F181663

General Info

Members Datasets Scaffolds Average Seq Length
141 115 282 382

Family's Representative Sequence

Representative Sequence 3300005338|Ga0068868_100000255|Ga0068868_10000025520
Length 401
Sequence MLGSIYIGLSGLTAYSRGLQTISNNVTNLNTPGFKATSFTFADSFSYGGIGASFSRYVGGQQLGTGVRYGHESIDFRQGDLRQSGGDLDFSIQGSGLLTLLNGDRTYYSRTGQFTVDKDGFIADSASGYRLGVLNSSGQAVAVSVDANRTNAPAATTRITFDGNLSSTAESAVNVADLAVYDSSGQRHVWKVTFEKVGATAPGEWKVTVTDGTTVITDPDHPPILKFIGSSVDPANATITIATTPAGADPQSVVLDFSGDVDSFSSGTLSTLRAAKVDGRGLGSLTSVTLDDTGQLKLTYSNQESELLGFVAIADVRDPQRLERVGTGLFRDAGGAGIRLLGSGQDGIGKLVSRQIEASNVDLSQQFGDLILVQRGFQASSQVISISNDMIQQLFGIRGQG

Samples

Sample ID Description Type Environment
1 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
4 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
5 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
6 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
7 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
8 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
9 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
10 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
11 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
12 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
13 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
14 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
15 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
16 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
17 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
18 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
19 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
20 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
21 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
22 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
23 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
24 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
25 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
26 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
27 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
28 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
29 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
30 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
31 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
32 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
33 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
34 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
35 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
36 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
37 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
38 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
39 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
60 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
61 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
62 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
63 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
64 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
65 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
66 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
67 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
68 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
69 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
70 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
71 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
72 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
73 3300042139 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0727L_E14_072516_1442 Metagenome Rhizosphere
74 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
75 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
76 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
77 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
78 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
79 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
80 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
81 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
82 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
83 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
84 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
85 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
86 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
87 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
88 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
89 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
90 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
91 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
92 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
93 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
94 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
95 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
96 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
97 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049853 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_A_2_drought Metagenome Rhizosphere
99 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
100 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
101 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
102 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
103 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
104 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
105 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
106 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
107 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
108 3300053724 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 endosphere Metagenome Endosphere
109 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
110 3300053735 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 endosphere Metagenome Endosphere
111 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
112 2643221622 Sphingomonas sp. Root241 Isolate Unclassified
113 2773857673 Pseudomonas sp. 443 Isolate Unclassified
114 2851153111 Caulobacter radicis 736 Isolate Unclassified
115 2941485952 Brevundimonas faecalis 2814 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.16
Metatranscriptomes 0
Isolates 2.84

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 17.02
Nodule 0
Rhizoplane 2.84
Rhizosphere 70.21
Stem 0
Stem Tuber 0
Unclassified 2.84

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0068868_100000255 3300005338 Bacteria 36333
2 SwRhRL2b_contig_1675143 2162886007 Bacteria 8587
3 Ga0055530_10000044 3300003791 Bacteria 110073
4 Ga0055531_10000072 3300003794 Bacteria 110069
5 Ga0065165_1003502 3300005262 Bacteria 10912
6 Ga0065704_10000335 3300005289 Bacteria 35581
7 Ga0068869_100134383 3300005334 Bacteria 1904
8 Ga0068869_100240846 3300005334 Bacteria 1441
9 Ga0070660_100000961 3300005339 Bacteria 19268
10 Ga0070660_100122199 3300005339 Bacteria 2078
11 Ga0070661_100000018 3300005344 Bacteria 135723
12 Ga0070669_100000654 3300005353 Bacteria 25634
13 Ga0070659_100000025 3300005366 Bacteria 144955
14 Ga0070694_100003369 3300005444 Bacteria 9572
15 Ga0070665_100072981 3300005548 Bacteria 3439
16 Ga0068855_100004462 3300005563 Bacteria 17108
17 Ga0068855_100234819 3300005563 Bacteria 2051
18 Ga0068854_100000178 3300005578 Bacteria 43519
19 Ga0068852_100098163 3300005616 Bacteria 2637
20 Ga0068859_100008181 3300005617 Bacteria 10608
21 Ga0068859_100050127 3300005617 Bacteria 4194
22 Ga0068861_100000001 3300005719 Bacteria 116118
23 Ga0068860_100001294 3300005843 Bacteria 27190
24 Ga0068860_100011744 3300005843 Bacteria 8630
25 Ga0068860_100103691 3300005843 Bacteria 2715
26 Ga0068862_100000191 3300005844 Bacteria 67742
27 Ga0068862_100003265 3300005844 Bacteria 14033
28 Ga0081539_10027806 3300005985 Bacteria 3573
29 Ga0075370_10116948 3300006353 Bacteria 1550
30 Ga0075434_100134538 3300006871 Bacteria 2492
31 Ga0097620_100008181 3300006931 Bacteria 10608
32 Ga0097620_100050123 3300006931 Bacteria 4194
33 Ga0105251_10000132 3300009011 Bacteria 75189
34 Ga0105251_10000943 3300009011 Bacteria 25987
35 Ga0105250_10000331 3300009092 Bacteria 36529
36 Ga0105245_10003720 3300009098 Bacteria 13590
37 Ga0105247_10024543 3300009101 Bacteria 3634
38 Ga0105248_10076027 3300009177 Bacteria 3774
39 Ga0105238_10268143 3300009551 Bacteria 1688
40 Ga0105238_10370065 3300009551 Bacteria 1423
41 Ga0105249_10000874 3300009553 Bacteria 26758
42 Ga0105249_10041994 3300009553 Bacteria 4158
43 Ga0105249_10058815 3300009553 Unclassified 3524
44 Ga0157369_10000828 3300013105 Bacteria 39560
45 Ga0157369_10104411 3300013105 Bacteria 3017
46 Ga0157374_10003946 3300013296 Bacteria 12470
47 Ga0182006_1022581 3300015261 Bacteria 2614
48 Ga0209676_1026271 3300025292 Bacteria 1852
49 Ga0209758_1001878 3300025297 Bacteria 23002
50 Ga0209758_1002778 3300025297 Bacteria 17142
51 Ga0209758_1006256 3300025297 Bacteria 8666
52 Ga0209050_1000014 3300025298 Bacteria 774327
53 Ga0209050_1001936 3300025298 Bacteria 19689
54 Ga0209257_1000019 3300025304 Bacteria 774261
55 Ga0209257_1004051 3300025304 Bacteria 11776
56 Ga0207696_1000359 3300025711 Bacteria 45875
57 Ga0207713_1000224 3300025735 Bacteria 76504
58 Ga0207713_1001181 3300025735 Bacteria 22022
59 Ga0207647_10007994 3300025904 Bacteria 7605
60 Ga0207705_10016398 3300025909 Bacteria 5311
61 Ga0207657_10006551 3300025919 Bacteria 12056
62 Ga0207657_10038713 3300025919 Bacteria 4242
63 Ga0207649_10000034 3300025920 Bacteria 136049
64 Ga0207681_10000478 3300025923 Bacteria 27965
65 Ga0207694_10138466 3300025924 Bacteria 1956
66 Ga0207690_10000005 3300025932 Bacteria 581199
67 Ga0207706_10080333 3300025933 Bacteria 2867
68 Ga0207691_10062339 3300025940 Bacteria 3384
69 Ga0207689_10267390 3300025942 Bacteria 1415
70 Ga0207667_10001055 3300025949 Bacteria 34969
71 Ga0207712_10000597 3300025961 Bacteria 28909
72 Ga0207712_10033245 3300025961 Unclassified 3485
73 Ga0207640_10000605 3300025981 Bacteria 21224
74 Ga0207677_10000059 3300026023 Bacteria 94553
75 Ga0207675_100000196 3300026118 Bacteria 55631
76 Ga0268266_10003940 3300028379 Bacteria 14430
77 Ga0268265_10000271 3300028380 Bacteria 58874
78 Ga0268265_10043658 3300028380 Unclassified 3334
79 Ga0268264_10001022 3300028381 Bacteria 28163
80 Ga0268264_10007650 3300028381 Bacteria 9005
81 Ga0268264_10018182 3300028381 Bacteria 5748
82 Ga0265320_10000202 3300031240 Bacteria 48735
83 Ga0265325_10004788 3300031241 Bacteria 8480
84 Ga0307513_10101383 3300031456 Bacteria 2900
85 Ga0307412_10001874 3300031911 Bacteria 11637
86 Ga0307416_100007784 3300032002 Bacteria 6850
87 Ga0307510_10000656 3300033180 Bacteria 35105
88 Ga0395905_0069350 3300037471 Unclassified 3302
89 Ga0395905_0133754 3300037471 Bacteria 2333
90 Ga0439436_0031406 3300041404 Bacteria 1541
91 Ga0439461_0000635 3300041410 Bacteria 5063
92 Ga0439466_0026989 3300041411 Bacteria 1992
93 Ga0439465_0000020 3300041413 Bacteria 32731
94 Ga0439431_0000030 3300041997 Bacteria 22183
95 Ga0439432_000484 3300042006 Bacteria 14868
96 Ga0439462_0000418 3300042015 Bacteria 8233
97 Ga0450904_000102 3300042139 Bacteria 19193
98 Ga0439434_0000023 3300042435 Bacteria 37093
99 Ga0495627_000328 3300046453 Bacteria 45660
100 Ga0495638_0000137 3300046460 Bacteria 116065
101 Ga0495650_0000820 3300046471 Bacteria 37855
102 Ga0495597_0051456 3300046542 Bacteria 1816
103 Ga0495625_0000034 3300046660 Bacteria 225120
104 Ga0495625_0000092 3300046660 Bacteria 146172
105 Ga0495670_0047223 3300046691 Bacteria 2152
106 Ga0495649_0000346 3300046694 Bacteria 39819
107 Ga0495672_0001062 3300047320 Bacteria 28044
108 Ga0495686_0027414 3300047472 Bacteria 3719
109 Ga0495686_0029914 3300047472 Bacteria 3539
110 Ga0496104_0000374 3300048907 Bacteria 39571
111 Ga0496105_0000196 3300048908 Bacteria 40474
112 Ga0496114_0173171 3300048917 Bacteria 1882
113 Ga0496115_0017177 3300048918 Bacteria 5524
114 Ga0496116_0007084 3300048919 Bacteria 10037
115 Ga0496117_0000883 3300048920 Bacteria 46186
116 Ga0496118_0000911 3300048921 Bacteria 46185
117 Ga0496119_0000672 3300048922 Bacteria 45818
118 Ga0496120_0002404 3300048923 Bacteria 19034
119 Ga0496121_0001479 3300048924 Bacteria 39563
120 Ga0496122_0003672 3300048925 Bacteria 19907
121 Ga0496123_0005780 3300048926 Bacteria 12287
122 Ga0496124_0010711 3300048927 Bacteria 9249
123 Ga0501047_0000761 3300049581 Bacteria 33700
124 Ga0501226_000059 3300049853 Bacteria 36804
125 nmdc:mga07m45_71685_c1 3300050496 Bacteria 1971
126 Ga0500643_000619 3300053087 Bacteria 24051
127 Ga0500644_0000550 3300053088 Bacteria 15148
128 Ga0500651_0004350 3300053093 Bacteria 7918
129 Ga0500641_0064889 3300053096 Bacteria 1526
130 Ga0500562_028497 3300053108 Bacteria 1468
131 Ga0500655_000032 3300053133 Bacteria 38938
132 Ga0500658_0003169 3300053134 Bacteria 6274
133 Ga0500573_0000090 3300053140 Bacteria 41819
134 Ga0500570_000225 3300053724 Bacteria 18527
135 Ga0500645_000591 3300053730 Bacteria 23415
136 Ga0500596_003081 3300053735 Bacteria 3204
137 Ga0501082_0003652 3300060353 Bacteria 13437
138 2644128672 2643221622 Bacteria 4212502
139 2774137727 2773857673 Bacteria 6513460
140 2851155331 2851153111 Bacteria 5542585
141 2941486418 2941485952 Bacteria 3591484
142 Ga0068868_100000255
143 SwRhRL2b_contig_1675143
144 Ga0055530_10000044
145 Ga0055531_10000072
146 Ga0065165_1003502
147 Ga0065704_10000335
148 Ga0068869_100134383
149 Ga0068869_100240846
150 Ga0070660_100000961
151 Ga0070660_100122199
152 Ga0070661_100000018
153 Ga0070669_100000654
154 Ga0070659_100000025
155 Ga0070694_100003369
156 Ga0070665_100072981
157 Ga0068855_100004462
158 Ga0068855_100234819
159 Ga0068854_100000178
160 Ga0068852_100098163
161 Ga0068859_100008181
162 Ga0068859_100050127
163 Ga0068861_100000001
164 Ga0068860_100001294
165 Ga0068860_100011744
166 Ga0068860_100103691
167 Ga0068862_100000191
168 Ga0068862_100003265
169 Ga0081539_10027806
170 Ga0075370_10116948
171 Ga0075434_100134538
172 Ga0097620_100008181
173 Ga0097620_100050123
174 Ga0105251_10000132
175 Ga0105251_10000943
176 Ga0105250_10000331
177 Ga0105245_10003720
178 Ga0105247_10024543
179 Ga0105248_10076027
180 Ga0105238_10268143
181 Ga0105238_10370065
182 Ga0105249_10000874
183 Ga0105249_10041994
184 Ga0105249_10058815
185 Ga0157369_10000828
186 Ga0157369_10104411
187 Ga0157374_10003946
188 Ga0182006_1022581
189 Ga0209676_1026271
190 Ga0209758_1001878
191 Ga0209758_1002778
192 Ga0209758_1006256
193 Ga0209050_1000014
194 Ga0209050_1001936
195 Ga0209257_1000019
196 Ga0209257_1004051
197 Ga0207696_1000359
198 Ga0207713_1000224
199 Ga0207713_1001181
200 Ga0207647_10007994
201 Ga0207705_10016398
202 Ga0207657_10006551
203 Ga0207657_10038713
204 Ga0207649_10000034
205 Ga0207681_10000478
206 Ga0207694_10138466
207 Ga0207690_10000005
208 Ga0207706_10080333
209 Ga0207691_10062339
210 Ga0207689_10267390
211 Ga0207667_10001055
212 Ga0207712_10000597
213 Ga0207712_10033245
214 Ga0207640_10000605
215 Ga0207677_10000059
216 Ga0207675_100000196
217 Ga0268266_10003940
218 Ga0268265_10000271
219 Ga0268265_10043658
220 Ga0268264_10001022
221 Ga0268264_10007650
222 Ga0268264_10018182
223 Ga0265320_10000202
224 Ga0265325_10004788
225 Ga0307513_10101383
226 Ga0307412_10001874
227 Ga0307416_100007784
228 Ga0307510_10000656
229 Ga0395905_0069350
230 Ga0395905_0133754
231 Ga0439436_0031406
232 Ga0439461_0000635
233 Ga0439466_0026989
234 Ga0439465_0000020
235 Ga0439431_0000030
236 Ga0439432_000484
237 Ga0439462_0000418
238 Ga0450904_000102
239 Ga0439434_0000023
240 Ga0495627_000328
241 Ga0495638_0000137
242 Ga0495650_0000820
243 Ga0495597_0051456
244 Ga0495625_0000034
245 Ga0495625_0000092
246 Ga0495670_0047223
247 Ga0495649_0000346
248 Ga0495672_0001062
249 Ga0495686_0027414
250 Ga0495686_0029914
251 Ga0496104_0000374
252 Ga0496105_0000196
253 Ga0496114_0173171
254 Ga0496115_0017177
255 Ga0496116_0007084
256 Ga0496117_0000883
257 Ga0496118_0000911
258 Ga0496119_0000672
259 Ga0496120_0002404
260 Ga0496121_0001479
261 Ga0496122_0003672
262 Ga0496123_0005780
263 Ga0496124_0010711
264 Ga0501047_0000761
265 Ga0501226_000059
266 nmdc:mga07m45_71685_c1
267 Ga0500643_000619
268 Ga0500644_0000550
269 Ga0500651_0004350
270 Ga0500641_0064889
271 Ga0500562_028497
272 Ga0500655_000032
273 Ga0500658_0003169
274 Ga0500573_0000090
275 Ga0500570_000225
276 Ga0500645_000591
277 Ga0500596_003081
278 Ga0501082_0003652
279 2644128672
280 2774137727
281 2851155331
282 2941486418

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00460

Flg_bb_rod

Flagella basal body rod protein

5

35

0.98

PF06429

Flg_bbr_C

Flagellar basal body rod FlgEFG protein C-terminal

352

397

0.94

PF22692

LlgE_F_G_D1

Flagellar hook protein FlgE/F/G D1 domain

91

168

0.77

PF07559

FlgE_D2

Flagellar basal body protein FlaE D2 domain

144

310

0.57

Structural Annotation

Top 5 Hits

ID Description Score Start End
7cgo-assembly1.cif.gz_P cryo-em structure of the flagellar motor-hook complex from salmonella 0.8534 2 378
7cgo-assembly1.cif.gz_Q cryo-em structure of the flagellar motor-hook complex from salmonella 0.8532 2 378
7cgo-assembly1.cif.gz_N cryo-em structure of the flagellar motor-hook complex from salmonella 0.8408 2 378
7nvg-assembly1.cif.gz_l2 salmonella flagellar basal body refined in c1 map 0.8374 2 378
7cgo-assembly1.cif.gz_R cryo-em structure of the flagellar motor-hook complex from salmonella 0.8357 2 378
ID Description Score Start End Superfamily
af_Q5XVJ3_12_175_3.40.1000.30 Alpha Beta;3-Layer(aba) Sandwich;Protein Transport Mog1p; Chain A; 0.8655 178 209 3.40.1000.30
af_A0A0P0XPG5_17_403_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.8156 265 289 3.50.50.60
af_Q4DVH6_123_446_3.60.21.10 Alpha Beta;4-Layer Sandwich;Purple Acid Phosphatase; chain A, domain 2;Metallo-dependent phosphatases 0.7825 180 209 3.60.21.10
af_Q2FVP8_1_145_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.7787 265 289 3.50.50.60
af_G5EDG8_2_147_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.7704 265 290 3.50.50.60
ID Description Score Start End GO Terms
AF-A0A2D7KBP0-F1-model_v4 deleted 0.9396 2 382
AF-W0ACM5-F1-model_v4 Flagellar hook protein FlgE 0.9309 2 383 GO:0005829
GO:0009424
GO:0009425
GO:0071978
AF-A0A2D7KBP0-F1-model_v4 deleted 0.9277 2 382
AF-W0ACM5-F1-model_v4 Flagellar hook protein FlgE 0.9262 2 383 GO:0005829
GO:0009424
GO:0009425
GO:0071978
AF-A0A0M3AFB2-F1-model_v4 Flagellar hook protein FlgE 0.9084 2 383 GO:0005829
GO:0009424
GO:0009425
GO:0071978

Map