacteria 27459
105 Ga0400489_62170 3300039093 Bacteria 28968
106 Ga0451577_0008419 3300042876 Bacteria 10039
107 Ga0453684_0006317 3300044712 Bacteria 22623
108 Ga0453684_0010400 3300044712 Bacteria 15922
109 Ga0453684_0034673 3300044712 Bacteria 6996
110 Ga0453684_0110016 3300044712 Bacteria 3350
111 Ga0451576_0009015 3300045051 Bacteria 11617
112 Ga0466967_0091650 3300045976 Bacteria 2762
113 Ga0495629_0013886 3300046459 Bacteria 5808
114 Ga0495580_0005439 3300046472 Bacteria 10524
115 Ga0495580_0027424 3300046472 Bacteria 4144
116 Ga0495582_0011255 3300046473 Bacteria 4929
117 Ga0495664_0016529 3300046477 Bacteria 4206
118 Ga0495594_0011024 3300046499 Bacteria 4695
119 Ga0495587_0011784 3300046536 Bacteria 5529
120 Ga0495623_0006252 3300046679 Bacteria 7745
121 Ga0495658_0005974 3300046683 Bacteria 5978
122 Ga0495658_0010052 3300046683 Bacteria 4726
123 Ga0495604_0001641 3300047317 Bacteria 18385
124 Ga0495672_0004759 3300047320 Bacteria 10960
125 Ga0495686_0021710 3300047472 Bacteria 4258
126 Ga0495602_0034986 3300048088 Bacteria 4690
127 Ga0496100_0003740 3300048903 Bacteria 7966
128 Ga0496102_0006625 3300048905 Bacteria 9898
129 Ga0496104_0053152 3300048907 Bacteria 3826
130 Ga0501071_0036501 3300049587 Bacteria 3506
131 nmdc:mga05p37_44733_c1 3300050507 Bacteria 5447
132 nmdc:mga09592_17486_c1 3300050508 Bacteria 5874
133 nmdc:mga0n895_4256_c1 3300050512 Bacteria 11707
134 nmdc:mga0n895_9929_c1 3300050512 Bacteria 8374
135 nmdc:mga0a205_15604_c1 3300050515 Bacteria 7099
136 2842777458 2842775625 Bacteria 5587290
137 2883579535 2883577096 Bacteria 4709178
138 2894776302 2894772417 Bacteria 5305674
139 2929200248 2929199973 Bacteria 7260745
140 8055912116 8055909800 Bacteria 7278581
141 JGI25406J46586_10002052
142 LJNas_1000681
143 JGI25406J46586_10002237
144 Ga0070709_10002908
145 Ga0070710_10003991
146 Ga0070705_100000637
147 Ga0070708_100000178
148 Ga0070708_100011702
149 Ga0070708_100019226
150 Ga0070706_100004453
151 Ga0070707_100000237
152 Ga0070707_100006658
153 Ga0070707_100016228
154 Ga0070698_100001198
155 Ga0070698_100068383
156 Ga0070699_100000699
157 Ga0070699_100037349
158 Ga0070679_100023882
159 Ga0070697_100000114
160 Ga0070697_100005880
161 Ga0070697_100039408
162 Ga0070697_100046078
163 Ga0070665_100001184
164 Ga0068863_100005455
165 Ga0068860_100017467
166 Ga0081538_10001779
167 Ga0081538_10002463
168 Ga0081538_10013076
169 Ga0081539_10000394
170 Ga0070716_100000961
171 Ga0070712_100006188
172 Ga0070712_100012506
173 Ga0097621_100047779
174 Ga0068871_100019103
175 Ga0075434_100004944
176 Ga0105240_10066966
177 Ga0114129_10034073
178 Ga0105238_10021076
179 Ga0105239_10088311
180 Ga0157374_10019655
181 Ga0163162_10005030
182 Ga0163162_10011499
183 Ga0157376_10000060
184 Ga0157376_10000154
185 Ga0157376_10008189
186 Ga0224572_1000283
187 Ga0228598_1000494
188 Ga0228598_1001216
189 Ga0209675_1000706
190 Ga0209676_1000049
191 Ga0209050_1007882
192 Ga0207692_10004896
193 Ga0207699_10001944
194 Ga0207684_10000274
195 Ga0207693_10044922
196 Ga0207663_10005179
197 Ga0207652_10018631
198 Ga0207646_10000131
199 Ga0207646_10000240
200 Ga0207646_10002708
201 Ga0207646_10029904
202 Ga0207664_10000004
203 Ga0207664_10001491
204 Ga0207664_10042473
205 Ga0207690_10036482
206 Ga0207665_10002052
207 Ga0207665_10039946
208 Ga0207678_10001104
209 Ga0207708_10023062
210 Ga0207641_10004722
211 Ga0207648_10027179
212 Ga0265356_1000003
213 Ga0268266_10000194
214 Ga0265323_10002324
215 Ga0265323_10004309
216 Ga0265338_10000180
217 Ga0265338_10004518
218 Ga0265338_10033964
219 Ga0265762_1000121
220 Ga0265760_10000064
221 Ga0265760_10002500
222 Ga0265330_10003233
223 Ga0265316_10000702
224 Ga0265316_10001262
225 Ga0265316_10005002
226 Ga0265316_10024901
227 Ga0265313_10022376
228 Ga0265342_10000234
229 Ga0316576_10019302
230 Ga0316576_10053742
231 Ga0316577_10000275
232 Ga0307415_100019325
233 Ga0373934_0003077
234 Ga0373954_0000279
235 Ga0373955_0001292
236 Ga0373933_0004427
237 Ga0373937_0004030
238 Ga0373937_0059956
239 Ga0316584_0041933
240 Ga0395900_0009169
241 Ga0395898_0004970
242 Ga0400483_160162
243 Ga0400483_183045
244 Ga0400489_04119
245 Ga0400489_62170
246 Ga0451577_0008419
247 Ga0453684_0006317
248 Ga0453684_0010400
249 Ga0453684_0034673
250 Ga0453684_0110016
251 Ga0451576_0009015
252 Ga0466967_0091650
253 Ga0495629_0013886
254 Ga0495580_0005439
255 Ga0495580_0027424
256 Ga0495582_0011255
257 Ga0495664_0016529
258 Ga0495594_0011024
259 Ga0495587_0011784
260 Ga0495623_0006252
261 Ga0495658_0005974
262 Ga0495658_0010052
263 Ga0495604_0001641
264 Ga0495672_0004759
265 Ga0495686_0021710
266 Ga0495602_0034986
267 Ga0496100_0003740
268 Ga0496102_0006625
269 Ga0496104_0053152
270 Ga0501071_0036501
271 nmdc:mga05p37_44733_c1
272 nmdc:mga09592_17486_c1
273 nmdc:mga0n895_4256_c1
274 nmdc:mga0n895_9929_c1
275 nmdc:mga0a205_15604_c1
276 2842777458
277 2883579535
278 2894776302
279 2929200248
280 8055912116

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00476

DNA_pol_A

DNA polymerase family A

582

960

0.98

PF01367

5_3_exonuc

5'-3' exonuclease, C-terminal SAM fold

198

294

0.97

PF02739

5_3_exonuc_N

5'-3' exonuclease, N-terminal resolvase-like domain

35

197

0.96

PF01612

DNA_pol_A_exo1

3'-5' exonuclease

356

551

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
8ooy-assembly1.cif.gz_A pol i bound to extended and displaced dna section - open conformation 0.9443 393 886
3po4-assembly1.cif.gz_A structure of a mutant of the large fragment of dna polymerase i from thermus aquaticus in complex with a blunt-ended dna and ddatp 0.9413 400 886
1ktq-assembly1.cif.gz_A dna polymerase 0.9413 400 886
6vdd-assembly2.cif.gz_D pol domain of pol1 from m. smegmatis complex with dna primer-template and dntp 0.9409 395 888
6vdd-assembly1.cif.gz_A pol domain of pol1 from m. smegmatis complex with dna primer-template and dntp 0.9409 395 886
ID Description Score Start End Superfamily
af_A8MQG8_313_403_1.10.150.20 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.9559 211 294 1.10.150.20
4ds5D04 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.9553 670 812 1.10.150.20
1tauA06 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.953 670 812 1.10.150.20
4c8nA04 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.9497 670 812 1.10.150.20
1bgxT05 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits; 0.9465 620 889 3.30.70.370
ID Description Score Start End GO Terms
AF-A0A6M1YNX4-F1-model_v4 DNA-directed DNA polymerase (EC 2.7.7.7) 0.9899 759 884 GO:0003677
GO:0003887
GO:0006261
GO:0006302
AF-A0A7Y2KKN1-F1-model_v4 DNA-directed DNA polymerase (EC 2.7.7.7) 0.9894 664 889 GO:0003677
GO:0003887
GO:0006261
GO:0006302
AF-A0A356TAC0-F1-model_v4 DNA-directed DNA polymerase (EC 2.7.7.7) 0.9891 666 815 GO:0003677
GO:0003887
GO:0006261
GO:0006302
AF-A0A6I2A0Y6-F1-model_v4 DNA-directed DNA polymerase (EC 2.7.7.7) 0.9884 766 889 GO:0003677
GO:0003887
GO:0006261
GO:0006302
AF-A0A838ESY2-F1-model_v4 DNA-directed DNA polymerase (EC 2.7.7.7) 0.9882 599 889 GO:0003677
GO:0003887
GO:0006261
GO:0006302

Map