F186232

General Info

Members Datasets Scaffolds Average Seq Length
142 113 284 937

Family's Representative Sequence

Representative Sequence 3300031852|Ga0307410_10000017|Ga0307410_1000001726
Length 1096
Sequence MTLKTHSLVGLYAPHAVRPSFAIPVFESNGTLSIQDEDDKGLIRRFTPCDVTQESLIALTGDREVTKVVGEPIYHAFIDSDGRKHIGSREEIAHLLSNARSELENHPFTLLDAASFLKDRELERQAAVVCKEILMRTRIGEDTLKNPRVQEGAFYTPYHAKLFAHELTLQRASDNIEKLASSLSDIRANVTLNPHQVDAALFAFNSPLSRGAILADEVGLGKTIEAGIVLSQKWAERKRHLLVIVPANLRKQWSQELADKFFLPSTILEAKSFNEHIRAGNLNPFDQASVVICSYQFARGKDIYLTKVKWDLVVIDEAHRLRNVYKPTAKIANTLKNALAPFPKILLTATPLQNSLMELYGLVSLIDEHTFGDLASFKEQYARLGAGANYDDLKKRIQPICQRTLRRQVLEYISYTERIAITQPFDPSEDEQRLYELVSDYLQRPALYALPSGQRQLMTLILRRLLASSTYAISGTLDGLAQRLQDSADAIQPVTAPPEGLLENFETVDELLDESASDLPAVRAEIAQLREFAALAKSIIKNSKGECLMAALNKGFAKARELHAPEKAIIFTESTRTQIYLKQVLEAHGFTGKIVLFNGSNNDLDSKATYQAWVERHAGTDRVSGSRTADMRAALVDRFRDEAVIMIATEAAAEGINLQFCSLVINYDLPWNPQRIEQRIGRCHRYGQKYDVVVVNFLNTKNEADQRVYELLSEKFKLFSGVFGASDEVLGAIESGIDFEKRIAGIYQRCRTTEAIQLEFNLLQTEMEAQIEDRMRQTRKQLLENFDQEVTEKLVLRVNQRDQALSRFEETLWRLTRWFLRDHAEFDEGRRHFTLRSDPFSAAEIHHGPYSFGETENTANLYRVGHPLAQRILDECRNLSLPTAHLRFCRAADSPVISVLSSLAGRSGWLRVSRLTLSTLEKVETLVFAGLTDEGTALDAEQCRRLFNLNGETVATNGDFVPPTSALDTLTINSVRTILEESRVRDLRSFEDEMTKLDRWAEDKRAGLKAELRELQDKVNEAKKAARLAANLPDKLRLERERKELEKRYDAAWRKHDEECRTIEQEKDRLLDATEASLAPKTGEWVLFNLRWTLPV

Samples

Sample ID Description Type Environment
1 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
4 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
5 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
6 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
7 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
8 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
9 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
10 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
11 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
12 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
13 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
14 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
15 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
16 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
17 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
18 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
19 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
20 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
21 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
22 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
23 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
24 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
25 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
26 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
27 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
28 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
29 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
40 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
41 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
42 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
43 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
44 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
45 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
46 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
47 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
48 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
49 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
50 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
51 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
52 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
53 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
54 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
55 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
56 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
57 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
58 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
59 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
60 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
61 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
62 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
63 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
64 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
65 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
66 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
67 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
68 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
69 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
70 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
71 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
72 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
73 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
74 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
75 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
76 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
77 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
78 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
79 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
81 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
82 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
83 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
84 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
85 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
86 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
87 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
88 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
89 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
90 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
91 2511231007 Pseudomonas sp. GM18 Isolate Nodule
92 2513237143 Sinorhizobium meliloti Mlalz-1 Isolate Nodule
93 2513237150 Cupriavidus taiwanensis STM6018 Isolate Nodule
94 2513237165 Cupriavidus neocaledonicus STM6070 Isolate Nodule
95 2513237166 Paraburkholderia azotifigens UYPR1.413 Isolate Nodule
96 2791354903 Mangrovibacter phragmitis MP23 Isolate Unclassified
97 2808606357 Arthrobacter sp. SLBN-122 Isolate Unclassified
98 2856328259 Mesorhizobium sp. Primo-B Isolate Nodule
99 2857632687 Micrococcus sp. R-73081 Isolate Unclassified
100 2876399893 Mesorhizobium sp. M7A.F.Ca.AU.002.03.1.1 Isolate Nodule
101 2902682994 Paraburkholderia atlantica CNPSo 3155 Isolate Unclassified
102 2911138879 Spirosoma sp. KUDC1026 Isolate Rhizosphere
103 2924762789 Mesorhizobium sp. WSM4303 Isolate Unclassified
104 2928125067 Methylobacterium sp. 1973 Isolate Unclassified
105 2945956166 Arthrobacter globiformus W2I3 Isolate Rhizosphere
106 2965025482 Mesorhizobium sp. Primo-A Isolate Nodule
107 2967762386 Sinorhizobium meliloti USDA1397 Isolate Nodule
108 2970547951 Mesorhizobium sp. M7A.F.Ca.AU.002.04.1.1 Isolate Nodule
109 644736347 Cupriavidus taiwanensis LMG 19424 Isolate Nodule
110 648028048 Paenibacillus polymyxa E681 Isolate Rhizosphere
111 8004021418 Arthrobacter sp. SDTb3-6 Isolate Rhizosphere
112 8005619151 Rhizobium phaseoli CCGM2 Isolate Unclassified
113 8055693939 Hafnia alvei A23BA Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 83.8
Metatranscriptomes 0
Isolates 16.2

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.41
Nodule 7.75
Rhizoplane 0.7
Rhizosphere 75.35
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307410_10000017 3300031852 Bacteria 69760
2 rootH1_10138696 3300003323 Bacteria 7097
3 Ga0070714_100000616 3300005435 Bacteria 25399
4 Ga0070708_100036430 3300005445 Bacteria 4291
5 Ga0070698_100000548 3300005471 Bacteria 40092
6 Ga0068855_100008506 3300005563 Bacteria 12407
7 Ga0068856_100001954 3300005614 Bacteria 21462
8 Ga0068858_100000011 3300005842 Bacteria 233214
9 Ga0081455_10004310 3300005937 Bacteria 16019
10 Ga0081455_10019775 3300005937 Bacteria 6359
11 Ga0081538_10017783 3300005981 Bacteria 5375
12 Ga0075428_100032554 3300006844 Bacteria 5759
13 Ga0075428_100072519 3300006844 Bacteria 3761
14 Ga0075429_100007527 3300006880 Bacteria 9454
15 Ga0105250_10000541 3300009092 Bacteria 26025
16 Ga0105240_10001672 3300009093 Bacteria 37648
17 Ga0105240_10003465 3300009093 Bacteria 24472
18 Ga0105240_10004585 3300009093 Bacteria 20951
19 Ga0114129_10013933 3300009147 Bacteria 11454
20 Ga0114129_10064701 3300009147 Bacteria 5104
21 Ga0114129_10080623 3300009147 Bacteria 4524
22 Ga0105243_10002752 3300009148 Bacteria 14621
23 Ga0105238_10004971 3300009551 Bacteria 13144
24 Ga0105239_10001150 3300010375 Bacteria 36437
25 Ga0157371_10000703 3300013102 Bacteria 39328
26 Ga0157370_10013715 3300013104 Bacteria 8332
27 Ga0157369_10000356 3300013105 Bacteria 60939
28 Ga0157374_10000061 3300013296 Bacteria 113561
29 Ga0157374_10011308 3300013296 Bacteria 7720
30 Ga0163162_10000187 3300013306 Bacteria 57352
31 Ga0157379_10018040 3300014968 Bacteria 6220
32 Ga0182007_10000843 3300015262 Bacteria 16996
33 Ga0213875_10007550 3300021388 Bacteria 5606
34 Ga0209564_1009176 3300025295 Bacteria 4752
35 Ga0209758_1003507 3300025297 Bacteria 14163
36 Ga0207696_1001611 3300025711 Bacteria 11930
37 Ga0207647_10000140 3300025904 Bacteria 57457
38 Ga0207695_10001152 3300025913 Bacteria 45814
39 Ga0207695_10001549 3300025913 Bacteria 37807
40 Ga0207695_10009195 3300025913 Bacteria 12252
41 Ga0207660_10021166 3300025917 Bacteria 4372
42 Ga0207657_10012536 3300025919 Bacteria 8360
43 Ga0207694_10021897 3300025924 Bacteria 4846
44 Ga0207664_10001055 3300025929 Bacteria 18371
45 Ga0207706_10024875 3300025933 Bacteria 5368
46 Ga0207703_10000004 3300026035 Bacteria 526312
47 Ga0207702_10001777 3300026078 Bacteria 21223
48 Ga0265323_10000746 3300028653 Bacteria 17459
49 Ga0307515_10009106 3300028794 Bacteria 19259
50 Ga0307515_10024039 3300028794 Bacteria 10639
51 Ga0265324_10000712 3300029957 Bacteria 22118
52 Ga0265316_10029352 3300031344 Bacteria 4524
53 Ga0307407_10000102 3300031903 Bacteria 28368
54 Ga0307409_100000007 3300031995 Bacteria 81489
55 Ga0307416_100000270 3300032002 Bacteria 27541
56 Ga0373925_0005342 3300037068 Bacteria 9583
57 Ga0395899_0020242 3300037312 Bacteria 5049
58 Ga0395900_0017856 3300037418 Bacteria 7241
59 Ga0395898_0068181 3300037466 Bacteria 3443
60 Ga0395905_0000033 3300037471 Bacteria 279363
61 Ga0395905_0000791 3300037471 Bacteria 41576
62 Ga0436364_0279031 3300037853 Bacteria 8042
63 Ga0395901_0009312 3300038443 Bacteria 9953
64 Ga0451577_0000032 3300042876 Bacteria 386126
65 Ga0451577_0023452 3300042876 Bacteria 5628
66 Ga0451577_0055337 3300042876 Bacteria 3541
67 Ga0453683_0001918 3300044673 Bacteria 16971
68 Ga0453683_0002205 3300044673 Bacteria 15470
69 Ga0453683_0009484 3300044673 Bacteria 6497
70 Ga0453684_0000028 3300044712 Bacteria 762381
71 Ga0453684_0000744 3300044712 Bacteria 113684
72 Ga0453684_0000911 3300044712 Bacteria 98351
73 Ga0453684_0002694 3300044712 Bacteria 42245
74 Ga0453684_0012777 3300044712 Bacteria 13774
75 Ga0453684_0023443 3300044712 Bacteria 9088
76 Ga0451576_0000104 3300045051 Bacteria 215927
77 Ga0451576_0000287 3300045051 Bacteria 123805
78 Ga0451576_0005418 3300045051 Bacteria 16024
79 Ga0495627_001119 3300046453 Bacteria 17410
80 Ga0495650_0002680 3300046471 Bacteria 13853
81 Ga0495580_0000060 3300046472 Bacteria 64188
82 Ga0495582_0026963 3300046473 Bacteria 3148
83 Ga0495594_0010731 3300046499 Bacteria 4754
84 Ga0495583_0001033 3300046506 Bacteria 31582
85 Ga0495583_0002823 3300046506 Bacteria 14187
86 Ga0495610_0000914 3300046512 Bacteria 27420
87 Ga0495630_0000002 3300046517 Bacteria 1277125
88 Ga0495654_0000180 3300046530 Bacteria 61780
89 Ga0495622_0002278 3300046557 Bacteria 9334
90 Ga0495611_0000394 3300046648 Bacteria 27446
91 Ga0495589_0018290 3300046794 Bacteria 3595
92 Ga0495626_0002127 3300048091 Bacteria 14347
93 Ga0496102_0000140 3300048905 Bacteria 98196
94 Ga0496117_0024196 3300048920 Bacteria 4811
95 Ga0496118_0004988 3300048921 Bacteria 15340
96 Ga0496119_0005684 3300048922 Bacteria 11829
97 Ga0496119_0007376 3300048922 Bacteria 9927
98 Ga0496120_0004401 3300048923 Bacteria 11829
99 Ga0496122_0000311 3300048925 Bacteria 107283
100 Ga0496123_0000118 3300048926 Bacteria 160225
101 Ga0496124_0007275 3300048927 Bacteria 11806
102 Ga0496126_0002307 3300048929 Bacteria 26195
103 Ga0501034_0005994 3300049571 Bacteria 13149
104 Ga0501034_0019716 3300049571 Bacteria 6894
105 Ga0501034_0040807 3300049571 Bacteria 4696
106 Ga0501034_0064874 3300049571 Bacteria 3665
107 Ga0501039_0013713 3300049575 Bacteria 6199
108 Ga0501046_0030283 3300049580 Bacteria 4393
109 Ga0501047_0000165 3300049581 Bacteria 81037
110 Ga0501073_0000347 3300049589 Bacteria 31151
111 Ga0501073_0001266 3300049589 Bacteria 18536
112 Ga0501076_0005553 3300049592 Bacteria 9086
113 Ga0501080_0004923 3300049742 Bacteria 11905
114 Ga0501083_0003540 3300049744 Bacteria 10944
115 Ga0501044_0005876 3300049823 Bacteria 13593
116 Ga0501045_0055207 3300049824 Bacteria 2905
117 nmdc:mga05p37_466_c1 3300050507 Bacteria 44060
118 nmdc:mga05p37_56814_c1 3300050507 Bacteria 4819
119 Ga0501084_0019195 3300054114 Bacteria 5694
120 2511269403 2511231007 Bacteria 6306603
121 2513903546 2513237143 Bacteria 6664116
122 2513957817 2513237150 Bacteria 6553639
123 2514045742 2513237165 Bacteria 6771773
124 2514054381 2513237166 Bacteria 10373764
125 2791922783 2791354903 Bacteria 4937680
126 2808830273 2808606357 Bacteria 4466944
127 2856331496 2856328259 Bacteria 6528202
128 2857633287 2857632687 Bacteria 2448521
129 2876406044 2876399893 Bacteria 6927900
130 2902688958 2902682994 Bacteria 8951596
131 2911140946 2911138879 Bacteria 5811561
132 2924765637 2924762789 Bacteria 6561353
133 2928127368 2928125067 Bacteria 5937560
134 2945957583 2945956166 Bacteria 5110334
135 2965026555 2965025482 Bacteria 6532201
136 2967768820 2967762386 Bacteria 6923502
137 2970552725 2970547951 Bacteria 6931819
138 644750061 644736347 Bacteria 6476522
139 648168744 648028048 Bacteria 5394884
140 8004023365 8004021418 Bacteria 4313954
141 8005623526 8005619151 Bacteria 7030230
142 8055697807 8055693939 Bacteria 4772047
143 Ga0307410_10000017
144 rootH1_10138696
145 Ga0070714_100000616
146 Ga0070708_100036430
147 Ga0070698_100000548
148 Ga0068855_100008506
149 Ga0068856_100001954
150 Ga0068858_100000011
151 Ga0081455_10004310
152 Ga0081455_10019775
153 Ga0081538_10017783
154 Ga0075428_100032554
155 Ga0075428_100072519
156 Ga0075429_100007527
157 Ga0105250_10000541
158 Ga0105240_10001672
159 Ga0105240_10003465
160 Ga0105240_10004585
161 Ga0114129_10013933
162 Ga0114129_10064701
163 Ga0114129_10080623
164 Ga0105243_10002752
165 Ga0105238_10004971
166 Ga0105239_10001150
167 Ga0157371_10000703
168 Ga0157370_10013715
169 Ga0157369_10000356
170 Ga0157374_10000061
171 Ga0157374_10011308
172 Ga0163162_10000187
173 Ga0157379_10018040
174 Ga0182007_10000843
175 Ga0213875_10007550
176 Ga0209564_1009176
177 Ga0209758_1003507
178 Ga0207696_1001611
179 Ga0207647_10000140
180 Ga0207695_10001152
181 Ga0207695_10001549
182 Ga0207695_10009195
183 Ga0207660_10021166
184 Ga0207657_10012536
185 Ga0207694_10021897
186 Ga0207664_10001055
187 Ga0207706_10024875
188 Ga0207703_10000004
189 Ga0207702_10001777
190 Ga0265323_10000746
191 Ga0307515_10009106
192 Ga0307515_10024039
193 Ga0265324_10000712
194 Ga0265316_10029352
195 Ga0307407_10000102
196 Ga0307409_100000007
197 Ga0307416_100000270
198 Ga0373925_0005342
199 Ga0395899_0020242
200 Ga0395900_0017856
201 Ga0395898_0068181
202 Ga0395905_0000033
203 Ga0395905_0000791
204 Ga0436364_0279031
205 Ga0395901_0009312
206 Ga0451577_0000032
207 Ga0451577_0023452
208 Ga0451577_0055337
209 Ga0453683_0001918
210 Ga0453683_0002205
211 Ga0453683_0009484
212 Ga0453684_0000028
213 Ga0453684_0000744
214 Ga0453684_0000911
215 Ga0453684_0002694
216 Ga0453684_0012777
217 Ga0453684_0023443
218 Ga0451576_0000104
219 Ga0451576_0000287
220 Ga0451576_0005418
221 Ga0495627_001119
222 Ga0495650_0002680
223 Ga0495580_0000060
224 Ga0495582_0026963
225 Ga0495594_0010731
226 Ga0495583_0001033
227 Ga0495583_0002823
228 Ga0495610_0000914
229 Ga0495630_0000002
230 Ga0495654_0000180
231 Ga0495622_0002278
232 Ga0495611_0000394
233 Ga0495589_0018290
234 Ga0495626_0002127
235 Ga0496102_0000140
236 Ga0496117_0024196
237 Ga0496118_0004988
238 Ga0496119_0005684
239 Ga0496119_0007376
240 Ga0496120_0004401
241 Ga0496122_0000311
242 Ga0496123_0000118
243 Ga0496124_0007275
244 Ga0496126_0002307
245 Ga0501034_0005994
246 Ga0501034_0019716
247 Ga0501034_0040807
248 Ga0501034_0064874
249 Ga0501039_0013713
250 Ga0501046_0030283
251 Ga0501047_0000165
252 Ga0501073_0000347
253 Ga0501073_0001266
254 Ga0501076_0005553
255 Ga0501080_0004923
256 Ga0501083_0003540
257 Ga0501044_0005876
258 Ga0501045_0055207
259 nmdc:mga05p37_466_c1
260 nmdc:mga05p37_56814_c1
261 Ga0501084_0019195
262 2511269403
263 2513903546
264 2513957817
265 2514045742
266 2514054381
267 2791922783
268 2808830273
269 2856331496
270 2857633287
271 2876406044
272 2902688958
273 2911140946
274 2924765637
275 2928127368
276 2945957583
277 2965026555
278 2967768820
279 2970552725
280 644750061
281 648168744
282 8004023365
283 8005623526
284 8055697807

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00271

Helicase_C

Helicase conserved C-terminal domain

546

687

0.89

PF00176

SNF2-rel_dom

SNF2-related domain

111

468

0.81

PF00270

DEAD

DEAD/DEAH box helicase

195

359

0.75

PF04851

ResIII

Type III restriction enzyme, res subunit

189

353

0.71

Structural Annotation

Top 5 Hits

ID Description Score Start End
2yjt-assembly1.cif.gz_D crystal structure of e. coli dead-box protein srmb bound to regulator of ribonuclease activity a (rraa) 0.8289 384 550
5tnu-assembly2.cif.gz_B s. tokodaii xpb ii crystal structure at 3.0 angstrom resolution 0.8285 33 211
7z7n-assembly1.cif.gz_E mot1e1434q:tbp:dna - substrate recognition state 0.8035 33 244
2p6n-assembly2.cif.gz_B human dead-box rna helicase ddx41, helicase domain 0.7867 383 554
2p6n-assembly1.cif.gz_A human dead-box rna helicase ddx41, helicase domain 0.7592 383 554
ID Description Score Start End Superfamily
af_Q7ZU90_36_251_3.40.50.10810 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Tandem AAA-ATPase domain 0.8412 39 248 3.40.50.10810
af_A4I966_136_383_3.40.50.10810 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Tandem AAA-ATPase domain 0.8409 32 246 3.40.50.10810
af_D3Z9Z9_477_745_3.40.50.10810 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Tandem AAA-ATPase domain 0.8408 34 225 3.40.50.10810
af_K7L475_304_562_3.40.50.10810 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Tandem AAA-ATPase domain 0.8407 37 246 3.40.50.10810
af_Q8IIW0_290_539_3.40.50.10810 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Tandem AAA-ATPase domain 0.8335 32 246 3.40.50.10810
ID Description Score Start End GO Terms
AF-A0A3T1E1V6-F1-model_v4 deleted 0.974 410 537
AF-A0A3T1E1V6-F1-model_v4 deleted 0.9593 410 537
AF-A0A3B0WK12-F1-model_v4 Helicase, SNF2/RAD54 family 0.956 65 247 GO:0004386
GO:0005524
AF-A0A3S2USV5-F1-model_v4 DEAD/DEAH box helicase 0.9473 37 248 GO:0004386
GO:0005524
GO:0016787
AF-Q3YIZ3-F1-model_v4 Snf2/Rad54 family 0.9461 29 248 GO:0005524

Map