F186437

General Info

Members Datasets Scaffolds Average Seq Length
142 106 140 459

Family's Representative Sequence

Representative Sequence 3300039438|Ga0436360_0306514|Ga0436360_0306514_47_1621
Length 524
Sequence MSESAITAQAPPALPQKLGLFDTTMLVAGAMIGSGIFIVSCDIARDVGSSGWLLLTWILTGVLTVIGALSYAELASMMPQAGGQYVFLREAYSPLWGFLYGWTYFLVIQTGLIAAVAVAFAKYLGVLVPELGTDHILWETEPLNWRIQLPIPWMDDWMTFFKLDKFKISSGQLVAVLLVLLLTAINSFGIEQGRWVQNIFTVAKTLGLVLLIILGLTIAAHADAVQQNFANLWDGITSTKSYFAIEKFAPWTLLAVVLVLSGAMVGPLFSADAWYNVTFIAHEVKDPRRTLPWGLFLGTSMVIVLYILANVAYLTALPLHGEADVPANAPNAAYRRGIDHAKDDRVGTAVLEEVSPNLGVPLMAIIIMISTFGCDNGLILMGARLYYAMARDGLFFQAVGKLNRFAVPASGLWLQALWSIALIFSGSYNDLLDYIVFAALLFYVVTVSAVFVLRRKMPDAPRPYRAWGYPVLPALYIILCTIIMLSLLVAKPVYSWPSFIILLTGIPVYFLWRFINQNRVTASG

Samples

Sample ID Description Type Environment
1 2910245624 Adhaeribacter radiodurans KUDC8001 Isolate Rhizosphere
2 2958512119 Flavobacterium sp. Sd200 Isolate Rhizosphere
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
7 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
8 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
9 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
10 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
11 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
12 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
13 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
14 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
15 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
16 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
17 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
18 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
19 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
20 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
21 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
22 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
23 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
24 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
25 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
26 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
27 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
28 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
29 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
30 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
31 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
32 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
33 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
34 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
35 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
36 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
37 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
38 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
39 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
40 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
41 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
42 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
43 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
44 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
45 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
46 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
47 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
65 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
66 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
67 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
68 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
69 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
70 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
71 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
72 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
73 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
74 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
75 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
76 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
77 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
78 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
79 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
80 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
81 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
82 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
83 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
84 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
85 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
86 3300049521 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E25_B_7_drought Metagenome Rhizosphere
87 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
89 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
90 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
91 3300049651 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F3_A_0_drought Metagenome Rhizosphere
92 3300049654 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_A_0_control Metagenome Rhizosphere
93 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
94 3300049662 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F2_A_2_control Metagenome Rhizosphere
95 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
96 3300049668 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_B_2_drought Metagenome Rhizosphere
97 3300049673 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I13_A_3_drought Metagenome Rhizosphere
98 3300049675 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_A_3_control Metagenome Rhizosphere
99 3300049688 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_A_4_drought Metagenome Rhizosphere
100 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
101 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
102 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
103 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
104 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
105 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
106 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.59
Metatranscriptomes 0
Isolates 1.41

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.41
Nodule 0
Rhizoplane 1.41
Rhizosphere 93.66
Stem 0
Stem Tuber 0
Unclassified 3.52

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootL2_10089866 3300003322 Bacteria 3197
2 rootL2_10115204 3300003322 Bacteria 9378
3 rootH1_10095632 3300003323 Bacteria 14853
4 Ga0070683_100085240 3300005329 Bacteria 2961
5 Ga0068869_100015650 3300005334 Bacteria 5095
6 Ga0068869_100085958 3300005334 Bacteria 2356
7 Ga0070680_100094278 3300005336 Bacteria 2481
8 Ga0068868_100015118 3300005338 Bacteria 5702
9 Ga0070660_100021084 3300005339 Bacteria 4800
10 Ga0070669_100010097 3300005353 Bacteria 6715
11 Ga0070671_100033565 3300005355 Unclassified 4246
12 Ga0070673_100072457 3300005364 Bacteria 2771
13 Ga0070659_100017768 3300005366 Bacteria 5357
14 Ga0070667_100010308 3300005367 Bacteria 7723
15 Ga0070667_100017229 3300005367 Bacteria 5984
16 Ga0070667_100076787 3300005367 Bacteria 2852
17 Ga0070678_100053340 3300005456 Unclassified 2940
18 Ga0070681_10195304 3300005458 Bacteria 1943
19 Ga0068867_100062052 3300005459 Unclassified 2776
20 Ga0070706_100147576 3300005467 Unclassified 2196
21 Ga0070679_100219483 3300005530 Bacteria 1863
22 Ga0068853_100106702 3300005539 Unclassified 2483
23 Ga0070665_100011424 3300005548 Bacteria 8978
24 Ga0068857_100020445 3300005577 Bacteria 5823
25 Ga0068852_100100999 3300005616 Bacteria 2604
26 Ga0068859_100023260 3300005617 Bacteria 6218
27 Ga0068859_100173078 3300005617 Unclassified 2241
28 Ga0068861_100084640 3300005719 Bacteria 2490
29 Ga0068851_10000042 3300005834 Bacteria 88904
30 Ga0068870_10009615 3300005840 Unclassified 4406
31 Ga0068863_100043596 3300005841 Unclassified 4258
32 Ga0068860_100004237 3300005843 Bacteria 14692
33 Ga0068862_100025967 3300005844 Bacteria 4922
34 Ga0097621_100004436 3300006237 Bacteria 9770
35 Ga0068871_100000063 3300006358 Bacteria 58377
36 Ga0075434_100055455 3300006871 Bacteria 3938
37 Ga0068865_100047440 3300006881 Unclassified 2951
38 Ga0097620_100023260 3300006931 Bacteria 6218
39 Ga0097620_100173076 3300006931 Unclassified 2241
40 Ga0105246_10015489 3300011119 Bacteria 4819
41 Ga0157373_10117247 3300013100 Bacteria 1871
42 Ga0157369_10225684 3300013105 Bacteria 1960
43 Ga0157378_10003418 3300013297 Bacteria 14085
44 Ga0157378_10028758 3300013297 Bacteria 4908
45 Ga0157378_10042275 3300013297 Bacteria 4045
46 Ga0157378_10101951 3300013297 Unclassified 2622
47 Ga0157378_10294742 3300013297 Bacteria 1568
48 Ga0163162_10001757 3300013306 Bacteria 20302
49 Ga0163162_10004762 3300013306 Bacteria 13094
50 Ga0163162_10091155 3300013306 Bacteria 3131
51 Ga0163162_10239398 3300013306 Bacteria 1946
52 Ga0157372_10047761 3300013307 Bacteria 4758
53 Ga0157372_10248672 3300013307 Bacteria 2064
54 Ga0157375_10000324 3300013308 Bacteria 42877
55 Ga0157375_10101745 3300013308 Bacteria 2957
56 Ga0157375_10148795 3300013308 Unclassified 2475
57 Ga0163163_10000973 3300014325 Bacteria 24371
58 Ga0157379_10169164 3300014968 Bacteria 1973
59 Ga0157376_10000482 3300014969 Bacteria 25758
60 Ga0163161_10094696 3300017792 Bacteria 2214
61 Ga0207656_10000087 3300025321 Bacteria 34092
62 Ga0207642_10014903 3300025899 Bacteria 2882
63 Ga0207643_10009259 3300025908 Bacteria 5291
64 Ga0207657_10019198 3300025919 Bacteria 6500
65 Ga0207681_10109605 3300025923 Bacteria 2006
66 Ga0207690_10028658 3300025932 Unclassified 3531
67 Ga0207691_10007169 3300025940 Bacteria 10754
68 Ga0207689_10005785 3300025942 Bacteria 10979
69 Ga0207689_10028065 3300025942 Bacteria 4708
70 Ga0207689_10051369 3300025942 Bacteria 3399
71 Ga0207712_10170110 3300025961 Bacteria 1702
72 Ga0207668_10025827 3300025972 Bacteria 3806
73 Ga0207658_10008490 3300025986 Bacteria 6990
74 Ga0207658_10074123 3300025986 Bacteria 2586
75 Ga0207641_10036555 3300026088 Unclassified 4101
76 Ga0207648_10003655 3300026089 Bacteria 16101
77 Ga0207648_10025642 3300026089 Bacteria 5248
78 Ga0207676_10240490 3300026095 Bacteria 1624
79 Ga0207674_10044522 3300026116 Unclassified 4571
80 Ga0207683_10070484 3300026121 Unclassified 3088
81 Ga0268264_10007164 3300028381 Bacteria 9344
82 Ga0265338_10004393 3300028800 Bacteria 19070
83 Ga0265339_10012236 3300031249 Bacteria 5247
84 Ga0265316_10067073 3300031344 Unclassified 2775
85 Ga0307408_100001434 3300031548 Bacteria 17737
86 Ga0316578_10011056 3300031728 Bacteria 4705
87 Ga0307413_10088617 3300031824 Bacteria 2008
88 Ga0307414_10025032 3300032004 Unclassified 3815
89 Ga0307414_10026338 3300032004 Bacteria 3741
90 Ga0395905_0000288 3300037471 Bacteria 73714
91 Ga0395905_0021711 3300037471 Bacteria 6072
92 Ga0395905_0035604 3300037471 Bacteria 4675
93 Ga0436365_0199165 3300039437 Bacteria 1541
94 Ga0436365_1133037 3300039437 Bacteria 24803
95 Ga0436360_0306514 3300039438 Bacteria 2160
96 Ga0451577_0021972 3300042876 Bacteria 5831
97 Ga0451577_0022836 3300042876 Bacteria 5710
98 Ga0451577_0073416 3300042876 Bacteria 3052
99 Ga0451577_0110309 3300042876 Bacteria 2461
100 Ga0453683_0037820 3300044673 Bacteria 3035
101 Ga0453684_0000932 3300044712 Bacteria 96735
102 Ga0453684_0069658 3300044712 Bacteria 4460
103 Ga0453684_0073520 3300044712 Bacteria 4308
104 Ga0453684_0207428 3300044712 Bacteria 2280
105 Ga0453684_0213370 3300044712 Bacteria 2242
106 Ga0466959_0101184 3300045049 Bacteria 2063
107 Ga0451576_0000339 3300045051 Bacteria 112422
108 Ga0451576_0001619 3300045051 Bacteria 37784
109 Ga0451576_0060902 3300045051 Bacteria 3936
110 Ga0451576_0170223 3300045051 Bacteria 2273
111 Ga0451576_0191067 3300045051 Unclassified 2139
112 Ga0451576_0307275 3300045051 Bacteria 1659
113 Ga0495627_004735 3300046453 Bacteria 5622
114 Ga0495643_0001209 3300046522 Bacteria 25027
115 Ga0495659_0046266 3300046664 Bacteria 1570
116 Ga0495636_0029092 3300047318 Bacteria 2254
117 Ga0495674_0129585 3300047319 Bacteria 2126
118 Ga0496101_0006332 3300048904 Bacteria 7617
119 Ga0496106_0102945 3300048909 Unclassified 2215
120 Ga0501298_000639 3300049521 Bacteria 4823
121 Ga0501031_0013518 3300049568 Bacteria 5320
122 Ga0501036_0029094 3300049572 Unclassified 4670
123 Ga0501037_0056245 3300049573 Bacteria 2874
124 Ga0501039_0022777 3300049575 Bacteria 4804
125 Ga0501201_000437 3300049651 Bacteria 3840
126 Ga0501207_000182 3300049654 Bacteria 6070
127 Ga0501217_002593 3300049661 Bacteria 3577
128 Ga0501222_000711 3300049662 Bacteria 4857
129 Ga0501223_000735 3300049663 Bacteria 7803
130 Ga0501233_002739 3300049668 Bacteria 3124
131 Ga0501240_000633 3300049673 Bacteria 3005
132 Ga0501243_000836 3300049675 Bacteria 4290
133 Ga0501259_005044 3300049688 Bacteria 2092
134 Ga0501080_0187796 3300049742 Bacteria 1900
135 Ga0501035_0027229 3300049822 Bacteria 5225
136 Ga0501044_0010337 3300049823 Bacteria 10132
137 nmdc:mga05p37_5989_c1 3300050507 Bacteria 14313
138 nmdc:mga0a205_101228_c1 3300050515 Bacteria 2780
139 Ga0500616_0028666 3300053153 Bacteria 3067
140 Ga0500622_0002276 3300053156 Bacteria 14091

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300013297 Ga0157378_10101951 Ga0157378_101019511 363
2 3300045051 Ga0451576_0307275 Ga0451576_0307275_48_1394 384
3 3300005336 Ga0070680_100094278 Ga0070680_1000942781 387
4 3300005339 Ga0070660_100021084 Ga0070660_1000210842 387
5 3300005366 Ga0070659_100017768 Ga0070659_1000177682 387
6 3300005458 Ga0070681_10195304 Ga0070681_101953042 387
7 3300005530 Ga0070679_100219483 Ga0070679_1002194832 387
8 3300005577 Ga0068857_100020445 Ga0068857_1000204454 387
9 3300025919 Ga0207657_10019198 Ga0207657_100191984 387
10 3300025932 Ga0207690_10028658 Ga0207690_100286582 387
11 3300026116 Ga0207674_10044522 Ga0207674_100445222 387
12 3300044712 Ga0453684_0073520 Ga0453684_0073520_2139_3542 395
13 3300045051 Ga0451576_0191067 Ga0451576_0191067_79_1482 395
14 3300025961 Ga0207712_10170110 Ga0207712_101701101 409
15 3300049673 Ga0501240_000633 Ga0501240_000633_925_2352 409
16 3300046664 Ga0495659_0046266 Ga0495659_0046266_10_1434 410
17 3300028800 Ga0265338_10004393 Ga0265338_100043939 411
18 3300031249 Ga0265339_10012236 Ga0265339_100122362 411
19 3300031344 Ga0265316_10067073 Ga0265316_100670731 411
20 3300042876 Ga0451577_0022836 Ga0451577_0022836_2457_3842 413
21 3300044712 Ga0453684_0000932 Ga0453684_0000932_22499_23884 413
22 3300044712 Ga0453684_0213370 Ga0453684_0213370_217_1653 413
23 3300045051 Ga0451576_0000339 Ga0451576_0000339_97033_98418 413
24 3300014325 Ga0163163_10000973 Ga0163163_1000097320 414
25 3300046453 Ga0495627_004735 Ga0495627_004735_2999_4417 414
26 3300005334 Ga0068869_100085958 Ga0068869_1000859582 416
27 3300005338 Ga0068868_100015118 Ga0068868_1000151182 416
28 3300005353 Ga0070669_100010097 Ga0070669_1000100976 416
29 3300005364 Ga0070673_100072457 Ga0070673_1000724572 416
30 3300005367 Ga0070667_100017229 Ga0070667_1000172294 416
31 3300005456 Ga0070678_100053340 Ga0070678_1000533402 416
32 3300005539 Ga0068853_100106702 Ga0068853_1001067022 416
33 3300005548 Ga0070665_100011424 Ga0070665_1000114243 416
34 3300005617 Ga0068859_100173078 Ga0068859_1001730782 416
35 3300005719 Ga0068861_100084640 Ga0068861_1000846401 416
36 3300005840 Ga0068870_10009615 Ga0068870_100096154 416
37 3300006881 Ga0068865_100047440 Ga0068865_1000474403 416
38 3300006931 Ga0097620_100173076 Ga0097620_1001730762 416
39 3300011119 Ga0105246_10015489 Ga0105246_100154892 416
40 3300013297 Ga0157378_10042275 Ga0157378_100422755 416
41 3300013308 Ga0157375_10148795 Ga0157375_101487952 416
42 3300014968 Ga0157379_10169164 Ga0157379_101691642 416
43 3300025899 Ga0207642_10014903 Ga0207642_100149033 416
44 3300025908 Ga0207643_10009259 Ga0207643_100092592 416
45 3300025923 Ga0207681_10109605 Ga0207681_101096052 416
46 3300025940 Ga0207691_10007169 Ga0207691_1000716912 416
47 3300025942 Ga0207689_10028065 Ga0207689_100280653 416
48 3300025972 Ga0207668_10025827 Ga0207668_100258271 416
49 3300026089 Ga0207648_10003655 Ga0207648_100036557 416
50 3300026121 Ga0207683_10070484 Ga0207683_100704842 416
51 3300049572 Ga0501036_0029094 Ga0501036_0029094_364_1752 416
52 3300045051 Ga0451576_0060902 Ga0451576_0060902_462_1865 417
53 3300005355 Ga0070671_100033565 Ga0070671_1000335653 419
54 3300005367 Ga0070667_100010308 Ga0070667_1000103084 419
55 3300005841 Ga0068863_100043596 Ga0068863_1000435963 419
56 3300006237 Ga0097621_100004436 Ga0097621_1000044364 419
57 3300006358 Ga0068871_100000063 Ga0068871_10000006311 419
58 3300013297 Ga0157378_10003418 Ga0157378_100034187 419
59 3300013306 Ga0163162_10001757 Ga0163162_1000175713 419
60 3300013308 Ga0157375_10000324 Ga0157375_1000032416 419
61 3300014969 Ga0157376_10000482 Ga0157376_1000048217 419
62 3300025986 Ga0207658_10008490 Ga0207658_100084905 419
63 3300026088 Ga0207641_10036555 Ga0207641_100365553 419
64 3300042876 Ga0451577_0021972 Ga0451577_0021972_3002_4405 419
65 3300044712 Ga0453684_0069658 Ga0453684_0069658_917_2320 419
66 3300048904 Ga0496101_0006332 Ga0496101_0006332_4886_6280 419
67 3300048909 Ga0496106_0102945 Ga0496106_0102945_146_1540 419
68 3300005459 Ga0068867_100062052 Ga0068867_1000620522 420
69 3300025942 Ga0207689_10005785 Ga0207689_100057851 420
70 3300026089 Ga0207648_10025642 Ga0207648_100256425 420
71 3300032004 Ga0307414_10025032 Ga0307414_100250322 420
72 3300031824 Ga0307413_10088617 Ga0307413_100886171 421
73 3300032004 Ga0307414_10026338 Ga0307414_100263382 421
74 3300042876 Ga0451577_0110309 Ga0451577_0110309_700_2151 421
75 3300049568 Ga0501031_0013518 Ga0501031_0013518_3606_5009 421
76 3300049573 Ga0501037_0056245 Ga0501037_0056245_55_1458 421
77 3300049575 Ga0501039_0022777 Ga0501039_0022777_1425_2828 421
78 3300049822 Ga0501035_0027229 Ga0501035_0027229_1879_3282 421
79 3300049823 Ga0501044_0010337 Ga0501044_0010337_6428_7831 421
80 3300053153 Ga0500616_0028666 Ga0500616_0028666_1198_2616 421
81 3300013306 Ga0163162_10004762 Ga0163162_1000476210 422
82 3300013308 Ga0157375_10101745 Ga0157375_101017452 422
83 3300017792 Ga0163161_10094696 Ga0163161_100946963 422
84 3300049742 Ga0501080_0187796 Ga0501080_0187796_465_1847 423
85 3300050507 nmdc:mga05p37_5989_c1 nmdc:mga05p37_5989_c1_12004_13530 423
86 3300013297 Ga0157378_10294742 Ga0157378_102947421 424
87 3300028381 Ga0268264_10007164 Ga0268264_100071644 424
88 3300039437 Ga0436365_0199165 Ga0436365_0199165_34_1419 424
89 3300039437 Ga0436365_1133037 Ga0436365_1133037_9626_11011 424
90 3300047319 Ga0495674_0129585 Ga0495674_0129585_210_1595 424
91 3300003323 rootH1_10095632 rootH1_100956327 425
92 3300013100 Ga0157373_10117247 Ga0157373_101172473 425
93 3300013307 Ga0157372_10047761 Ga0157372_100477615 425
94 3300005616 Ga0068852_100100999 Ga0068852_1001009992 426
95 3300013306 Ga0163162_10239398 Ga0163162_102393982 426
96 3300042876 Ga0451577_0073416 Ga0451577_0073416_1011_2435 426
97 3300045051 Ga0451576_0001619 Ga0451576_0001619_16877_18301 426
98 3300005329 Ga0070683_100085240 Ga0070683_1000852404 427
99 3300013297 Ga0157378_10028758 Ga0157378_100287584 427
100 3300013306 Ga0163162_10091155 Ga0163162_100911551 427
101 3300013307 Ga0157372_10248672 Ga0157372_102486722 427
102 3300053156 Ga0500622_0002276 Ga0500622_0002276_2507_3943 427
103 3300006871 Ga0075434_100055455 Ga0075434_1000554553 428
104 3300045049 Ga0466959_0101184 Ga0466959_0101184_99_1496 428
105 3300050515 nmdc:mga0a205_101228_c1 nmdc:mga0a205_101228_c1_1283_2707 428
106 3300031728 Ga0316578_10011056 Ga0316578_100110563 429
107 3300044712 Ga0453684_0207428 Ga0453684_0207428_678_2129 429
108 3300047318 Ga0495636_0029092 Ga0495636_0029092_586_2010 429
109 3300005834 Ga0068851_10000042 Ga0068851_100000426 430
110 3300025321 Ga0207656_10000087 Ga0207656_100000876 430
111 3300037471 Ga0395905_0021711 Ga0395905_0021711_2522_3973 430
112 3300005334 Ga0068869_100015650 Ga0068869_1000156503 431
113 3300005367 Ga0070667_100076787 Ga0070667_1000767872 431
114 3300005617 Ga0068859_100023260 Ga0068859_1000232604 431
115 3300005843 Ga0068860_100004237 Ga0068860_10000423711 431
116 3300005844 Ga0068862_100025967 Ga0068862_1000259674 431
117 3300006931 Ga0097620_100023260 Ga0097620_1000232604 431
118 3300013105 Ga0157369_10225684 Ga0157369_102256842 431
119 3300025942 Ga0207689_10051369 Ga0207689_100513692 431
120 3300025986 Ga0207658_10074123 Ga0207658_100741232 431
121 3300026095 Ga0207676_10240490 Ga0207676_102404902 431
122 3300045051 Ga0451576_0170223 Ga0451576_0170223_424_1845 431
123 3300049521 Ga0501298_000639 Ga0501298_000639_2224_3627 431
124 3300049651 Ga0501201_000437 Ga0501201_000437_1517_2920 431
125 3300049654 Ga0501207_000182 Ga0501207_000182_3221_4624 431
126 3300049661 Ga0501217_002593 Ga0501217_002593_1285_2688 431
127 3300049662 Ga0501222_000711 Ga0501222_000711_42_1445 431
128 3300049663 Ga0501223_000735 Ga0501223_000735_1147_2550 431
129 3300049668 Ga0501233_002739 Ga0501233_002739_798_2201 431
130 3300049675 Ga0501243_000836 Ga0501243_000836_2496_3899 431
131 3300049688 Ga0501259_005044 Ga0501259_005044_614_2017 431
132 3300037471 Ga0395905_0035604 Ga0395905_0035604_2030_3505 432
133 iso_pu_bacteria 2910245624 2910246946 432
134 3300046522 Ga0495643_0001209 Ga0495643_0001209_5865_7388 436
135 iso_pu_bacteria 2958512119 2958515223 439
136 3300031548 Ga0307408_100001434 Ga0307408_10000143411 449
137 3300037471 Ga0395905_0000288 Ga0395905_0000288_68912_70351 450
138 3300044673 Ga0453683_0037820 Ga0453683_0037820_225_1691 453
139 3300003322 rootL2_10115204 rootL2_101152046 455
140 3300005467 Ga0070706_100147576 Ga0070706_1001475762 457
141 3300039438 Ga0436360_0306514 Ga0436360_0306514_47_1621 461
142 3300003322 rootL2_10089866 rootL2_100898662 468

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00324

AA_permease

Amino acid permease

22

520

0.88

PF13520

AA_permease_2

Amino acid permease

18

511

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
5j4i-assembly1.cif.gz_A crystal structure of the l-arginine/agmatine antiporter from e. coli at 2.2 angstroem resolution 0.801 2 455
7dsk-assembly1.cif.gz_B overall structure of the lat1-4f2hc bound with jx-075 0.7997 2 467
3ob6-assembly1.cif.gz_A structure of adic(n101a) in the open-to-out arg+ bound conformation 0.7926 2 456
6f2g-assembly1.cif.gz_A bacterial asc transporter crystal structure in open to in conformation 0.7836 3 457
3ob6-assembly1.cif.gz_B structure of adic(n101a) in the open-to-out arg+ bound conformation 0.7833 2 456
ID Description Score Start End Superfamily
af_Q19151_16_462_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.8674 2 455 1.20.1740.10
af_Q6AYR7_4_443_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.8594 2 458 1.20.1740.10
af_Q5RKI7_10_447_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.8539 2 454 1.20.1740.10
af_P45539_5_443_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.8536 2 455 1.20.1740.10
af_Q2FYJ4_6_440_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.842 2 455 1.20.1740.10
ID Description Score Start End GO Terms
AF-A0A7W0GQH4-F1-model_v4 APC family permease 0.9033 107 452 GO:0005886
GO:0015179
AF-A0A1E4B8V9-F1-model_v4 Amino acid permease 0.8917 2 452 GO:0005886
GO:0022857
AF-A0A381YVY0-F1-model_v4 Amino acid permease/ SLC12A domain-containing protein 0.8844 2 459 GO:0005886
GO:0015179
AF-A0A7W0GQH4-F1-model_v4 APC family permease 0.884 107 452 GO:0005886
GO:0015179
AF-A0A2V7R3X7-F1-model_v4 Amino acid permease 0.8783 2 455 GO:0005886
GO:0015179

Feature Viewer

pLDDT pTM Quality
83.13 0.83 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map