F180970

General Info

Members Datasets Scaffolds Average Seq Length
140 100 139 202

Family's Representative Sequence

Representative Sequence 3300053136|Ga0500559_0007563|Ga0500559_0007563_2328_2981
Length 217
Sequence MRAFTRIRATAAALPIANVDTDKIIPARFLKTVSRTGLGTALFNDMRYWADGTPIPEFVLNRAPWDQAGILIAGDNFGCGSSREHAPWALLDFGITCIIAPSFADIFYNNCFKNGILPIIQSADVCDEMTQVASNPLTATTVVDLVDQEIVVSDRKIFNFEIDPGQKDILLNGRDDITMSLEKADDIAAFEAASEMRWMPGIPLNLLEAIERHDVAH

Samples

Sample ID Description Type Environment
1 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
2 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
3 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
4 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
5 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
6 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
7 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
8 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
9 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
10 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
11 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
12 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
13 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
14 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
15 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
16 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
17 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
18 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
19 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
20 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
21 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
22 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
23 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
24 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
25 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
26 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
27 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
28 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
29 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
30 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
31 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
32 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
45 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
46 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
47 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
48 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
49 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
50 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
51 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
52 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
53 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
54 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
55 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
56 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
57 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
58 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
59 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
60 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
61 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
62 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
63 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
64 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
65 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
66 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
67 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
68 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
69 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
70 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
71 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
72 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
73 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
74 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
75 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
76 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
77 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
78 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
79 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
82 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
83 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
84 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
85 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
86 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
87 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
88 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
89 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
90 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
91 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
92 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
93 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
96 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
97 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
98 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
99 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
100 8055909800 Plastoroseomonas hellenica LMG 31523 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 99.29
Metatranscriptomes 0
Isolates 0.71

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.71
Nodule 0
Rhizoplane 1.43
Rhizosphere 85
Stem 0
Stem Tuber 0
Unclassified 12.86

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070658_10408904 3300005327 Bacteria 1166
2 Ga0070680_100262972 3300005336 Bacteria 1460
3 Ga0070682_100428745 3300005337 Bacteria 1007
4 Ga0070660_100042158 3300005339 Bacteria 3483
5 Ga0070692_10741224 3300005345 Bacteria 665
6 Ga0070659_100083185 3300005366 Bacteria 2558
7 Ga0070659_100128302 3300005366 Bacteria 2058
8 Ga0070709_10255593 3300005434 Bacteria 1264
9 Ga0070714_100003278 3300005435 Bacteria 12056
10 Ga0070714_100202556 3300005435 Bacteria 1816
11 Ga0070714_100567048 3300005435 Bacteria 1088
12 Ga0070713_100003976 3300005436 Bacteria 9834
13 Ga0070713_100474387 3300005436 Bacteria 1178
14 Ga0070713_100672985 3300005436 Bacteria 987
15 Ga0070713_100713593 3300005436 Bacteria 958
16 Ga0070662_100145126 3300005457 Bacteria 1843
17 Ga0070681_10094291 3300005458 Bacteria 2942
18 Ga0070706_101293602 3300005467 Bacteria 669
19 Ga0068853_100014294 3300005539 Bacteria 6496
20 Ga0070665_100042927 3300005548 Bacteria 4545
21 Ga0070704_100105897 3300005549 Bacteria 2130
22 Ga0070704_100260589 3300005549 Bacteria 1428
23 Ga0068855_100288641 3300005563 Bacteria 1819
24 Ga0068856_100076439 3300005614 Bacteria 3318
25 Ga0068856_100255856 3300005614 Bacteria 1766
26 Ga0081455_10155387 3300005937 Bacteria 1759
27 Ga0070716_100191323 3300006173 Bacteria 1352
28 Ga0068871_100279035 3300006358 Unclassified 1461
29 Ga0075430_100018234 3300006846 Bacteria 5974
30 Ga0075436_100142800 3300006914 Bacteria 1683
31 Ga0105241_10401161 3300009174 Bacteria 1203
32 Ga0105237_10045963 3300009545 Bacteria 4393
33 Ga0105238_11579338 3300009551 Bacteria 686
34 Ga0105246_10022849 3300011119 Bacteria 4041
35 Ga0157371_10068387 3300013102 Bacteria 2514
36 Ga0157369_10025980 3300013105 Bacteria 6498
37 Ga0157369_10091439 3300013105 Bacteria 3248
38 Ga0157374_10011350 3300013296 Bacteria 7709
39 Ga0157374_10293894 3300013296 Bacteria 1606
40 Ga0213875_10000005 3300021388 Bacteria 595146
41 Ga0213875_10000044 3300021388 Bacteria 151004
42 Ga0213875_10059400 3300021388 Bacteria 1790
43 Ga0213875_10087909 3300021388 Bacteria 1449
44 Ga0213871_10049139 3300021441 Bacteria 1151
45 Ga0207707_10474444 3300025912 Bacteria 1069
46 Ga0207695_10011519 3300025913 Bacteria 10701
47 Ga0207671_10033157 3300025914 Bacteria 3843
48 Ga0207663_10532530 3300025916 Bacteria 916
49 Ga0207660_10253874 3300025917 Bacteria 1388
50 Ga0207657_10048598 3300025919 Bacteria 3703
51 Ga0207700_10010631 3300025928 Bacteria 5820
52 Ga0207700_10325394 3300025928 Unclassified 1333
53 Ga0207700_10591536 3300025928 Bacteria 987
54 Ga0207700_11173201 3300025928 Bacteria 686
55 Ga0207664_10154541 3300025929 Bacteria 1952
56 Ga0207679_10098160 3300025945 Bacteria 2283
57 Ga0207667_10151028 3300025949 Bacteria 2391
58 Ga0207667_10243501 3300025949 Bacteria 1840
59 Ga0207639_10016380 3300026041 Bacteria 5243
60 Ga0207702_10129493 3300026078 Bacteria 2269
61 Ga0265325_10000641 3300031241 Bacteria 25421
62 Ga0265313_10117986 3300031595 Bacteria 1160
63 Ga0373944_0167130 3300035089 Bacteria 783
64 Ga0373954_0049838 3300035118 Bacteria 1964
65 Ga0373931_0458600 3300035691 Bacteria 816
66 Ga0373935_0011713 3300035692 Bacteria 5268
67 Ga0373935_0108307 3300035692 Bacteria 1841
68 Ga0373927_0004194 3300035695 Bacteria 10124
69 Ga0373927_0364207 3300035695 Bacteria 953
70 Ga0373947_0596684 3300035725 Bacteria 753
71 Ga0373937_0023407 3300036401 Bacteria 5561
72 Ga0316582_0223283 3300036647 Bacteria 1288
73 Ga0373925_0052510 3300037068 Bacteria 3046
74 Ga0373925_0093554 3300037068 Unclassified 2301
75 Ga0436364_0006699 3300037853 Bacteria 906
76 Ga0436364_0157811 3300037853 Bacteria 430293
77 Ga0436364_0745557 3300037853 Bacteria 199469
78 Ga0436364_0751381 3300037853 Bacteria 1191
79 Ga0436364_0955334 3300037853 Bacteria 1689
80 Ga0436364_1154804 3300037853 Bacteria 1661
81 Ga0400483_154524 3300039062 Bacteria 26972
82 Ga0436365_0380328 3300039437 Bacteria 2499
83 Ga0436365_0695334 3300039437 Bacteria 5813
84 Ga0436365_1586476 3300039437 Bacteria 1396
85 Ga0436360_0203485 3300039438 Bacteria 42348
86 Ga0436361_0553023 3300039447 Bacteria 1260
87 Ga0436363_0431128 3300039450 Bacteria 2912
88 Ga0436363_0950688 3300039450 Bacteria 712
89 Ga0436362_0165711 3300039453 Bacteria 2221
90 Ga0466957_0454777 3300044842 Bacteria 883
91 Ga0495580_0074688 3300046472 Bacteria 2366
92 Ga0495669_0000007 3300046684 Bacteria 180797
93 Ga0495636_0172947 3300047318 Bacteria 977
94 Ga0496112_0051240 3300048915 Bacteria 4049
95 Ga0496115_0019122 3300048918 Bacteria 5268
96 Ga0496126_0039319 3300048929 Bacteria 4390
97 Ga0501031_0102915 3300049568 Bacteria 1863
98 Ga0501032_0006273 3300049569 Bacteria 8756
99 Ga0501032_0583977 3300049569 Bacteria 711
100 Ga0501033_0035158 3300049570 Bacteria 3757
101 Ga0501034_0015494 3300049571 Bacteria 7832
102 Ga0501034_0029155 3300049571 Bacteria 5610
103 Ga0501036_0007726 3300049572 Bacteria 8785
104 Ga0501037_0015646 3300049573 Bacteria 5584
105 Ga0501037_0339452 3300049573 Bacteria 1038
106 Ga0501038_0009641 3300049574 Bacteria 8858
107 Ga0501039_0004835 3300049575 Bacteria 10199
108 Ga0501041_0598158 3300049577 Bacteria 704
109 Ga0501042_0080273 3300049578 Bacteria 2337
110 Ga0501043_0000825 3300049579 Bacteria 27474
111 Ga0501043_0115896 3300049579 Bacteria 2103
112 Ga0501047_0012230 3300049581 Bacteria 8128
113 Ga0501047_0043501 3300049581 Bacteria 4338
114 Ga0501047_0302672 3300049581 Bacteria 1441
115 Ga0501048_0017663 3300049582 Bacteria 5251
116 Ga0501048_0371281 3300049582 Bacteria 1021
117 Ga0501068_0002862 3300049584 Bacteria 9183
118 Ga0501069_0002231 3300049585 Bacteria 9768
119 Ga0501070_0006919 3300049586 Bacteria 9652
120 Ga0501070_0013978 3300049586 Bacteria 6759
121 Ga0501070_0075380 3300049586 Bacteria 2793
122 Ga0501072_0002347 3300049588 Bacteria 14193
123 Ga0501073_0005591 3300049589 Bacteria 9404
124 Ga0501074_0009107 3300049590 Bacteria 7210
125 Ga0501076_0023218 3300049592 Bacteria 4779
126 Ga0501079_0089294 3300049741 Bacteria 2386
127 Ga0501080_0001024 3300049742 Bacteria 23007
128 Ga0501081_0141683 3300049743 Bacteria 1723
129 Ga0501083_0024191 3300049744 Bacteria 4210
130 Ga0501035_0020758 3300049822 Bacteria 6036
131 Ga0501035_0115785 3300049822 Bacteria 2346
132 Ga0501035_0469909 3300049822 Unclassified 1038
133 Ga0501044_0000814 3300049823 Bacteria 37495
134 Ga0501044_0037427 3300049823 Bacteria 5072
135 Ga0501045_0024163 3300049824 Bacteria 4362
136 nmdc:mga06r32_655948_c1 3300050510 Bacteria 1017
137 nmdc:mga08x19_127158_c1 3300050514 Bacteria 1712
138 Ga0500559_0007563 3300053136 Bacteria 4804
139 Ga0501084_0960523 3300054114 Bacteria 718

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300035691 Ga0373931_0458600 Ga0373931_0458600_31_516 161
2 3300005345 Ga0070692_10741224 Ga0070692_107412241 194
3 3300005549 Ga0070704_100260589 Ga0070704_1002605892 194
4 3300035692 Ga0373935_0108307 Ga0373935_0108307_246_830 194
5 3300035695 Ga0373927_0004194 Ga0373927_0004194_2827_3411 194
6 3300047318 Ga0495636_0172947 Ga0495636_0172947_207_791 194
7 3300011119 Ga0105246_10022849 Ga0105246_100228492 197
8 3300005435 Ga0070714_100003278 Ga0070714_1000032784 198
9 3300005436 Ga0070713_100003976 Ga0070713_1000039769 198
10 3300005436 Ga0070713_100713593 Ga0070713_1007135931 198
11 3300005467 Ga0070706_101293602 Ga0070706_1012936021 198
12 3300006914 Ga0075436_100142800 Ga0075436_1001428002 198
13 3300025916 Ga0207663_10532530 Ga0207663_105325302 198
14 3300025928 Ga0207700_10010631 Ga0207700_100106312 198
15 3300031241 Ga0265325_10000641 Ga0265325_1000064110 198
16 3300035089 Ga0373944_0167130 Ga0373944_0167130_135_731 198
17 3300035118 Ga0373954_0049838 Ga0373954_0049838_651_1247 198
18 3300035695 Ga0373927_0364207 Ga0373927_0364207_38_634 198
19 3300035725 Ga0373947_0596684 Ga0373947_0596684_119_715 198
20 3300036401 Ga0373937_0023407 Ga0373937_0023407_1805_2401 198
21 3300037068 Ga0373925_0052510 Ga0373925_0052510_924_1520 198
22 3300050514 nmdc:mga08x19_127158_c1 nmdc:mga08x19_127158_c1_774_1370 198
23 3300025928 Ga0207700_10325394 Ga0207700_103253942 199
24 3300009545 Ga0105237_10045963 Ga0105237_100459632 200
25 3300025913 Ga0207695_10011519 Ga0207695_100115193 200
26 3300025914 Ga0207671_10033157 Ga0207671_100331572 200
27 3300031595 Ga0265313_10117986 Ga0265313_101179862 200
28 3300036647 Ga0316582_0223283 Ga0316582_0223283_181_783 200
29 3300037853 Ga0436364_0006699 Ga0436364_0006699_155_772 200
30 3300046472 Ga0495580_0074688 Ga0495580_0074688_802_1404 200
31 3300049568 Ga0501031_0102915 Ga0501031_0102915_1170_1772 200
32 3300049569 Ga0501032_0006273 Ga0501032_0006273_3308_3910 200
33 3300049571 Ga0501034_0029155 Ga0501034_0029155_1358_1960 200
34 3300049572 Ga0501036_0007726 Ga0501036_0007726_3844_4446 200
35 3300049573 Ga0501037_0015646 Ga0501037_0015646_3636_4238 200
36 3300049574 Ga0501038_0009641 Ga0501038_0009641_7016_7618 200
37 3300049575 Ga0501039_0004835 Ga0501039_0004835_6121_6723 200
38 3300049578 Ga0501042_0080273 Ga0501042_0080273_346_948 200
39 3300049579 Ga0501043_0000825 Ga0501043_0000825_18787_19389 200
40 3300049581 Ga0501047_0043501 Ga0501047_0043501_3471_4073 200
41 3300049582 Ga0501048_0017663 Ga0501048_0017663_3519_4121 200
42 3300049584 Ga0501068_0002862 Ga0501068_0002862_2600_3202 200
43 3300049585 Ga0501069_0002231 Ga0501069_0002231_1813_2415 200
44 3300049586 Ga0501070_0006919 Ga0501070_0006919_1337_1939 200
45 3300049588 Ga0501072_0002347 Ga0501072_0002347_7227_7829 200
46 3300049589 Ga0501073_0005591 Ga0501073_0005591_1241_1843 200
47 3300049590 Ga0501074_0009107 Ga0501074_0009107_6471_7073 200
48 3300049592 Ga0501076_0023218 Ga0501076_0023218_3848_4450 200
49 3300049741 Ga0501079_0089294 Ga0501079_0089294_1358_1960 200
50 3300049742 Ga0501080_0001024 Ga0501080_0001024_3619_4221 200
51 3300049743 Ga0501081_0141683 Ga0501081_0141683_1086_1688 200
52 3300049744 Ga0501083_0024191 Ga0501083_0024191_3471_4073 200
53 3300049822 Ga0501035_0469909 Ga0501035_0469909_138_740 200
54 3300049824 Ga0501045_0024163 Ga0501045_0024163_1128_1730 200
55 3300054114 Ga0501084_0960523 Ga0501084_0960523_69_671 200
56 iso_pu_bacteria 8055909800 8055910751 200
57 3300021388 Ga0213875_10000005 Ga0213875_10000005239 202
58 3300021441 Ga0213871_10049139 Ga0213871_100491392 202
59 3300025928 Ga0207700_11173201 Ga0207700_111732011 202
60 3300037853 Ga0436364_0157811 Ga0436364_0157811_312100_312708 202
61 3300039437 Ga0436365_0380328 Ga0436365_0380328_1194_1802 202
62 3300039437 Ga0436365_0695334 Ga0436365_0695334_746_1354 202
63 3300039438 Ga0436360_0203485 Ga0436360_0203485_13837_14445 202
64 3300039447 Ga0436361_0553023 Ga0436361_0553023_486_1094 202
65 3300039450 Ga0436363_0431128 Ga0436363_0431128_369_977 202
66 3300048929 Ga0496126_0039319 Ga0496126_0039319_668_1276 202
67 3300049569 Ga0501032_0583977 Ga0501032_0583977_15_623 202
68 3300049570 Ga0501033_0035158 Ga0501033_0035158_2060_2668 202
69 3300049571 Ga0501034_0015494 Ga0501034_0015494_1507_2115 202
70 3300049573 Ga0501037_0339452 Ga0501037_0339452_148_756 202
71 3300049579 Ga0501043_0115896 Ga0501043_0115896_679_1287 202
72 3300049581 Ga0501047_0012230 Ga0501047_0012230_480_1088 202
73 3300049581 Ga0501047_0302672 Ga0501047_0302672_45_653 202
74 3300049582 Ga0501048_0371281 Ga0501048_0371281_355_963 202
75 3300049586 Ga0501070_0013978 Ga0501070_0013978_182_790 202
76 3300049586 Ga0501070_0075380 Ga0501070_0075380_24_632 202
77 3300049822 Ga0501035_0020758 Ga0501035_0020758_2370_2978 202
78 3300049822 Ga0501035_0115785 Ga0501035_0115785_841_1449 202
79 3300049823 Ga0501044_0000814 Ga0501044_0000814_12642_13250 202
80 3300049823 Ga0501044_0037427 Ga0501044_0037427_24_632 202
81 3300005435 Ga0070714_100202556 Ga0070714_1002025562 203
82 3300035692 Ga0373935_0011713 Ga0373935_0011713_211_822 203
83 3300037068 Ga0373925_0093554 Ga0373925_0093554_1620_2231 203
84 3300039062 Ga0400483_154524 Ga0400483_154524_14208_14834 203
85 3300005327 Ga0070658_10408904 Ga0070658_104089041 204
86 3300005336 Ga0070680_100262972 Ga0070680_1002629721 204
87 3300005337 Ga0070682_100428745 Ga0070682_1004287451 204
88 3300005339 Ga0070660_100042158 Ga0070660_1000421583 204
89 3300005366 Ga0070659_100083185 Ga0070659_1000831852 204
90 3300005366 Ga0070659_100128302 Ga0070659_1001283022 204
91 3300005434 Ga0070709_10255593 Ga0070709_102555931 204
92 3300005435 Ga0070714_100567048 Ga0070714_1005670482 204
93 3300005436 Ga0070713_100474387 Ga0070713_1004743872 204
94 3300005436 Ga0070713_100672985 Ga0070713_1006729851 204
95 3300005457 Ga0070662_100145126 Ga0070662_1001451262 204
96 3300005458 Ga0070681_10094291 Ga0070681_100942912 204
97 3300005539 Ga0068853_100014294 Ga0068853_1000142948 204
98 3300005548 Ga0070665_100042927 Ga0070665_1000429272 204
99 3300005549 Ga0070704_100105897 Ga0070704_1001058972 204
100 3300005563 Ga0068855_100288641 Ga0068855_1002886413 204
101 3300005614 Ga0068856_100076439 Ga0068856_1000764393 204
102 3300005614 Ga0068856_100255856 Ga0068856_1002558562 204
103 3300005937 Ga0081455_10155387 Ga0081455_101553872 204
104 3300006173 Ga0070716_100191323 Ga0070716_1001913231 204
105 3300006358 Ga0068871_100279035 Ga0068871_1002790352 204
106 3300006846 Ga0075430_100018234 Ga0075430_1000182345 204
107 3300009174 Ga0105241_10401161 Ga0105241_104011611 204
108 3300009551 Ga0105238_11579338 Ga0105238_115793381 204
109 3300013102 Ga0157371_10068387 Ga0157371_100683872 204
110 3300013105 Ga0157369_10025980 Ga0157369_100259808 204
111 3300013105 Ga0157369_10091439 Ga0157369_100914392 204
112 3300013296 Ga0157374_10011350 Ga0157374_100113502 204
113 3300013296 Ga0157374_10293894 Ga0157374_102938942 204
114 3300021388 Ga0213875_10000044 Ga0213875_1000004419 204
115 3300021388 Ga0213875_10059400 Ga0213875_100594002 204
116 3300021388 Ga0213875_10087909 Ga0213875_100879092 204
117 3300025912 Ga0207707_10474444 Ga0207707_104744442 204
118 3300025917 Ga0207660_10253874 Ga0207660_102538741 204
119 3300025919 Ga0207657_10048598 Ga0207657_100485983 204
120 3300025928 Ga0207700_10591536 Ga0207700_105915362 204
121 3300025929 Ga0207664_10154541 Ga0207664_101545412 204
122 3300025945 Ga0207679_10098160 Ga0207679_100981602 204
123 3300025949 Ga0207667_10151028 Ga0207667_101510282 204
124 3300025949 Ga0207667_10243501 Ga0207667_102435013 204
125 3300026041 Ga0207639_10016380 Ga0207639_100163806 204
126 3300026078 Ga0207702_10129493 Ga0207702_101294932 204
127 3300037853 Ga0436364_0745557 Ga0436364_0745557_14017_14631 204
128 3300037853 Ga0436364_0751381 Ga0436364_0751381_392_1006 204
129 3300037853 Ga0436364_0955334 Ga0436364_0955334_872_1489 204
130 3300037853 Ga0436364_1154804 Ga0436364_1154804_686_1300 204
131 3300039437 Ga0436365_1586476 Ga0436365_1586476_596_1210 204
132 3300039450 Ga0436363_0950688 Ga0436363_0950688_65_679 204
133 3300039453 Ga0436362_0165711 Ga0436362_0165711_514_1128 204
134 3300044842 Ga0466957_0454777 Ga0466957_0454777_160_774 204
135 3300046684 Ga0495669_0000007 Ga0495669_0000007_125931_126554 204
136 3300048915 Ga0496112_0051240 Ga0496112_0051240_2480_3094 204
137 3300048918 Ga0496115_0019122 Ga0496115_0019122_894_1508 204
138 3300049577 Ga0501041_0598158 Ga0501041_0598158_40_660 204
139 3300050510 nmdc:mga06r32_655948_c1 nmdc:mga06r32_655948_c1_235_861 204
140 3300053136 Ga0500559_0007563 Ga0500559_0007563_2328_2981 204

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00694

Aconitase_C

Aconitase C-terminal domain

1

124

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
3q3w-assembly1.cif.gz_A isopropylmalate isomerase small subunit from campylobacter jejuni. 0.9251 1 176
3h5j-assembly1.cif.gz_A leud_1-168 small subunit of isopropylmalate isomerase (rv2987c) from mycobacterium tuberculosis 0.9234 1 175
3h5j-assembly1.cif.gz_A leud_1-168 small subunit of isopropylmalate isomerase (rv2987c) from mycobacterium tuberculosis 0.9182 1 175
2hcu-assembly1.cif.gz_A crystal structure of smu.1381 (or leud) from streptococcus mutans 0.9103 1 175
3q3w-assembly1.cif.gz_A isopropylmalate isomerase small subunit from campylobacter jejuni. 0.9054 1 176
ID Description Score Start End Superfamily
af_O14289_535_712_3.20.19.10 Alpha Beta;Alpha-Beta Barrel;Aconitase; domain 4;Aconitase, domain 4 0.932 3 178 3.20.19.10
3q3wA00 Alpha Beta;Alpha-Beta Barrel;Aconitase; domain 4;Aconitase, domain 4 0.9306 1 176 3.20.19.10
af_Q2FWK0_1_171_3.20.19.10 Alpha Beta;Alpha-Beta Barrel;Aconitase; domain 4;Aconitase, domain 4 0.9284 2 175 3.20.19.10
3h5jA00 Alpha Beta;Alpha-Beta Barrel;Aconitase; domain 4;Aconitase, domain 4 0.9234 1 175 3.20.19.10
3q3wA00 Alpha Beta;Alpha-Beta Barrel;Aconitase; domain 4;Aconitase, domain 4 0.9206 1 176 3.20.19.10
ID Description Score Start End GO Terms
AF-A0A2V9KI05-F1-model_v4 3-isopropylmalate dehydratase (EC 4.2.1.33) 0.9787 1 130 GO:0003861
GO:0009098
GO:0009316
AF-A0A355Z4C0-F1-model_v4 deleted 0.9748 88 194
AF-A0A0N8GQA6-F1-model_v4 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) (Alpha-IPM isomerase) (IPMI) (Isopropylmalate isomerase) 0.9732 1 193 GO:0003861
GO:0009098
GO:0009316
GO:0016853
AF-A0A4R5TPE2-F1-model_v4 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) (Alpha-IPM isomerase) (IPMI) (Isopropylmalate isomerase) 0.9725 1 192 GO:0003861
GO:0009098
GO:0009316
AF-A0A8B5WRT2-F1-model_v4 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) (Alpha-IPM isomerase) (IPMI) (Isopropylmalate isomerase) 0.969 1 194 GO:0003861
GO:0009098
GO:0009316

Feature Viewer

pLDDT pTM Quality
93.25 0.87 High
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Predicted Structure (AlphaFold2)

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