F186975

General Info

Members Datasets Scaffolds Average Seq Length
142 91 142 496

Family's Representative Sequence

Representative Sequence 3300049583|Ga0501067_0039838|Ga0501067_0039838_831_2456
Length 541
Sequence MSLRPRTRPREGTNRIALAAVGLAVAGAAFVASSGVAGAQELVPDVDTLAKSTNLLWVVIGAVLVIFMQAGFALVETGFCRAKHAAHVVSTNFAIFGLGFVGFFCVGYGLMFGGYSLPLIGMDKAAGGPLIGHGESIFLFKGGFFLTDIVSQGAGGAAALGFFLYMVAFMDTVATIPTGAMAERWKWNSFALWGVFCGAIYYPIFGAWTWGGGWLSQLGNSMDLGYGYVDFAGSGVVHSVGAAAGLAGAIVLGPRIGKFNADKSANTIPGHHIPMAMLGCFILLFGWFGFNAASTFASTDVQFATVATNTAIAGAFGAVISMLYMQMTTGKPDPGMMVNGMLGGLVAITAPCAFVDPWAAALIGSIAGVLAPWAVGFIERRGIDDPVGAIAVHGFCGSFGVLAVGLFGNGLYGAGWNVTTDGKMFDSGKGVMGIFGGDFELGLRQLGAQAIGVLVIWTVIFGIALAFFKIQNKLTKGGIRPSEEMELEGMDMPEMGALAYPEFEPFADSSVIGAGVGGGSPTLEAPVVGYTSPLGTRPETS

Samples

Sample ID Description Type Environment
1 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
2 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
3 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
4 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
5 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
6 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
7 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
8 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
9 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
10 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
11 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
12 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
13 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
14 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
15 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
16 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
17 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
18 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
19 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
20 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
21 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
22 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
23 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
24 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
34 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
36 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
37 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
38 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
39 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
40 3300042993 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z071817_5372 Metagenome Rhizosphere
41 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
42 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
43 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
44 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
45 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
46 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
47 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
48 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
49 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
50 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
51 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
52 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
53 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
54 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
55 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
56 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
57 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
58 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
59 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
60 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
61 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
62 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
63 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
64 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
65 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
66 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
67 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
68 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
69 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
70 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
71 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
72 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
73 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
74 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
75 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
76 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
77 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
78 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
79 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
80 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
81 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
82 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
83 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
84 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
85 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
86 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
87 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
88 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
89 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
90 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
91 3300059504 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 23R_SD_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.3
Metatranscriptomes 0.7
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 20.42
Nodule 0
Rhizoplane 4.23
Rhizosphere 75.35
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070668_100113571 3300005347 Bacteria 2158
2 Ga0070671_100003221 3300005355 Bacteria 12721
3 Ga0068863_100013349 3300005841 Bacteria 7920
4 Ga0068858_100044907 3300005842 Bacteria 4095
5 Ga0068860_100012215 3300005843 Bacteria 8462
6 Ga0081455_10001630 3300005937 Bacteria 27385
7 Ga0081455_10002784 3300005937 Bacteria 20599
8 Ga0081455_10021190 3300005937 Bacteria 6104
9 Ga0081455_10021427 3300005937 Bacteria 6062
10 Ga0081455_10087428 3300005937 Bacteria 2535
11 Ga0081539_10008855 3300005985 Bacteria 8605
12 Ga0075365_10001942 3300006038 Bacteria 9759
13 Ga0075365_10002714 3300006038 Bacteria 8820
14 Ga0075365_10004216 3300006038 Bacteria 7575
15 Ga0075363_100024237 3300006048 Bacteria 3083
16 Ga0075363_100027714 3300006048 Bacteria 2907
17 Ga0075363_100038261 3300006048 Bacteria 2522
18 Ga0075364_10001125 3300006051 Bacteria 14277
19 Ga0075364_10011965 3300006051 Bacteria 5288
20 Ga0075367_10017493 3300006178 Bacteria 3935
21 Ga0075367_10032975 3300006178 Bacteria 2983
22 Ga0068871_100174176 3300006358 Bacteria 1846
23 Ga0075428_100001455 3300006844 Bacteria 25325
24 Ga0075428_100005376 3300006844 Bacteria 14240
25 Ga0075430_100009657 3300006846 Bacteria 8151
26 Ga0075430_100010717 3300006846 Bacteria 7769
27 Ga0075430_100020264 3300006846 Bacteria 5659
28 Ga0075431_100000097 3300006847 Bacteria 54368
29 Ga0075429_100004753 3300006880 Bacteria 11693
30 Ga0075429_100009046 3300006880 Bacteria 8651
31 Ga0075429_100025534 3300006880 Bacteria 5128
32 Ga0075429_100027348 3300006880 Bacteria 4950
33 Ga0075429_100030849 3300006880 Bacteria 4658
34 Ga0075429_100188411 3300006880 Bacteria 1808
35 Ga0111539_10002357 3300009094 Bacteria 25105
36 Ga0114129_10029661 3300009147 Bacteria 7747
37 Ga0114129_10141290 3300009147 Bacteria 3300
38 Ga0105249_10073533 3300009553 Bacteria 3162
39 Ga0163163_10006356 3300014325 Bacteria 10316
40 Ga0157379_10161455 3300014968 Bacteria 2023
41 Ga0157376_10082837 3300014969 Bacteria 2758
42 Ga0163161_10015892 3300017792 Bacteria 5251
43 Ga0207659_10048577 3300025926 Bacteria 3006
44 Ga0207644_10014631 3300025931 Bacteria 5254
45 Ga0207709_10059705 3300025935 Bacteria 2375
46 Ga0207669_10127299 3300025937 Bacteria 1743
47 Ga0207712_10041382 3300025961 Bacteria 3167
48 Ga0207668_10029766 3300025972 Bacteria 3582
49 Ga0207703_10010137 3300026035 Bacteria 7386
50 Ga0207641_10046869 3300026088 Bacteria 3644
51 Ga0207676_10095677 3300026095 Bacteria 2450
52 Ga0207428_10010302 3300027907 Bacteria 8355
53 Ga0268264_10003361 3300028381 Bacteria 13828
54 Ga0307409_100026513 3300031995 Bacteria 4088
55 Ga0316574_0013688 3300035398 Bacteria 4670
56 Ga0373931_0000040 3300035691 Bacteria 72842
57 Ga0439463_001772 3300042016 Bacteria 5612
58 Ga0451577_0005166 3300042876 Bacteria 13424
59 Ga0439440_0003222 3300042993 Bacteria 3131
60 Ga0453683_0000097 3300044673 Bacteria 132392
61 Ga0453684_0003413 3300044712 Bacteria 35884
62 Ga0453684_0065343 3300044712 Bacteria 4640
63 Ga0453684_0066899 3300044712 Bacteria 4573
64 Ga0495651_0037657 3300046462 Bacteria 3766
65 Ga0495621_0011624 3300046539 Bacteria 2729
66 Ga0495657_0005196 3300046675 Bacteria 10310
67 Ga0495647_0033256 3300046681 Bacteria 1926
68 Ga0495658_0020821 3300046683 Bacteria 3449
69 Ga0495672_0002705 3300047320 Bacteria 15904
70 Ga0495675_0025081 3300047444 Bacteria 3803
71 Ga0495602_0121521 3300048088 Bacteria 2100
72 Ga0496102_0019716 3300048905 Bacteria 5944
73 Ga0496104_0116670 3300048907 Bacteria 2562
74 Ga0496110_0008915 3300048913 Bacteria 8086
75 Ga0496111_0051196 3300048914 Bacteria 2981
76 Ga0496114_0003957 3300048917 Bacteria 11433
77 Ga0496114_0046387 3300048917 Bacteria 3611
78 Ga0501033_0001920 3300049570 Bacteria 18095
79 Ga0501034_0000282 3300049571 Bacteria 91445
80 Ga0501034_0003542 3300049571 Bacteria 17737
81 Ga0501034_0016600 3300049571 Bacteria 7549
82 Ga0501034_0050692 3300049571 Bacteria 4186
83 Ga0501034_0207126 3300049571 Bacteria 1917
84 Ga0501037_0001318 3300049573 Bacteria 18213
85 Ga0501043_0004299 3300049579 Bacteria 11595
86 Ga0501046_0017495 3300049580 Bacteria 5980
87 Ga0501047_0042848 3300049581 Bacteria 4372
88 Ga0501047_0054438 3300049581 Bacteria 3870
89 Ga0501067_0039838 3300049583 Bacteria 2609
90 Ga0501068_0000369 3300049584 Bacteria 22681
91 Ga0501068_0003391 3300049584 Bacteria 8566
92 Ga0501069_0002890 3300049585 Bacteria 8818
93 Ga0501071_0001021 3300049587 Bacteria 15425
94 Ga0501072_0002343 3300049588 Bacteria 14214
95 Ga0501072_0081856 3300049588 Bacteria 2559
96 Ga0501073_0000071 3300049589 Bacteria 62958
97 Ga0501073_0003301 3300049589 Bacteria 12121
98 Ga0501074_0002009 3300049590 Bacteria 14021
99 Ga0501074_0012307 3300049590 Bacteria 6218
100 Ga0501076_0019378 3300049592 Bacteria 5201
101 Ga0501077_0005209 3300049593 Bacteria 7899
102 Ga0501079_0005136 3300049741 Bacteria 9730
103 Ga0501079_0186339 3300049741 Bacteria 1620
104 Ga0501080_0004283 3300049742 Bacteria 12668
105 Ga0501080_0026091 3300049742 Bacteria 5428
106 Ga0501080_0210295 3300049742 Bacteria 1783
107 Ga0501083_0002295 3300049744 Bacteria 13092
108 Ga0501083_0054780 3300049744 Bacteria 2675
109 Ga0501083_0065958 3300049744 Bacteria 2411
110 Ga0501044_0000932 3300049823 Bacteria 35145
111 Ga0501044_0003975 3300049823 Bacteria 16560
112 nmdc:mga03683_45634_c1 3300050489 Bacteria 1814
113 nmdc:mga03n38_26039_c1 3300050490 Bacteria 2411
114 nmdc:mga03n38_9489_c1 3300050490 Bacteria 3543
115 nmdc:mga00v17_2601_c1 3300050491 Bacteria 9255
116 nmdc:mga00v17_37157_c1 3300050491 Bacteria 2906
117 nmdc:mga00v17_665_c1 3300050491 Bacteria 18923
118 nmdc:mga0yw44_1398_c1 3300050492 Bacteria 9570
119 nmdc:mga0yw44_2365_c1 3300050492 Bacteria 8005
120 nmdc:mga0yw44_23801_c1 3300050492 Bacteria 3455
121 nmdc:mga0yw44_379_c1 3300050492 Bacteria 15437
122 nmdc:mga06z11_32966_c1 3300050494 Bacteria 2530
123 nmdc:mga06z11_5925_c1 3300050494 Bacteria 4938
124 nmdc:mga04h51_10254_c1 3300050495 Bacteria 2568
125 nmdc:mga09592_6560_c1 3300050508 Bacteria 9474
126 nmdc:mga0qj67_20764_c1 3300050509 Bacteria 5029
127 nmdc:mga0qj67_40970_c1 3300050509 Bacteria 3642
128 nmdc:mga06r32_433_c1 3300050510 Bacteria 35354
129 nmdc:mga06r32_46463_c1 3300050510 Bacteria 4143
130 nmdc:mga08y16_25971_c1 3300050511 Bacteria 6179
131 nmdc:mga08y16_26893_c1 3300050511 Bacteria 6063
132 Ga0495619_0036426 3300053085 Bacteria 3204
133 Ga0500566_0000154 3300053094 Bacteria 35104
134 Ga0500568_0000030 3300053139 Bacteria 159567
135 Ga0500604_0014088 3300053151 Bacteria 2174
136 Ga0500616_0000200 3300053153 Bacteria 97730
137 Ga0500616_0004601 3300053153 Bacteria 9748
138 Ga0500616_0021337 3300053153 Bacteria 3633
139 Ga0501084_0000148 3300054114 Bacteria 53108
140 Ga0501084_0002416 3300054114 Bacteria 15019
141 Ga0501084_0035850 3300054114 Bacteria 4146
142 Ga0587082_002484 3300059504 Bacteria 2086

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300054114 Ga0501084_0035850 Ga0501084_0035850_1453_2850 373
2 3300006048 Ga0075363_100038261 Ga0075363_1000382612 406
3 3300006178 Ga0075367_10017493 Ga0075367_100174933 406
4 3300050494 nmdc:mga06z11_5925_c1 nmdc:mga06z11_5925_c1_1144_2529 406
5 3300050495 nmdc:mga04h51_10254_c1 nmdc:mga04h51_10254_c1_648_2033 406
6 3300006844 Ga0075428_100005376 Ga0075428_10000537615 411
7 3300006846 Ga0075430_100020264 Ga0075430_1000202643 411
8 3300006880 Ga0075429_100030849 Ga0075429_1000308495 411
9 3300009147 Ga0114129_10029661 Ga0114129_100296614 411
10 3300006178 Ga0075367_10032975 Ga0075367_100329752 415
11 3300050494 nmdc:mga06z11_32966_c1 nmdc:mga06z11_32966_c1_555_2177 415
12 3300014325 Ga0163163_10006356 Ga0163163_100063568 417
13 3300048905 Ga0496102_0019716 Ga0496102_0019716_4082_5572 417
14 3300048907 Ga0496104_0116670 Ga0496104_0116670_1060_2550 417
15 3300048913 Ga0496110_0008915 Ga0496110_0008915_2022_3512 417
16 3300048914 Ga0496111_0051196 Ga0496111_0051196_518_2008 417
17 3300048917 Ga0496114_0003957 Ga0496114_0003957_9516_11006 417
18 3300006846 Ga0075430_100009657 Ga0075430_1000096573 428
19 3300006847 Ga0075431_100000097 Ga0075431_1000000974 428
20 3300006880 Ga0075429_100009046 Ga0075429_1000090464 428
21 3300047444 Ga0495675_0025081 Ga0495675_0025081_21_1439 428
22 3300050508 nmdc:mga09592_6560_c1 nmdc:mga09592_6560_c1_1072_2625 428
23 3300050509 nmdc:mga0qj67_20764_c1 nmdc:mga0qj67_20764_c1_2785_4338 428
24 3300050510 nmdc:mga06r32_433_c1 nmdc:mga06r32_433_c1_3887_5440 428
25 3300053151 Ga0500604_0014088 Ga0500604_0014088_558_2126 429
26 3300059504 Ga0587082_002484 Ga0587082_002484_33_1655 429
27 3300005841 Ga0068863_100013349 Ga0068863_1000133497 430
28 3300026088 Ga0207641_10046869 Ga0207641_100468693 430
29 3300050491 nmdc:mga00v17_37157_c1 nmdc:mga00v17_37157_c1_1169_2824 430
30 3300050492 nmdc:mga0yw44_23801_c1 nmdc:mga0yw44_23801_c1_991_2376 431
31 3300035398 Ga0316574_0013688 Ga0316574_0013688_637_2274 436
32 3300044712 Ga0453684_0066899 Ga0453684_0066899_1818_3269 437
33 3300005843 Ga0068860_100012215 Ga0068860_1000122157 438
34 3300006051 Ga0075364_10011965 Ga0075364_100119652 438
35 3300028381 Ga0268264_10003361 Ga0268264_100033613 438
36 3300053153 Ga0500616_0021337 Ga0500616_0021337_2043_3590 438
37 3300014968 Ga0157379_10161455 Ga0157379_101614552 440
38 3300031995 Ga0307409_100026513 Ga0307409_1000265135 440
39 3300049571 Ga0501034_0000282 Ga0501034_0000282_16277_17839 440
40 3300049571 Ga0501034_0050692 Ga0501034_0050692_586_2145 440
41 3300049580 Ga0501046_0017495 Ga0501046_0017495_362_1921 440
42 3300049581 Ga0501047_0042848 Ga0501047_0042848_2532_4091 440
43 3300053085 Ga0495619_0036426 Ga0495619_0036426_104_1645 441
44 3300006038 Ga0075365_10001942 Ga0075365_100019422 442
45 3300006038 Ga0075365_10002714 Ga0075365_100027142 442
46 3300006048 Ga0075363_100024237 Ga0075363_1000242373 442
47 3300006051 Ga0075364_10001125 Ga0075364_100011259 442
48 3300042876 Ga0451577_0005166 Ga0451577_0005166_1631_3295 442
49 3300044673 Ga0453683_0000097 Ga0453683_0000097_46558_48222 442
50 3300044712 Ga0453684_0003413 Ga0453684_0003413_26862_28526 442
51 3300050490 nmdc:mga03n38_9489_c1 nmdc:mga03n38_9489_c1_598_2034 442
52 3300050491 nmdc:mga00v17_2601_c1 nmdc:mga00v17_2601_c1_6143_7579 442
53 3300050492 nmdc:mga0yw44_2365_c1 nmdc:mga0yw44_2365_c1_3694_5280 442
54 3300053139 Ga0500568_0000030 Ga0500568_0000030_54916_56421 445
55 3300046539 Ga0495621_0011624 Ga0495621_0011624_807_2366 446
56 3300005937 Ga0081455_10021427 Ga0081455_100214272 448
57 3300006844 Ga0075428_100001455 Ga0075428_1000014557 448
58 3300006846 Ga0075430_100010717 Ga0075430_1000107177 448
59 3300006880 Ga0075429_100004753 Ga0075429_10000475314 448
60 3300006880 Ga0075429_100188411 Ga0075429_1001884111 448
61 3300035691 Ga0373931_0000040 Ga0373931_0000040_55562_57142 448
62 3300049587 Ga0501071_0001021 Ga0501071_0001021_8109_9731 449
63 3300006048 Ga0075363_100027714 Ga0075363_1000277142 450
64 3300049571 Ga0501034_0016600 Ga0501034_0016600_1161_2765 450
65 3300049741 Ga0501079_0186339 Ga0501079_0186339_50_1594 450
66 3300049742 Ga0501080_0210295 Ga0501080_0210295_16_1578 450
67 3300049744 Ga0501083_0002295 Ga0501083_0002295_9470_11032 450
68 3300050489 nmdc:mga03683_45634_c1 nmdc:mga03683_45634_c1_174_1613 450
69 3300050490 nmdc:mga03n38_26039_c1 nmdc:mga03n38_26039_c1_586_2025 450
70 3300050491 nmdc:mga00v17_665_c1 nmdc:mga00v17_665_c1_12946_14385 450
71 3300050492 nmdc:mga0yw44_1398_c1 nmdc:mga0yw44_1398_c1_3316_4755 450
72 3300005985 Ga0081539_10008855 Ga0081539_100088552 451
73 3300009147 Ga0114129_10141290 Ga0114129_101412904 452
74 3300006880 Ga0075429_100025534 Ga0075429_1000255342 453
75 3300025937 Ga0207669_10127299 Ga0207669_101272992 453
76 3300042016 Ga0439463_001772 Ga0439463_001772_1603_3147 453
77 3300042993 Ga0439440_0003222 Ga0439440_0003222_559_2103 453
78 3300049592 Ga0501076_0019378 Ga0501076_0019378_3510_5027 453
79 3300006358 Ga0068871_100174176 Ga0068871_1001741762 455
80 3300014969 Ga0157376_10082837 Ga0157376_100828373 455
81 3300017792 Ga0163161_10015892 Ga0163161_100158924 455
82 3300025935 Ga0207709_10059705 Ga0207709_100597052 455
83 3300026095 Ga0207676_10095677 Ga0207676_100956772 455
84 3300054114 Ga0501084_0000148 Ga0501084_0000148_28133_29704 455
85 3300006880 Ga0075429_100027348 Ga0075429_1000273483 456
86 3300009094 Ga0111539_10002357 Ga0111539_1000235714 456
87 3300027907 Ga0207428_10010302 Ga0207428_100103024 456
88 3300044712 Ga0453684_0065343 Ga0453684_0065343_2276_3931 456
89 3300048917 Ga0496114_0046387 Ga0496114_0046387_1066_2592 456
90 3300050509 nmdc:mga0qj67_40970_c1 nmdc:mga0qj67_40970_c1_1717_3270 456
91 3300050510 nmdc:mga06r32_46463_c1 nmdc:mga06r32_46463_c1_1589_3142 456
92 3300050511 nmdc:mga08y16_25971_c1 nmdc:mga08y16_25971_c1_1587_3137 456
93 3300050511 nmdc:mga08y16_26893_c1 nmdc:mga08y16_26893_c1_1822_3375 456
94 3300025926 Ga0207659_10048577 Ga0207659_100485773 457
95 3300047320 Ga0495672_0002705 Ga0495672_0002705_10501_12030 457
96 3300049571 Ga0501034_0207126 Ga0501034_0207126_301_1824 457
97 3300053153 Ga0500616_0004601 Ga0500616_0004601_59_1576 457
98 3300005937 Ga0081455_10021190 Ga0081455_100211908 459
99 3300006038 Ga0075365_10004216 Ga0075365_100042162 459
100 3300049570 Ga0501033_0001920 Ga0501033_0001920_3548_5107 459
101 3300049823 Ga0501044_0000932 Ga0501044_0000932_13060_14619 459
102 3300050492 nmdc:mga0yw44_379_c1 nmdc:mga0yw44_379_c1_10665_12257 459
103 3300053094 Ga0500566_0000154 Ga0500566_0000154_29400_30962 459
104 3300005355 Ga0070671_100003221 Ga0070671_1000032212 460
105 3300005842 Ga0068858_100044907 Ga0068858_1000449071 460
106 3300005937 Ga0081455_10001630 Ga0081455_1000163010 460
107 3300005937 Ga0081455_10002784 Ga0081455_100027849 460
108 3300025931 Ga0207644_10014631 Ga0207644_100146316 460
109 3300026035 Ga0207703_10010137 Ga0207703_100101372 460
110 3300046462 Ga0495651_0037657 Ga0495651_0037657_14_1528 460
111 3300046675 Ga0495657_0005196 Ga0495657_0005196_5084_6598 460
112 3300046681 Ga0495647_0033256 Ga0495647_0033256_298_1893 460
113 3300046683 Ga0495658_0020821 Ga0495658_0020821_1267_2862 460
114 3300048088 Ga0495602_0121521 Ga0495602_0121521_27_1541 460
115 3300049571 Ga0501034_0003542 Ga0501034_0003542_10275_11894 460
116 3300049573 Ga0501037_0001318 Ga0501037_0001318_13030_14598 460
117 3300049579 Ga0501043_0004299 Ga0501043_0004299_4654_6222 460
118 3300049581 Ga0501047_0054438 Ga0501047_0054438_1668_3200 460
119 3300049583 Ga0501067_0039838 Ga0501067_0039838_831_2456 460
120 3300049584 Ga0501068_0000369 Ga0501068_0000369_17971_19590 460
121 3300049584 Ga0501068_0003391 Ga0501068_0003391_4389_6011 460
122 3300049585 Ga0501069_0002890 Ga0501069_0002890_2120_3742 460
123 3300049588 Ga0501072_0002343 Ga0501072_0002343_5693_7312 460
124 3300049588 Ga0501072_0081856 Ga0501072_0081856_149_1693 460
125 3300049589 Ga0501073_0000071 Ga0501073_0000071_30331_31950 460
126 3300049589 Ga0501073_0003301 Ga0501073_0003301_5310_6932 460
127 3300049590 Ga0501074_0002009 Ga0501074_0002009_10341_11960 460
128 3300049590 Ga0501074_0012307 Ga0501074_0012307_4470_6038 460
129 3300049593 Ga0501077_0005209 Ga0501077_0005209_6200_7744 460
130 3300049741 Ga0501079_0005136 Ga0501079_0005136_6917_8539 460
131 3300049742 Ga0501080_0004283 Ga0501080_0004283_7757_9376 460
132 3300049742 Ga0501080_0026091 Ga0501080_0026091_2936_4504 460
133 3300049744 Ga0501083_0054780 Ga0501083_0054780_814_2436 460
134 3300049744 Ga0501083_0065958 Ga0501083_0065958_44_1663 460
135 3300049823 Ga0501044_0003975 Ga0501044_0003975_9898_11466 460
136 3300053153 Ga0500616_0000200 Ga0500616_0000200_78943_80448 460
137 3300054114 Ga0501084_0002416 Ga0501084_0002416_5189_6811 460
138 3300005937 Ga0081455_10087428 Ga0081455_100874282 461
139 3300005347 Ga0070668_100113571 Ga0070668_1001135712 466
140 3300009553 Ga0105249_10073533 Ga0105249_100735333 466
141 3300025961 Ga0207712_10041382 Ga0207712_100413822 466
142 3300025972 Ga0207668_10029766 Ga0207668_100297662 466

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00909

Ammonium_transp

Ammonium Transporter Family

56

500

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
6eu6-assembly1.cif.gz_A sensor amt protein 0.899 38 458
6eu6-assembly1.cif.gz_A sensor amt protein 0.8862 38 458
2b2f-assembly1.cif.gz_A ammonium transporter amt-1 from a.fulgidus (native) 0.8859 42 458
2b2f-assembly1.cif.gz_A ammonium transporter amt-1 from a.fulgidus (native) 0.8619 42 458
2npg-assembly1.cif.gz_A an unusual twin-his arrangement in the pore of ammonia channels is essential for substrate conductance 0.8603 40 447
ID Description Score Start End Superfamily
af_Q9BLG3_4_431_1.10.3430.10 Mainly Alpha;Orthogonal Bundle;Ammonium transporter fold;Ammonium transporter AmtB like domains 0.9024 29 458 1.10.3430.10
af_Q9VFA9_21_443_1.10.3430.10 Mainly Alpha;Orthogonal Bundle;Ammonium transporter fold;Ammonium transporter AmtB like domains 0.8979 43 457 1.10.3430.10
af_Q58739_8_419_1.10.3430.10 Mainly Alpha;Orthogonal Bundle;Ammonium transporter fold;Ammonium transporter AmtB like domains 0.8917 36 458 1.10.3430.10
af_Q60366_3_391_1.10.3430.10 Mainly Alpha;Orthogonal Bundle;Ammonium transporter fold;Ammonium transporter AmtB like domains 0.8855 43 456 1.10.3430.10
2b2hA00 Mainly Alpha;Orthogonal Bundle;Ammonium transporter fold;Ammonium transporter AmtB like domains 0.8848 42 458 1.10.3430.10
ID Description Score Start End GO Terms
AF-A0A534V7Y9-F1-model_v4 Ammonium transporter 0.9766 212 390 GO:0008519
GO:0016020
GO:0097272
AF-A0A7V3FWK3-F1-model_v4 Ammonium transporter 0.9755 137 458 GO:0008519
GO:0016020
GO:0097272
AF-A0A6T8NT61-F1-model_v4 Ammonium transporter AmtB-like domain-containing protein 0.9695 205 365 GO:0005886
GO:0008519
GO:0097272
AF-A0A2V6YH32-F1-model_v4 Ammonium transporter 0.9687 200 464 GO:0008519
GO:0016020
GO:0097272
AF-A0A363TNV1-F1-model_v4 Ammonium transporter 0.9639 245 456 GO:0008519
GO:0016020
GO:0097272

Feature Viewer

pLDDT pTM Quality
79.75 0.83 High
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Predicted Structure (AlphaFold2)

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