F186407

General Info

Members Datasets Scaffolds Average Seq Length
142 101 136 435

Family's Representative Sequence

Representative Sequence 3300037853|Ga0436364_0410392|Ga0436364_0410392_16289_17710
Length 473
Sequence MAASILSEHDVFRKPVPTFRHHALTPYARRPTIAPSTALRRNRTLDDALAEARGTYVARRPKSKAQHEAARTVMPGGNTRTVLYYGPFPICAAKGEGAFLTDIDGHRYLNLLGEYTAGLYGHSHPVIRAAIDNALDHGINFGAHNRMEAELAAIVCARFPSIELVRFTNSGTEANLMALSTARHATGRAKIMVFKGGYHGGLLYFGGGGIPINAPFPVVLARYNDVDGTRAAIRREAAGLAAILVEPMMGSAGCIPAERSFLAMLRAETAAAGSVLIFDEVMTSRFSAGGAQTLDGITPDMTTLGKYIGGGMSFGAFGGRRDLMQIYDPTAAGAMPHAGTFNNNVLSMAAGIAGMAKVFTPDAAAALHARGEALRARLNAVFTDAGVALQMTGRSSLMTLHAVTGPIRSVDDLEGANDAAKELMFLDLLERGYYMARRGFVALSLMVGDADLDGFVTAVKDVVAERADVLPRA

Samples

Sample ID Description Type Environment
1 2842775625 Roseomonas sp. R-71825 Isolate Unclassified
2 2883291878 Hypericibacter terrae R5913 Isolate Rhizosphere
3 2883354860 Hypericibacter adhaerens R5959 Isolate Rhizosphere
4 2929199973 Roseomonas sp. R-73070 Hybrid assembly Isolate Unclassified
5 2960674078 Sinorhizobium meliloti USDA1666 Isolate Nodule
6 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
7 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
8 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
9 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
10 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
11 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
12 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
13 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
14 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
15 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
16 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
17 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
18 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
19 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
20 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
21 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
22 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
23 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
24 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
25 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
26 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
27 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
28 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
29 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
30 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
31 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
32 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
33 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
34 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
41 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
42 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
43 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
44 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
45 3300034816 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_3 Metagenome Rhizosphere
46 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
47 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
48 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
49 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
50 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
51 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
52 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
53 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
54 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
55 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
56 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
57 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
58 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
59 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
60 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
61 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
62 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
63 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
64 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
65 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
66 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
67 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
68 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
69 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
70 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
71 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
72 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
73 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
74 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
75 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
76 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
77 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
78 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
79 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
80 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
81 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
82 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
83 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
84 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
85 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
86 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
87 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
88 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
89 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
90 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
91 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
92 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
93 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
94 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
95 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
96 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
97 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
98 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
99 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
100 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
101 8055909800 Plastoroseomonas hellenica LMG 31523 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 95.77
Metatranscriptomes 0
Isolates 4.23

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.63
Nodule 0.7
Rhizoplane 4.93
Rhizosphere 74.65
Stem 0
Stem Tuber 0
Unclassified 14.08

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070709_10156204 3300005434 Bacteria 1582
2 Ga0070711_100214065 3300005439 Bacteria 1494
3 Ga0070700_100000011 3300005441 Bacteria 173076
4 Ga0070698_100282990 3300005471 Bacteria 1590
5 Ga0068853_100127418 3300005539 Bacteria 2276
6 Ga0070672_100102699 3300005543 Bacteria 2321
7 Ga0070665_100200006 3300005548 Bacteria 1999
8 Ga0068860_100028025 3300005843 Bacteria 5424
9 Ga0081455_10022469 3300005937 Bacteria 5894
10 Ga0081540_1000086 3300005983 Bacteria 99615
11 Ga0075365_10107890 3300006038 Bacteria 1912
12 Ga0070716_100030033 3300006173 Bacteria 2944
13 Ga0075428_100007216 3300006844 Bacteria 12310
14 Ga0075428_100259162 3300006844 Bacteria 1873
15 Ga0075430_100239267 3300006846 Bacteria 1504
16 Ga0075431_100000022 3300006847 Bacteria 81789
17 Ga0075431_100000519 3300006847 Bacteria 32288
18 Ga0075431_100101350 3300006847 Bacteria 2971
19 Ga0075429_100001093 3300006880 Bacteria 21833
20 Ga0105240_10170307 3300009093 Bacteria 2580
21 Ga0111539_10000091 3300009094 Bacteria 94456
22 Ga0111539_10001910 3300009094 Bacteria 27748
23 Ga0111539_10029928 3300009094 Bacteria 6623
24 Ga0114129_10000009 3300009147 Bacteria 149356
25 Ga0114129_10011433 3300009147 Bacteria 12642
26 Ga0114129_10024112 3300009147 Bacteria 8621
27 Ga0114129_10206507 3300009147 Bacteria 2657
28 Ga0114129_10353809 3300009147 Bacteria 1945
29 Ga0105242_10040755 3300009176 Bacteria 3743
30 Ga0157378_10195413 3300013297 Bacteria 1911
31 Ga0157372_10000022 3300013307 Bacteria 206038
32 Ga0157375_10259907 3300013308 Bacteria 1898
33 Ga0213876_10000481 3300021384 Bacteria 31585
34 Ga0213875_10000067 3300021388 Bacteria 127481
35 Ga0213875_10002226 3300021388 Bacteria 11791
36 Ga0213875_10003534 3300021388 Bacteria 8886
37 Ga0209148_1000690 3300025254 Bacteria 27755
38 Ga0209455_1000250 3300025272 Bacteria 64478
39 Ga0209025_1012212 3300025294 Bacteria 5536
40 Ga0207699_10137833 3300025906 Bacteria 1600
41 Ga0207695_10009066 3300025913 Bacteria 12362
42 Ga0207695_10070541 3300025913 Bacteria 3571
43 Ga0207664_10015752 3300025929 Bacteria 5498
44 Ga0207665_10004042 3300025939 Bacteria 9788
45 Ga0207691_10120888 3300025940 Bacteria 2321
46 Ga0207708_10000009 3300026075 Bacteria 235909
47 Ga0207428_10000149 3300027907 Bacteria 95135
48 Ga0207428_10002018 3300027907 Bacteria 20509
49 Ga0316576_10066015 3300031727 Bacteria 2660
50 Ga0307413_10105911 3300031824 Bacteria 1870
51 Ga0307410_10069322 3300031852 Bacteria 2439
52 Ga0307409_100015366 3300031995 Bacteria 5023
53 Ga0373930_0000076 3300034816 Bacteria 9728
54 Ga0373931_0029060 3300035691 Bacteria 2835
55 Ga0395900_0181745 3300037418 Bacteria 2137
56 Ga0436364_0019441 3300037853 Bacteria 19376
57 Ga0436364_0410392 3300037853 Bacteria 19971
58 Ga0436364_0679392 3300037853 Bacteria 26409
59 Ga0436364_1044564 3300037853 Bacteria 9707
60 Ga0400483_050960 3300039062 Unclassified 1654
61 Ga0400483_191155 3300039062 Unclassified 1613
62 Ga0436365_0175744 3300039437 Bacteria 7743
63 Ga0436365_0344945 3300039437 Bacteria 71324
64 Ga0436365_1927852 3300039437 Bacteria 2368
65 Ga0436363_0538490 3300039450 Bacteria 5364
66 Ga0436363_1468980 3300039450 Bacteria 1618
67 Ga0436363_1478795 3300039450 Bacteria 3512
68 Ga0436362_0006781 3300039453 Bacteria 5752
69 Ga0466969_0010158 3300044656 Bacteria 4992
70 Ga0466961_0063426 3300044693 Bacteria 2348
71 Ga0466963_0005680 3300044694 Bacteria 7327
72 Ga0466963_0074247 3300044694 Bacteria 2293
73 Ga0466957_0070169 3300044842 Bacteria 2165
74 Ga0466958_0121419 3300045836 Bacteria 1636
75 Ga0466967_0052252 3300045976 Bacteria 3586
76 Ga0466967_0054381 3300045976 Bacteria 3523
77 Ga0496100_0128711 3300048903 Bacteria 1780
78 Ga0496102_0056299 3300048905 Bacteria 3587
79 Ga0496109_0059412 3300048912 Bacteria 3493
80 Ga0496110_0014331 3300048913 Bacteria 6578
81 Ga0496112_0030606 3300048915 Bacteria 5211
82 Ga0496113_0059571 3300048916 Bacteria 2877
83 Ga0496115_0007580 3300048918 Bacteria 7994
84 Ga0496126_0000430 3300048929 Bacteria 84663
85 Ga0501032_0042139 3300049569 Bacteria 3098
86 Ga0501033_0112253 3300049570 Bacteria 1983
87 Ga0501034_0000856 3300049571 Bacteria 45007
88 Ga0501034_0088034 3300049571 Bacteria 3104
89 Ga0501034_0167856 3300049571 Bacteria 2163
90 Ga0501038_0056624 3300049574 Bacteria 3367
91 Ga0501041_0176011 3300049577 Bacteria 1339
92 Ga0501042_0068564 3300049578 Bacteria 2536
93 Ga0501043_0093508 3300049579 Bacteria 2364
94 Ga0501047_0018959 3300049581 Bacteria 6598
95 Ga0501047_0237573 3300049581 Bacteria 1674
96 Ga0501048_0049538 3300049582 Bacteria 2993
97 Ga0501068_0030832 3300049584 Bacteria 3183
98 Ga0501068_0068186 3300049584 Bacteria 2168
99 Ga0501069_0007516 3300049585 Bacteria 5721
100 Ga0501070_0013874 3300049586 Bacteria 6785
101 Ga0501070_0086630 3300049586 Bacteria 2593
102 Ga0501070_0170639 3300049586 Bacteria 1792
103 Ga0501070_0251538 3300049586 Bacteria 1445
104 Ga0501071_0109353 3300049587 Bacteria 2042
105 Ga0501072_0054574 3300049588 Bacteria 3148
106 Ga0501073_0099303 3300049589 Bacteria 2021
107 Ga0501076_0165709 3300049592 Bacteria 1801
108 Ga0501077_0046316 3300049593 Bacteria 2763
109 Ga0501080_0061359 3300049742 Bacteria 3500
110 Ga0501080_0116613 3300049742 Bacteria 2475
111 Ga0501035_0013535 3300049822 Bacteria 7530
112 Ga0501035_0100440 3300049822 Bacteria 2540
113 Ga0501035_0184395 3300049822 Bacteria 1797
114 Ga0501044_0005353 3300049823 Bacteria 14265
115 Ga0501045_0023550 3300049824 Bacteria 4416
116 nmdc:mga0yw44_28030_c2 3300050492 Bacteria 2922
117 nmdc:mga0yw44_8688_c1 3300050492 Bacteria 5078
118 nmdc:mga05p37_44898_c1 3300050507 Bacteria 5436
119 nmdc:mga05p37_83604_c1 3300050507 Bacteria 3932
120 nmdc:mga05p37_8_c1 3300050507 Bacteria 153982
121 nmdc:mga09592_2051_c1 3300050508 Bacteria 16247
122 nmdc:mga0qj67_243569_c1 3300050509 Unclassified 1459
123 nmdc:mga06r32_116908_c1 3300050510 Bacteria 2628
124 nmdc:mga06r32_193833_c1 3300050510 Bacteria 2019
125 nmdc:mga06r32_425_c1 3300050510 Bacteria 35529
126 nmdc:mga08y16_52587_c1 3300050511 Bacteria 4261
127 nmdc:mga08y16_53_c1 3300050511 Bacteria 103639
128 nmdc:mga08y16_84_c1 3300050511 Bacteria 79627
129 nmdc:mga0n895_92813_c1 3300050512 Bacteria 3022
130 nmdc:mga0a205_17191_c1 3300050515 Bacteria 6775
131 Ga0500642_0016391 3300053130 Bacteria 2813
132 Ga0500568_0005441 3300053139 Bacteria 6578
133 Ga0501082_0096474 3300060353 Bacteria 2556
134 Ga0466962_0063239 3300061719 Bacteria 1767
135 Ga0530510_0037144 3300061734 Bacteria 3511
136 Ga0530510_0087829 3300061734 Bacteria 2265

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300006847 Ga0075431_100000022 Ga0075431_10000002218 391
2 3300006880 Ga0075429_100001093 Ga0075429_1000010938 391
3 3300009094 Ga0111539_10000091 Ga0111539_1000009175 391
4 3300009147 Ga0114129_10000009 Ga0114129_1000000993 391
5 3300027907 Ga0207428_10002018 Ga0207428_1000201817 391
6 3300050507 nmdc:mga05p37_8_c1 nmdc:mga05p37_8_c1_104827_106002 391
7 3300050508 nmdc:mga09592_2051_c1 nmdc:mga09592_2051_c1_14481_15656 391
8 3300050509 nmdc:mga0qj67_243569_c1 nmdc:mga0qj67_243569_c1_148_1323 391
9 3300050510 nmdc:mga06r32_425_c1 nmdc:mga06r32_425_c1_30287_31462 391
10 3300050511 nmdc:mga08y16_84_c1 nmdc:mga08y16_84_c1_16130_17305 391
11 3300061719 Ga0466962_0063239 Ga0466962_0063239_557_1744 393
12 3300049577 Ga0501041_0176011 Ga0501041_0176011_49_1278 394
13 3300021388 Ga0213875_10000067 Ga0213875_1000006730 400
14 3300037853 Ga0436364_1044564 Ga0436364_1044564_4934_6238 406
15 3300031727 Ga0316576_10066015 Ga0316576_100660152 411
16 3300009093 Ga0105240_10170307 Ga0105240_101703072 424
17 3300025913 Ga0207695_10009066 Ga0207695_1000906616 424
18 3300006038 Ga0075365_10107890 Ga0075365_101078902 425
19 3300025913 Ga0207695_10070541 Ga0207695_100705413 425
20 3300050492 nmdc:mga0yw44_28030_c2 nmdc:mga0yw44_28030_c2_510_1787 425
21 3300044694 Ga0466963_0074247 Ga0466963_0074247_830_2110 426
22 3300045836 Ga0466958_0121419 Ga0466958_0121419_193_1473 426
23 3300045976 Ga0466967_0054381 Ga0466967_0054381_209_1489 426
24 3300044694 Ga0466963_0005680 Ga0466963_0005680_1930_3216 427
25 3300049586 Ga0501070_0251538 Ga0501070_0251538_78_1367 429
26 3300045976 Ga0466967_0052252 Ga0466967_0052252_193_1485 430
27 3300050492 nmdc:mga0yw44_8688_c1 nmdc:mga0yw44_8688_c1_956_2248 430
28 iso_pu_bacteria 2960674078 2960679828 430
29 3300013307 Ga0157372_10000022 Ga0157372_1000002257 432
30 3300049584 Ga0501068_0030832 Ga0501068_0030832_295_1593 432
31 3300005441 Ga0070700_100000011 Ga0070700_100000011101 433
32 3300005843 Ga0068860_100028025 Ga0068860_1000280253 433
33 3300025294 Ga0209025_1012212 Ga0209025_10122123 433
34 3300026075 Ga0207708_10000009 Ga0207708_10000009173 433
35 3300044693 Ga0466961_0063426 Ga0466961_0063426_745_2052 433
36 3300044842 Ga0466957_0070169 Ga0466957_0070169_821_2128 433
37 3300049589 Ga0501073_0099303 Ga0501073_0099303_463_1764 433
38 3300006847 Ga0075431_100101350 Ga0075431_1001013502 434
39 3300013297 Ga0157378_10195413 Ga0157378_101954132 434
40 3300049822 Ga0501035_0100440 Ga0501035_0100440_377_1681 434
41 3300050510 nmdc:mga06r32_193833_c1 nmdc:mga06r32_193833_c1_439_1743 434
42 3300006844 Ga0075428_100259162 Ga0075428_1002591622 435
43 3300009094 Ga0111539_10001910 Ga0111539_1000191023 435
44 3300009094 Ga0111539_10029928 Ga0111539_100299282 435
45 3300009147 Ga0114129_10011433 Ga0114129_100114333 435
46 3300009147 Ga0114129_10206507 Ga0114129_102065073 435
47 3300027907 Ga0207428_10000149 Ga0207428_1000014976 435
48 3300031824 Ga0307413_10105911 Ga0307413_101059111 435
49 3300031852 Ga0307410_10069322 Ga0307410_100693222 435
50 3300031995 Ga0307409_100015366 Ga0307409_1000153663 435
51 3300048903 Ga0496100_0128711 Ga0496100_0128711_107_1414 435
52 3300048905 Ga0496102_0056299 Ga0496102_0056299_211_1518 435
53 3300048912 Ga0496109_0059412 Ga0496109_0059412_124_1431 435
54 3300048913 Ga0496110_0014331 Ga0496110_0014331_4162_5469 435
55 3300048915 Ga0496112_0030606 Ga0496112_0030606_1775_3082 435
56 3300048916 Ga0496113_0059571 Ga0496113_0059571_1060_2367 435
57 3300048918 Ga0496115_0007580 Ga0496115_0007580_912_2219 435
58 3300050507 nmdc:mga05p37_44898_c1 nmdc:mga05p37_44898_c1_2703_4010 435
59 3300050511 nmdc:mga08y16_52587_c1 nmdc:mga08y16_52587_c1_2762_4069 435
60 3300050511 nmdc:mga08y16_53_c1 nmdc:mga08y16_53_c1_23778_25085 435
61 3300025254 Ga0209148_1000690 Ga0209148_100069018 436
62 3300025272 Ga0209455_1000250 Ga0209455_10002502 436
63 3300053130 Ga0500642_0016391 Ga0500642_0016391_527_1837 436
64 iso_pu_bacteria 2929199973 2929200257 437
65 iso_pu_bacteria 8055909800 8055912563 437
66 3300005543 Ga0070672_100102699 Ga0070672_1001026992 438
67 3300005983 Ga0081540_1000086 Ga0081540_100008685 438
68 3300021388 Ga0213875_10003534 Ga0213875_100035347 438
69 3300025940 Ga0207691_10120888 Ga0207691_101208882 438
70 3300037853 Ga0436364_0679392 Ga0436364_0679392_402_1730 438
71 3300049574 Ga0501038_0056624 Ga0501038_0056624_591_1907 438
72 3300049578 Ga0501042_0068564 Ga0501042_0068564_1095_2411 438
73 3300049579 Ga0501043_0093508 Ga0501043_0093508_35_1351 438
74 3300049582 Ga0501048_0049538 Ga0501048_0049538_1064_2380 438
75 3300049584 Ga0501068_0068186 Ga0501068_0068186_53_1369 438
76 3300049586 Ga0501070_0170639 Ga0501070_0170639_380_1729 438
77 3300049587 Ga0501071_0109353 Ga0501071_0109353_415_1731 438
78 3300049588 Ga0501072_0054574 Ga0501072_0054574_343_1659 438
79 3300049592 Ga0501076_0165709 Ga0501076_0165709_53_1369 438
80 3300049742 Ga0501080_0061359 Ga0501080_0061359_1923_3239 438
81 3300049822 Ga0501035_0184395 Ga0501035_0184395_184_1500 438
82 3300049824 Ga0501045_0023550 Ga0501045_0023550_1354_2670 438
83 3300060353 Ga0501082_0096474 Ga0501082_0096474_421_1737 438
84 3300061734 Ga0530510_0087829 Ga0530510_0087829_889_2205 438
85 3300005439 Ga0070711_100214065 Ga0070711_1002140651 439
86 3300021384 Ga0213876_10000481 Ga0213876_1000048125 439
87 3300021388 Ga0213875_10002226 Ga0213875_100022268 439
88 3300037853 Ga0436364_0019441 Ga0436364_0019441_14337_15662 439
89 3300039437 Ga0436365_0175744 Ga0436365_0175744_3406_4731 439
90 3300039437 Ga0436365_0344945 Ga0436365_0344945_23222_24547 439
91 3300039450 Ga0436363_0538490 Ga0436363_0538490_1086_2411 439
92 3300039450 Ga0436363_1478795 Ga0436363_1478795_783_2108 439
93 3300039453 Ga0436362_0006781 Ga0436362_0006781_881_2206 439
94 3300049569 Ga0501032_0042139 Ga0501032_0042139_1017_2336 439
95 3300049570 Ga0501033_0112253 Ga0501033_0112253_69_1391 439
96 3300049581 Ga0501047_0018959 Ga0501047_0018959_4185_5504 439
97 3300049581 Ga0501047_0237573 Ga0501047_0237573_294_1616 439
98 3300049585 Ga0501069_0007516 Ga0501069_0007516_2676_3995 439
99 3300049586 Ga0501070_0013874 Ga0501070_0013874_3868_5187 439
100 3300049822 Ga0501035_0013535 Ga0501035_0013535_2332_3651 439
101 3300049823 Ga0501044_0005353 Ga0501044_0005353_3648_4967 439
102 3300006844 Ga0075428_100007216 Ga0075428_1000072169 440
103 3300006846 Ga0075430_100239267 Ga0075430_1002392671 440
104 3300006847 Ga0075431_100000519 Ga0075431_10000051914 440
105 3300009147 Ga0114129_10024112 Ga0114129_100241124 440
106 3300013308 Ga0157375_10259907 Ga0157375_102599072 440
107 3300039437 Ga0436365_1927852 Ga0436365_1927852_19_1344 440
108 3300050510 nmdc:mga06r32_116908_c1 nmdc:mga06r32_116908_c1_492_1814 440
109 3300053139 Ga0500568_0005441 Ga0500568_0005441_5197_6522 440
110 3300049586 Ga0501070_0086630 Ga0501070_0086630_717_2042 441
111 3300050507 nmdc:mga05p37_83604_c1 nmdc:mga05p37_83604_c1_16_1341 441
112 3300005937 Ga0081455_10022469 Ga0081455_100224691 442
113 3300009147 Ga0114129_10353809 Ga0114129_103538092 442
114 3300034816 Ga0373930_0000076 Ga0373930_0000076_2087_3439 442
115 3300039062 Ga0400483_050960 Ga0400483_050960_169_1497 442
116 3300039062 Ga0400483_191155 Ga0400483_191155_271_1599 442
117 3300039450 Ga0436363_1468980 Ga0436363_1468980_36_1370 442
118 3300048929 Ga0496126_0000430 Ga0496126_0000430_53196_54533 442
119 3300049571 Ga0501034_0000856 Ga0501034_0000856_12063_13391 442
120 3300049571 Ga0501034_0088034 Ga0501034_0088034_1439_2779 442
121 3300050512 nmdc:mga0n895_92813_c1 nmdc:mga0n895_92813_c1_1353_2684 442
122 3300050515 nmdc:mga0a205_17191_c1 nmdc:mga0a205_17191_c1_3578_4909 442
123 3300044656 Ga0466969_0010158 Ga0466969_0010158_3249_4625 444
124 iso_pu_bacteria 2883291878 2883294656 444
125 iso_pu_bacteria 2883354860 2883356845 444
126 3300005471 Ga0070698_100282990 Ga0070698_1002829901 445
127 3300005548 Ga0070665_100200006 Ga0070665_1002000062 445
128 3300009176 Ga0105242_10040755 Ga0105242_100407553 445
129 3300025929 Ga0207664_10015752 Ga0207664_100157524 445
130 3300025939 Ga0207665_10004042 Ga0207665_100040425 445
131 iso_pu_bacteria 2842775625 2842776539 445
132 3300006173 Ga0070716_100030033 Ga0070716_1000300331 446
133 3300037853 Ga0436364_0410392 Ga0436364_0410392_16289_17710 446
134 3300049571 Ga0501034_0167856 Ga0501034_0167856_684_2030 448
135 3300049742 Ga0501080_0116613 Ga0501080_0116613_11_1357 448
136 3300035691 Ga0373931_0029060 Ga0373931_0029060_776_2125 449
137 3300037418 Ga0395900_0181745 Ga0395900_0181745_502_1851 449
138 3300049593 Ga0501077_0046316 Ga0501077_0046316_791_2140 449
139 3300061734 Ga0530510_0037144 Ga0530510_0037144_298_1647 449
140 3300005434 Ga0070709_10156204 Ga0070709_101562041 457
141 3300005539 Ga0068853_100127418 Ga0068853_1001274182 457
142 3300025906 Ga0207699_10137833 Ga0207699_101378331 457

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00202

Aminotran_3

Aminotransferase class-III

83

205

0.92

PF00202

Aminotran_3

Aminotransferase class-III

217

463

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
4aoa-assembly1.cif.gz_A biochemical properties and crystal structure of a novel beta- phenylalanine aminotransferase from variovorax paradoxus 0.9789 18 450
6iz9-assembly1.cif.gz_A crystal structure of the apo form of a beta-transaminase from mesorhizobium sp. strain luk 0.971 18 450
6iz9-assembly1.cif.gz_B crystal structure of the apo form of a beta-transaminase from mesorhizobium sp. strain luk 0.9706 18 450
2yku-assembly1.cif.gz_C structural determinants of the beta-selectivity of a bacterial aminotransferase 0.9675 15 450
4aoa-assembly1.cif.gz_A biochemical properties and crystal structure of a novel beta- phenylalanine aminotransferase from variovorax paradoxus 0.9632 18 450
ID Description Score Start End Superfamily
6iz9B02 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9672 98 336 3.40.640.10
4aoaA01 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.9634 18 450 3.90.1150.10
af_O94492_88_328_3.40.640.10 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9561 95 335 3.40.640.10
6iz9B02 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9548 98 336 3.40.640.10
af_O94492_88_328_3.40.640.10 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9522 95 335 3.40.640.10
ID Description Score Start End GO Terms
AF-A0A2S6R4E7-F1-model_v4 Beta-phenylalanine transaminase (EC 2.6.1.-) 0.9817 15 451 GO:0008483
GO:0030170
AF-A0A2P1V4R9-F1-model_v4 deleted 0.9788 18 450
AF-A0A7Y2VLU0-F1-model_v4 Glutamate-1-semialdehyde 2,1-aminomutase (Glutamate-1-semialdehyde aminotransferase) 0.9772 18 454 GO:0008483
GO:0030170
AF-A0A4V4HYB4-F1-model_v4 deleted 0.9766 18 358
AF-A0A6L7JVD0-F1-model_v4 deleted 0.9757 201 456

Feature Viewer

pLDDT pTM Quality
91.69 0.91 High
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Predicted Structure (AlphaFold2)

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