F183271

General Info

Members Datasets Scaffolds Average Seq Length
141 80 138 228

Family's Representative Sequence

Representative Sequence 3300036712|Ga0316584_0001857|Ga0316584_0001857_11472_12299
Length 275
Sequence MFLYQMNLLFSNYSCSITKNSVVKDLLIIFSSTEFVFLPLMSTILHIETSTDICSVCLAREGEIISIKETDIERSHAGILTVFISEIMEESMQRRQKLDAIAVSMGPGSYTGLRIGVSVAKGICYGADLPLISVPTLEAMCIGALRKFSQDIEKNGLLIPMIDARRMEVYMAIYDTGMNLIEKTSATVINENTFRKHLGAHRIFLFGTGAVKLKNWFNHENICFLEDFKISSRYMVDIALQRFKLNRFEDVAYFEPYYLKDFIATTPKKNQLFRS

Samples

Sample ID Description Type Environment
1 2890737413 Parapedobacter sp. SGR-10 Isolate Rhizosphere
2 2896317667 Sphingobacterium sp. SGR-19 Isolate Rhizosphere
3 2898713307 Sphingobacterium sp. SGG-5 Isolate Rhizosphere
4 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
5 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
6 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
7 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
8 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
9 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
10 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
11 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
12 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
13 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
14 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
15 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
16 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
17 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
18 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
19 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
20 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
21 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
22 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
23 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
24 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
25 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
26 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
27 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
28 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
29 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
30 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
31 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
32 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
33 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
36 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
37 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
38 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
39 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
57 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
58 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
59 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
60 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
61 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
62 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
63 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
64 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
65 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
66 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
67 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
68 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
69 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
70 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
71 3300041456 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_5 MetaG Metagenome Rhizoplane
72 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
73 3300041511 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_12 MetaG Metagenome Unclassified
74 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
75 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
76 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
77 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
78 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
79 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
80 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.87
Metatranscriptomes 0
Isolates 2.13

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.71
Nodule 0
Rhizoplane 0.71
Rhizosphere 85.11
Stem 0
Stem Tuber 0
Unclassified 13.48

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10023546 3300003316 Bacteria 7670
2 rootL2_10241030 3300003322 Bacteria 3473
3 rootL2_10344866 3300003322 Bacteria 1639
4 rootH1_10005039 3300003323 Bacteria 61014
5 rootH1_10077722 3300003323 Unclassified 2381
6 rootH1_10092053 3300003323 Bacteria 1856
7 rootH1_10155982 3300003323 Unclassified 2241
8 Ga0065712_10004413 3300005290 Bacteria 7080
9 Ga0070676_10342439 3300005328 Bacteria 1026
10 Ga0070690_100090161 3300005330 Unclassified 2018
11 Ga0070670_100011115 3300005331 Bacteria 7692
12 Ga0068869_100066238 3300005334 Unclassified 2661
13 Ga0070660_100248212 3300005339 Bacteria 1451
14 Ga0070689_100140015 3300005340 Unclassified 1945
15 Ga0070668_100237542 3300005347 Bacteria 1508
16 Ga0070669_100002596 3300005353 Bacteria 13056
17 Ga0070675_100149237 3300005354 Unclassified 2003
18 Ga0070673_100002159 3300005364 Bacteria 11913
19 Ga0070700_100094615 3300005441 Unclassified 1956
20 Ga0068867_100015178 3300005459 Bacteria 5463
21 Ga0070685_10130774 3300005466 Bacteria 1569
22 Ga0068853_100103685 3300005539 Bacteria 2518
23 Ga0070672_100185477 3300005543 Bacteria 1735
24 Ga0068857_100008243 3300005577 Bacteria 9004
25 Ga0068854_100032992 3300005578 Unclassified 3607
26 Ga0068856_100036240 3300005614 Bacteria 4837
27 Ga0068859_100013560 3300005617 Bacteria 8172
28 Ga0068866_10399416 3300005718 Unclassified 886
29 Ga0068861_100000424 3300005719 Bacteria 24519
30 Ga0068870_10004485 3300005840 Bacteria 6011
31 Ga0068860_100334134 3300005843 Bacteria 1489
32 Ga0068862_100005101 3300005844 Bacteria 11049
33 Ga0068865_100304384 3300006881 Bacteria 1277
34 Ga0097620_100013561 3300006931 Bacteria 8172
35 Ga0111539_10140936 3300009094 Unclassified 2822
36 Ga0105249_10005844 3300009553 Bacteria 10646
37 Ga0157375_10037772 3300013308 Bacteria 4630
38 Ga0157380_10004495 3300014326 Bacteria 9668
39 Ga0157377_10005097 3300014745 Bacteria 6140
40 Ga0207688_10147862 3300025901 Bacteria 1386
41 Ga0207647_10104095 3300025904 Bacteria 1682
42 Ga0207645_10015710 3300025907 Bacteria 5022
43 Ga0207643_10054565 3300025908 Bacteria 2272
44 Ga0207681_10003840 3300025923 Bacteria 9323
45 Ga0207706_10027153 3300025933 Bacteria 5120
46 Ga0207670_10286184 3300025936 Bacteria 1286
47 Ga0207691_10191807 3300025940 Bacteria 1782
48 Ga0207689_10121552 3300025942 Unclassified 2148
49 Ga0207712_10056675 3300025961 Bacteria 2761
50 Ga0207668_10315561 3300025972 Bacteria 1295
51 Ga0207640_10522701 3300025981 Bacteria 992
52 Ga0207702_10034201 3300026078 Bacteria 4248
53 Ga0207648_10016291 3300026089 Bacteria 6797
54 Ga0207674_10014347 3300026116 Bacteria 8754
55 Ga0207675_100000496 3300026118 Bacteria 38204
56 Ga0268265_10008576 3300028380 Bacteria 6906
57 Ga0307517_10022152 3300028786 Bacteria 7976
58 Ga0307515_10000411 3300028794 Bacteria 103597
59 Ga0265327_10068657 3300031251 Bacteria 1782
60 Ga0265316_10000434 3300031344 Bacteria 47748
61 Ga0265316_10007268 3300031344 Bacteria 10450
62 Ga0307514_10125656 3300031649 Unclassified 1778
63 Ga0316579_10137913 3300031691 Viruses 1176
64 Ga0265342_10172595 3300031712 Bacteria 1188
65 Ga0316576_10009003 3300031727 Bacteria 6417
66 Ga0316576_10085873 3300031727 Bacteria 2339
67 Ga0316576_10330857 3300031727 Bacteria 1135
68 Ga0316578_10015476 3300031728 Bacteria 4102
69 Ga0316578_10094617 3300031728 Bacteria 1787
70 Ga0316578_10362390 3300031728 Bacteria 862
71 Ga0316577_10041956 3300031733 Unclassified 2560
72 Ga0316577_10112099 3300031733 Bacteria 1531
73 Ga0316580_10010832 3300032139 Bacteria 2763
74 Ga0316574_0050905 3300035398 Bacteria 2580
75 Ga0316574_0056389 3300035398 Bacteria 2458
76 Ga0316582_0015497 3300036647 Bacteria 4361
77 Ga0316582_0163113 3300036647 Bacteria 1510
78 Ga0316584_0001857 3300036712 Bacteria 13088
79 Ga0316584_0130840 3300036712 Unclassified 1874
80 Ga0316584_0313483 3300036712 Bacteria 1133
81 Ga0400489_25026 3300039093 Bacteria 1725
82 Ga0451795_0249686 3300041456 Bacteria 695
83 Ga0451837_1490012 3300041494 Bacteria 922
84 Ga0451855_0542426 3300041511 Bacteria 825
85 Ga0451855_0763811 3300041511 Unclassified 1142
86 Ga0451855_1086141 3300041511 Bacteria 1003
87 Ga0451855_1339985 3300041511 Bacteria 1532
88 Ga0451855_1369894 3300041511 Bacteria 991
89 Ga0451855_1882010 3300041511 Bacteria 1657
90 Ga0451855_2012330 3300041511 Unclassified 1636
91 Ga0451577_0000048 3300042876 Bacteria 309377
92 Ga0451577_0025295 3300042876 Bacteria 5388
93 Ga0451577_0061268 3300042876 Bacteria 3355
94 Ga0451577_0062616 3300042876 Bacteria 3318
95 Ga0451577_0104754 3300042876 Bacteria 2528
96 Ga0451577_0115053 3300042876 Bacteria 2408
97 Ga0451577_0248760 3300042876 Unclassified 1609
98 Ga0451577_0275551 3300042876 Unclassified 1524
99 Ga0451577_0506487 3300042876 Unclassified 1096
100 Ga0453683_0000078 3300044673 Bacteria 147056
101 Ga0453683_0000755 3300044673 Bacteria 32598
102 Ga0453683_0065508 3300044673 Unclassified 2271
103 Ga0453683_0150915 3300044673 Bacteria 1468
104 Ga0453684_0000161 3300044712 Bacteria 298175
105 Ga0453684_0000525 3300044712 Bacteria 146588
106 Ga0453684_0003254 3300044712 Bacteria 37126
107 Ga0453684_0005857 3300044712 Bacteria 23891
108 Ga0453684_0007831 3300044712 Bacteria 19464
109 Ga0453684_0010835 3300044712 Bacteria 15453
110 Ga0453684_0012824 3300044712 Bacteria 13741
111 Ga0453684_0019107 3300044712 Bacteria 10458
112 Ga0453684_0033163 3300044712 Bacteria 7204
113 Ga0453684_0034057 3300044712 Bacteria 7081
114 Ga0453684_0056881 3300044712 Bacteria 5070
115 Ga0453684_0063748 3300044712 Bacteria 4712
116 Ga0453684_0067819 3300044712 Bacteria 4535
117 Ga0453684_0072518 3300044712 Bacteria 4347
118 Ga0453684_0074636 3300044712 Bacteria 4268
119 Ga0453684_0161308 3300044712 Bacteria 2652
120 Ga0453684_0165997 3300044712 Bacteria 2606
121 Ga0453684_0205364 3300044712 Bacteria 2293
122 Ga0453684_0226007 3300044712 Bacteria 2164
123 Ga0453684_0682312 3300044712 Unclassified 1118
124 Ga0453684_1129191 3300044712 Bacteria 826
125 Ga0453684_1241664 3300044712 Bacteria 780
126 Ga0451576_0000059 3300045051 Bacteria 296795
127 Ga0451576_0000891 3300045051 Bacteria 56758
128 Ga0451576_0013571 3300045051 Bacteria 9109
129 Ga0451576_0025334 3300045051 Bacteria 6391
130 Ga0451576_0057796 3300045051 Bacteria 4054
131 Ga0451576_0095367 3300045051 Bacteria 3094
132 Ga0451576_0133110 3300045051 Bacteria 2592
133 Ga0451576_0210101 3300045051 Bacteria 2032
134 Ga0451576_0329599 3300045051 Bacteria 1598
135 Ga0451576_0916477 3300045051 Unclassified 919
136 Ga0495596_0071454 3300046500 Unclassified 1348
137 Ga0495631_0044644 3300046518 Bacteria 1952
138 Ga0500608_003805 3300053122 Bacteria 5735

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300013308 Ga0157375_10037772 Ga0157375_100377721 190
2 3300003323 rootH1_10077722 rootH1_100777222 191
3 3300025936 Ga0207670_10286184 Ga0207670_102861842 197
4 3300005330 Ga0070690_100090161 Ga0070690_1000901613 203
5 3300005843 Ga0068860_100334134 Ga0068860_1003341342 203
6 3300014326 Ga0157380_10004495 Ga0157380_100044956 203
7 3300025907 Ga0207645_10015710 Ga0207645_100157102 203
8 3300025933 Ga0207706_10027153 Ga0207706_100271534 203
9 3300042876 Ga0451577_0115053 Ga0451577_0115053_1727_2359 204
10 3300042876 Ga0451577_0248760 Ga0451577_0248760_927_1592 211
11 3300045051 Ga0451576_0057796 Ga0451576_0057796_2055_2759 211
12 3300041456 Ga0451795_0249686 Ga0451795_0249686_12_656 212
13 3300041511 Ga0451855_0763811 Ga0451855_0763811_49_693 212
14 3300039093 Ga0400489_25026 Ga0400489_25026_433_1158 214
15 3300036712 Ga0316584_0130840 Ga0316584_0130840_1055_1705 215
16 3300005290 Ga0065712_10004413 Ga0065712_100044134 220
17 3300005328 Ga0070676_10342439 Ga0070676_103424392 220
18 3300005331 Ga0070670_100011115 Ga0070670_1000111158 220
19 3300005334 Ga0068869_100066238 Ga0068869_1000662383 220
20 3300005340 Ga0070689_100140015 Ga0070689_1001400153 220
21 3300005347 Ga0070668_100237542 Ga0070668_1002375422 220
22 3300005353 Ga0070669_100002596 Ga0070669_1000025963 220
23 3300005354 Ga0070675_100149237 Ga0070675_1001492371 220
24 3300005364 Ga0070673_100002159 Ga0070673_10000215912 220
25 3300005441 Ga0070700_100094615 Ga0070700_1000946152 220
26 3300005459 Ga0068867_100015178 Ga0068867_1000151783 220
27 3300005466 Ga0070685_10130774 Ga0070685_101307742 220
28 3300005543 Ga0070672_100185477 Ga0070672_1001854772 220
29 3300005577 Ga0068857_100008243 Ga0068857_1000082432 220
30 3300005578 Ga0068854_100032992 Ga0068854_1000329923 220
31 3300005617 Ga0068859_100013560 Ga0068859_1000135603 220
32 3300005719 Ga0068861_100000424 Ga0068861_1000004248 220
33 3300005840 Ga0068870_10004485 Ga0068870_100044857 220
34 3300005844 Ga0068862_100005101 Ga0068862_1000051017 220
35 3300006881 Ga0068865_100304384 Ga0068865_1003043842 220
36 3300006931 Ga0097620_100013561 Ga0097620_1000135613 220
37 3300009094 Ga0111539_10140936 Ga0111539_101409362 220
38 3300009553 Ga0105249_10005844 Ga0105249_100058449 220
39 3300014745 Ga0157377_10005097 Ga0157377_100050975 220
40 3300025901 Ga0207688_10147862 Ga0207688_101478622 220
41 3300025904 Ga0207647_10104095 Ga0207647_101040953 220
42 3300025908 Ga0207643_10054565 Ga0207643_100545653 220
43 3300025923 Ga0207681_10003840 Ga0207681_100038405 220
44 3300025940 Ga0207691_10191807 Ga0207691_101918072 220
45 3300025942 Ga0207689_10121552 Ga0207689_101215522 220
46 3300025961 Ga0207712_10056675 Ga0207712_100566753 220
47 3300025972 Ga0207668_10315561 Ga0207668_103155611 220
48 3300025981 Ga0207640_10522701 Ga0207640_105227012 220
49 3300026089 Ga0207648_10016291 Ga0207648_100162914 220
50 3300026116 Ga0207674_10014347 Ga0207674_100143473 220
51 3300026118 Ga0207675_100000496 Ga0207675_10000049617 220
52 3300028380 Ga0268265_10008576 Ga0268265_100085762 220
53 iso_pu_bacteria 2890737413 2890737564 222
54 3300003322 rootL2_10344866 rootL2_103448663 223
55 3300044673 Ga0453683_0000755 Ga0453683_0000755_25774_26478 224
56 3300044712 Ga0453684_0063748 Ga0453684_0063748_2010_2714 224
57 3300044712 Ga0453684_0161308 Ga0453684_0161308_1035_1739 224
58 3300045051 Ga0451576_0000891 Ga0451576_0000891_35685_36389 224
59 iso_pu_bacteria 2898713307 2898713370 224
60 3300005339 Ga0070660_100248212 Ga0070660_1002482122 225
61 3300005539 Ga0068853_100103685 Ga0068853_1001036852 225
62 3300005718 Ga0068866_10399416 Ga0068866_103994161 225
63 3300028786 Ga0307517_10022152 Ga0307517_100221527 225
64 3300031344 Ga0265316_10007268 Ga0265316_100072684 225
65 3300041511 Ga0451855_1882010 Ga0451855_1882010_641_1339 225
66 3300042876 Ga0451577_0025295 Ga0451577_0025295_3561_4259 225
67 3300042876 Ga0451577_0506487 Ga0451577_0506487_119_814 225
68 3300044712 Ga0453684_1241664 Ga0453684_1241664_21_722 225
69 3300046500 Ga0495596_0071454 Ga0495596_0071454_434_1120 225
70 3300046518 Ga0495631_0044644 Ga0495631_0044644_959_1645 225
71 3300053122 Ga0500608_003805 Ga0500608_003805_1791_2477 225
72 iso_pu_bacteria 2896317667 2896319587 225
73 3300031344 Ga0265316_10000434 Ga0265316_1000043412 226
74 3300031712 Ga0265342_10172595 Ga0265342_101725952 226
75 3300003316 rootH1_10023546 rootH1_100235467 227
76 3300003322 rootL2_10241030 rootL2_102410302 227
77 3300003323 rootH1_10005039 rootH1_100050393 227
78 3300003323 rootH1_10092053 rootH1_100920532 227
79 3300003323 rootH1_10155982 rootH1_101559821 227
80 3300005614 Ga0068856_100036240 Ga0068856_1000362403 227
81 3300026078 Ga0207702_10034201 Ga0207702_100342013 227
82 3300028794 Ga0307515_10000411 Ga0307515_100004112 227
83 3300031251 Ga0265327_10068657 Ga0265327_100686572 227
84 3300031649 Ga0307514_10125656 Ga0307514_101256562 227
85 3300031691 Ga0316579_10137913 Ga0316579_101379131 227
86 3300031727 Ga0316576_10009003 Ga0316576_100090036 227
87 3300031727 Ga0316576_10085873 Ga0316576_100858733 227
88 3300031727 Ga0316576_10330857 Ga0316576_103308571 227
89 3300031728 Ga0316578_10015476 Ga0316578_100154763 227
90 3300031728 Ga0316578_10094617 Ga0316578_100946172 227
91 3300031728 Ga0316578_10362390 Ga0316578_103623901 227
92 3300031733 Ga0316577_10041956 Ga0316577_100419562 227
93 3300031733 Ga0316577_10112099 Ga0316577_101120992 227
94 3300032139 Ga0316580_10010832 Ga0316580_100108322 227
95 3300035398 Ga0316574_0050905 Ga0316574_0050905_1622_2341 227
96 3300035398 Ga0316574_0056389 Ga0316574_0056389_205_924 227
97 3300036647 Ga0316582_0015497 Ga0316582_0015497_795_1514 227
98 3300036647 Ga0316582_0163113 Ga0316582_0163113_46_765 227
99 3300036712 Ga0316584_0001857 Ga0316584_0001857_11472_12299 227
100 3300036712 Ga0316584_0313483 Ga0316584_0313483_46_765 227
101 3300041494 Ga0451837_1490012 Ga0451837_1490012_211_900 227
102 3300041511 Ga0451855_0542426 Ga0451855_0542426_72_776 227
103 3300041511 Ga0451855_1086141 Ga0451855_1086141_30_719 227
104 3300041511 Ga0451855_1339985 Ga0451855_1339985_507_1196 227
105 3300041511 Ga0451855_1369894 Ga0451855_1369894_267_956 227
106 3300041511 Ga0451855_2012330 Ga0451855_2012330_163_852 227
107 3300042876 Ga0451577_0000048 Ga0451577_0000048_164243_164953 227
108 3300042876 Ga0451577_0061268 Ga0451577_0061268_2471_3178 227
109 3300042876 Ga0451577_0062616 Ga0451577_0062616_1586_2296 227
110 3300042876 Ga0451577_0104754 Ga0451577_0104754_127_828 227
111 3300042876 Ga0451577_0275551 Ga0451577_0275551_144_902 227
112 3300044673 Ga0453683_0000078 Ga0453683_0000078_144425_145135 227
113 3300044673 Ga0453683_0065508 Ga0453683_0065508_765_1481 227
114 3300044673 Ga0453683_0150915 Ga0453683_0150915_128_844 227
115 3300044712 Ga0453684_0000161 Ga0453684_0000161_153041_153751 227
116 3300044712 Ga0453684_0000525 Ga0453684_0000525_22262_22999 227
117 3300044712 Ga0453684_0003254 Ga0453684_0003254_3480_4181 227
118 3300044712 Ga0453684_0005857 Ga0453684_0005857_5234_5947 227
119 3300044712 Ga0453684_0007831 Ga0453684_0007831_8163_8879 227
120 3300044712 Ga0453684_0010835 Ga0453684_0010835_7501_8217 227
121 3300044712 Ga0453684_0012824 Ga0453684_0012824_8476_9177 227
122 3300044712 Ga0453684_0019107 Ga0453684_0019107_3291_3998 227
123 3300044712 Ga0453684_0033163 Ga0453684_0033163_4053_4760 227
124 3300044712 Ga0453684_0034057 Ga0453684_0034057_5176_5883 227
125 3300044712 Ga0453684_0056881 Ga0453684_0056881_1171_1887 227
126 3300044712 Ga0453684_0067819 Ga0453684_0067819_3502_4212 227
127 3300044712 Ga0453684_0072518 Ga0453684_0072518_2695_3405 227
128 3300044712 Ga0453684_0074636 Ga0453684_0074636_474_1175 227
129 3300044712 Ga0453684_0165997 Ga0453684_0165997_920_1627 227
130 3300044712 Ga0453684_0205364 Ga0453684_0205364_380_1087 227
131 3300044712 Ga0453684_0226007 Ga0453684_0226007_1079_1789 227
132 3300044712 Ga0453684_0682312 Ga0453684_0682312_219_977 227
133 3300044712 Ga0453684_1129191 Ga0453684_1129191_69_812 227
134 3300045051 Ga0451576_0000059 Ga0451576_0000059_144425_145135 227
135 3300045051 Ga0451576_0013571 Ga0451576_0013571_6214_6924 227
136 3300045051 Ga0451576_0025334 Ga0451576_0025334_3472_4182 227
137 3300045051 Ga0451576_0095367 Ga0451576_0095367_1762_2469 227
138 3300045051 Ga0451576_0133110 Ga0451576_0133110_1562_2269 227
139 3300045051 Ga0451576_0210101 Ga0451576_0210101_219_977 227
140 3300045051 Ga0451576_0329599 Ga0451576_0329599_51_752 227
141 3300045051 Ga0451576_0916477 Ga0451576_0916477_157_873 227

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00814

TsaD

tRNA N6-adenosine threonylcarbamoyltransferase

64

226

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
2bx2-assembly1.cif.gz_L catalytic domain of e. coli rnase e 0.8947 2 31
5br9-assembly3.cif.gz_E crystal structure of an uncharacterized protein with similarity to peptidase yeaz from pseudomonas aeruginosa 0.8782 1 215
4y0w-assembly1.cif.gz_C-2 yeaz from pseudomonas aeruginosa 0.8755 1 214
5br9-assembly3.cif.gz_E crystal structure of an uncharacterized protein with similarity to peptidase yeaz from pseudomonas aeruginosa 0.8706 1 215
4y0w-assembly1.cif.gz_C-2 yeaz from pseudomonas aeruginosa 0.8679 1 214
ID Description Score Start End Superfamily
af_Q2FWL0_1_92_3.30.420.40 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;ATPase, nucleotide binding domain 0.9598 3 92 3.30.420.40
af_P76256_2_102_3.30.420.40 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;ATPase, nucleotide binding domain 0.9459 3 101 3.30.420.40
5br9C01 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;ATPase, nucleotide binding domain 0.9454 1 94 3.30.420.40
af_Q2FWL0_1_92_3.30.420.40 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;ATPase, nucleotide binding domain 0.9297 3 92 3.30.420.40
af_Q9NPF4_5_132_3.30.420.40 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;ATPase, nucleotide binding domain 0.923 5 95 3.30.420.40
ID Description Score Start End GO Terms
AF-A0A523GDM0-F1-model_v4 tRNA (Adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB 0.9691 1 195 GO:0002949
GO:0005829
GO:0016740
AF-A0A7Y3ELP6-F1-model_v4 tRNA (Adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB 0.9666 3 97 GO:0002949
GO:0005829
GO:0016740
AF-A0A256W517-F1-model_v4 tRNA (Adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB 0.9652 1 91 GO:0002949
GO:0005829
GO:0016740
AF-A0A523GDM0-F1-model_v4 tRNA (Adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB 0.9642 1 195 GO:0002949
GO:0005829
GO:0016740
AF-A0A2E4YNE7-F1-model_v4 tRNA (Adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB 0.9614 1 218 GO:0002949
GO:0005829
GO:0016740

Feature Viewer

pLDDT pTM Quality
91.08 0.88 High
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Predicted Structure (AlphaFold2)

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