F187044

General Info

Members Datasets Scaffolds Average Seq Length
142 107 123 478

Family's Representative Sequence

Representative Sequence 3300050005|Ga0501284_00102|Ga0501284_00102_5469_6998
Length 509
Sequence MVSIAQTAWPIRKFYHRIFNDKNVRMQQQDAYLVLDIGTGNVRSAIVTPMGKILGVARADIRYYRDELYPESIYFKPDELWLQLKELTRDALQQAGAVTIRAATTTSQREGIVLIDKSGKAVIGLPNIDHRGREWENQYPDKSRIYQLTGRYPTSLFSAYKLAGIRERRKDIWDGLSFFLSISDWASWELSGIALYEHSQASETLLYDVAAGNWSAELCTIFDIPENILPALSQSGTVAGKVKNSIAGSWGFNPDTLVITGGGDTQMAIKSTSPSVGDVVIVSGTTTPVVKLEGAYITDEKERTWTSRDIVKDRFVFEANAGVTGLNYQRLKEVFYPNEGYEVIERELAESAHKNCVASLGSLIAGETKPVIWGGFVFPVPVSHELSRSSFVWATLMDISFSIAENYKVLAAVSGHDAGYIWACGGGLQSQTLRNLIAAVTGNEVRIRNGFDQASVIGAAMLCNEALGASVQQEEALLESSVATGWDEAVIRKLYEQWKDTREQFRAVS

Samples

Sample ID Description Type Environment
1 2522125168 Dyadobacter beijingensis DSM 21582 Isolate Rhizosphere
2 2738541278 Niastella sp. CF465 Isolate Unclassified
3 2738543023 Pedobacter sp. OK628 Isolate Unclassified
4 2739367663 Pedobacter sp. YR510 Isolate Unclassified
5 2818991444 Filimonas endophytica 3197 Isolate Unclassified
6 2842903701 Olivibacter sp. R-72191 Isolate Unclassified
7 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
8 2883068021 Chitinophaga rhizosphaerae T16R-86 Isolate Rhizosphere
9 2896085136 Chitinophaga alhagiae T22 Isolate Unclassified
10 2896109856 Chitinophaga sp. SYP-B3965 Isolate Rhizosphere
11 2896317667 Sphingobacterium sp. SGR-19 Isolate Rhizosphere
12 2919186247 Pedobacter africanus 2697 Isolate Rhizosphere
13 2919437846 Mucilaginibacter pocheonensis 3262 Isolate Rhizosphere
14 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
15 2939664404 Pedobacter africanus 2990 Isolate Rhizosphere
16 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
17 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
18 3003233435 Sphingobacterium shayense CrR18 Isolate Unclassified
19 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
20 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
21 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
22 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
23 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
24 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
25 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
26 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
27 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
28 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
29 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
30 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
31 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
32 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
33 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
34 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
35 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
36 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
37 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
38 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
39 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
40 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
41 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
42 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
43 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
44 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
45 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
46 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
47 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
48 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
49 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
50 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
51 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
52 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
53 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
55 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
57 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
69 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
70 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
71 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
72 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
73 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
74 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
75 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
76 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
77 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
78 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
79 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
80 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
81 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
82 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
83 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
84 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
85 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
86 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
87 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
88 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
89 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
90 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
91 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
92 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
93 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
94 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
96 3300049703 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control Metagenome Rhizosphere
97 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
98 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
99 3300050005 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E22_A_7_drought Metagenome Rhizosphere
100 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
101 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
102 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
103 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
104 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
105 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
106 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
107 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 86.62
Metatranscriptomes 0
Isolates 13.38

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 17.61
Nodule 0
Rhizoplane 0.7
Rhizosphere 66.2
Stem 0
Stem Tuber 0
Unclassified 15.49

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24739J22299_10014822 3300001989 Bacteria 2835
2 JGI24735J21928_10006083 3300002067 Bacteria 3986
3 rootH2_10206341 3300003320 Bacteria 2618
4 rootH2_10268578 3300003320 Bacteria 2173
5 rootH1_10000252 3300003323 Bacteria 19419
6 rootH1_10196045 3300003323 Bacteria 11742
7 rootH1_10217459 3300003323 Bacteria 2597
8 rootH1_10293029 3300003323 Bacteria 3567
9 JGI25160J50197_1010035 3300003354 Bacteria 3458
10 Ga0055528_1002476 3300003790 Bacteria 9873
11 Ga0055530_10000718 3300003791 Bacteria 27839
12 Ga0055531_10014874 3300003794 Bacteria 3475
13 Ga0065165_1000022 3300005262 Bacteria 253404
14 Ga0065165_1000057 3300005262 Bacteria 185971
15 Ga0070658_10020502 3300005327 Bacteria 5299
16 Ga0070680_100000645 3300005336 Bacteria 24317
17 Ga0070682_100011866 3300005337 Bacteria 4985
18 Ga0070660_100197788 3300005339 Unclassified 1630
19 Ga0070681_10003079 3300005458 Bacteria 15475
20 Ga0070679_100003971 3300005530 Bacteria 13622
21 Ga0070679_100009738 3300005530 Bacteria 9089
22 Ga0068853_100005543 3300005539 Bacteria 9903
23 Ga0068853_100005633 3300005539 Bacteria 9839
24 Ga0070665_100000008 3300005548 Bacteria 606341
25 Ga0068855_100088485 3300005563 Unclassified 3577
26 Ga0068857_100035153 3300005577 Bacteria 4435
27 Ga0068857_100053950 3300005577 Unclassified 3566
28 Ga0068854_100069908 3300005578 Unclassified 2565
29 Ga0068852_100001337 3300005616 Bacteria 16534
30 Ga0075366_10000130 3300006195 Bacteria 31353
31 Ga0075366_10003451 3300006195 Bacteria 8341
32 Ga0105240_10000833 3300009093 Bacteria 55556
33 Ga0105240_10025887 3300009093 Bacteria 7703
34 Ga0105240_10079839 3300009093 Unclassified 4025
35 Ga0114129_10000743 3300009147 Bacteria 41401
36 Ga0105241_10001334 3300009174 Bacteria 18742
37 Ga0105241_10020400 3300009174 Unclassified 4896
38 Ga0105237_10001658 3300009545 Bacteria 28886
39 Ga0105237_10049764 3300009545 Unclassified 4211
40 Ga0105238_10022424 3300009551 Bacteria 6435
41 Ga0105239_10000634 3300010375 Bacteria 50072
42 Ga0105239_10000749 3300010375 Bacteria 46059
43 Ga0157373_10004650 3300013100 Bacteria 10331
44 Ga0157371_10000598 3300013102 Bacteria 42955
45 Ga0157370_10003947 3300013104 Bacteria 17264
46 Ga0157369_10069868 3300013105 Unclassified 3773
47 Ga0157372_10000273 3300013307 Bacteria 57289
48 Ga0157372_10063063 3300013307 Bacteria 4154
49 Ga0209673_1000287 3300025273 Bacteria 94132
50 Ga0209676_1000348 3300025292 Bacteria 87619
51 Ga0209758_1005609 3300025297 Bacteria 9543
52 Ga0209050_1000755 3300025298 Bacteria 46537
53 Ga0207426_1000846 3300025302 Bacteria 32226
54 Ga0209257_1001979 3300025304 Bacteria 22030
55 Ga0207647_10000284 3300025904 Bacteria 41474
56 Ga0207707_10001326 3300025912 Bacteria 23010
57 Ga0207695_10000184 3300025913 Bacteria 181201
58 Ga0207695_10029245 3300025913 Bacteria 6095
59 Ga0207695_10033848 3300025913 Bacteria 5566
60 Ga0207671_10001733 3300025914 Bacteria 24557
61 Ga0207671_10053791 3300025914 Unclassified 2983
62 Ga0207660_10003453 3300025917 Bacteria 10308
63 Ga0207652_10003605 3300025921 Bacteria 12753
64 Ga0207652_10007958 3300025921 Bacteria 8509
65 Ga0207652_10078595 3300025921 Bacteria 2881
66 Ga0207667_10002964 3300025949 Bacteria 21077
67 Ga0207667_10071925 3300025949 Unclassified 3595
68 Ga0207674_10039441 3300026116 Unclassified 4895
69 Ga0207674_10091170 3300026116 Unclassified 3038
70 Ga0207698_10001037 3300026142 Bacteria 16181
71 Ga0207698_10034734 3300026142 Unclassified 3679
72 Ga0268266_10000016 3300028379 Bacteria 629101
73 Ga0307517_10144112 3300028786 Unclassified 1660
74 Ga0307511_10000498 3300030521 Bacteria 42446
75 Ga0316177_1220044 3300030731 Bacteria 12825
76 Ga0316176_1163611 3300030732 Bacteria 6968
77 Ga0316183_1074896 3300030742 Bacteria 6970
78 Ga0316181_1194512 3300030744 Bacteria 7329
79 Ga0307513_10119648 3300031456 Bacteria 2605
80 Ga0307509_10064149 3300031507 Unclassified 3865
81 Ga0307509_10154924 3300031507 Bacteria 2199
82 Ga0307508_10000677 3300031616 Bacteria 40943
83 Ga0307414_10027594 3300032004 Bacteria 3671
84 Ga0307510_10005338 3300033180 Bacteria 15295
85 Ga0439431_0000675 3300041997 Bacteria 7304
86 Ga0466972_0000008 3300044658 Bacteria 264518
87 Ga0466961_0054015 3300044693 Unclassified 2563
88 Ga0466957_0003799 3300044842 Bacteria 8348
89 Ga0466957_0012508 3300044842 Bacteria 4912
90 Ga0495638_0065259 3300046460 Unclassified 2241
91 Ga0495606_0014289 3300046507 Bacteria 6208
92 Ga0495616_0007044 3300046513 Bacteria 6761
93 Ga0495648_0016398 3300046524 Bacteria 5345
94 Ga0495611_0000213 3300046648 Bacteria 40899
95 Ga0495625_0000252 3300046660 Bacteria 83831
96 Ga0495625_0013313 3300046660 Bacteria 6614
97 Ga0495625_0051613 3300046660 Unclassified 2948
98 Ga0495625_0066931 3300046660 Bacteria 2529
99 Ga0495687_000006 3300047443 Bacteria 571936
100 Ga0496115_0140824 3300048918 Bacteria 1990
101 Ga0495678_005998 3300049459 Bacteria 6556
102 Ga0501034_0010091 3300049571 Bacteria 9855
103 Ga0501034_0119462 3300049571 Bacteria 2622
104 Ga0501043_0201487 3300049579 Unclassified 1545
105 Ga0501047_0012008 3300049581 Bacteria 8196
106 Ga0501047_0032404 3300049581 Bacteria 5045
107 Ga0501257_016835 3300049686 Bacteria 1697
108 Ga0501219_000331 3300049703 Bacteria 8166
109 Ga0501225_0000951 3300049705 Bacteria 9057
110 Ga0501044_0020895 3300049823 Bacteria 6989
111 Ga0501284_00102 3300050005 Bacteria 17615
112 nmdc:mga0k408_26_c3 3300050493 Bacteria 31353
113 nmdc:mga0k408_953_c1 3300050493 Bacteria 15866
114 nmdc:mga05p37_7429_c1 3300050507 Bacteria 12929
115 Ga0500578_0032207 3300053086 Bacteria 3370
116 Ga0500644_0012342 3300053088 Unclassified 2359
117 Ga0500644_0019852 3300053088 Unclassified 1990
118 Ga0500646_0014176 3300053090 Bacteria 2068
119 Ga0500583_0000050 3300053092 Bacteria 77416
120 Ga0500583_0001570 3300053092 Bacteria 6614
121 Ga0500583_0002359 3300053092 Bacteria 5657
122 Ga0500622_0000504 3300053156 Bacteria 36236
123 Ga0500622_0031664 3300053156 Bacteria 2775

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049581 Ga0501047_0032404 Ga0501047_0032404_3741_5033 427
2 3300009093 Ga0105240_10000833 Ga0105240_100008338 447
3 3300025913 Ga0207695_10000184 Ga0207695_1000018436 447
4 3300010375 Ga0105239_10000749 Ga0105239_100007498 450
5 3300025949 Ga0207667_10002964 Ga0207667_1000296413 453
6 3300026142 Ga0207698_10034734 Ga0207698_100347342 453
7 3300009093 Ga0105240_10079839 Ga0105240_100798392 458
8 3300005578 Ga0068854_100069908 Ga0068854_1000699082 460
9 3300046460 Ga0495638_0065259 Ga0495638_0065259_95_1531 462
10 3300046524 Ga0495648_0016398 Ga0495648_0016398_1670_3106 462
11 3300053088 Ga0500644_0019852 Ga0500644_0019852_86_1522 462
12 3300053092 Ga0500583_0002359 Ga0500583_0002359_3569_5005 462
13 3300049705 Ga0501225_0000951 Ga0501225_0000951_3543_4985 464
14 3300009545 Ga0105237_10001658 Ga0105237_100016583 466
15 3300025914 Ga0207671_10001733 Ga0207671_1000173319 466
16 3300025913 Ga0207695_10033848 Ga0207695_100338483 470
17 3300005563 Ga0068855_100088485 Ga0068855_1000884852 473
18 3300005577 Ga0068857_100053950 Ga0068857_1000539502 473
19 3300009174 Ga0105241_10020400 Ga0105241_100204004 473
20 3300009545 Ga0105237_10049764 Ga0105237_100497643 473
21 3300025914 Ga0207671_10053791 Ga0207671_100537912 473
22 3300025949 Ga0207667_10071925 Ga0207667_100719252 473
23 3300026116 Ga0207674_10091170 Ga0207674_100911702 473
24 iso_pu_bacteria 2896109856 2896111214 473
25 iso_pu_bacteria 2896085136 2896089225 474
26 3300031507 Ga0307509_10154924 Ga0307509_101549242 475
27 iso_pu_bacteria 2818991444 2819589218 475
28 iso_pu_bacteria 2842903701 2842908004 475
29 3300003323 rootH1_10217459 rootH1_102174592 477
30 3300005539 Ga0068853_100005633 Ga0068853_1000056336 477
31 3300009551 Ga0105238_10022424 Ga0105238_100224245 477
32 3300048918 Ga0496115_0140824 Ga0496115_0140824_286_1719 477
33 iso_pu_bacteria 2522125168 2522547788 477
34 iso_pu_bacteria 2738541278 2738729995 477
35 iso_pu_bacteria 2738543023 2739305207 477
36 iso_pu_bacteria 2852627209 2852630967 477
37 iso_pu_bacteria 2883068021 2883072133 477
38 iso_pu_bacteria 2896317667 2896321452 477
39 iso_pu_bacteria 2919186247 2919189296 477
40 iso_pu_bacteria 2919437846 2919440684 477
41 iso_pu_bacteria 2929177148 2929182196 477
42 iso_pu_bacteria 2939664404 2939666549 477
43 iso_pu_bacteria 2945977869 2945978113 477
44 iso_pu_bacteria 2946013367 2946016025 477
45 iso_pu_bacteria 3003233435 3003236352 477
46 iso_pu_bacteria 8003151029 8003153185 477
47 3300005530 Ga0070679_100003971 Ga0070679_1000039719 478
48 3300005616 Ga0068852_100001337 Ga0068852_1000013374 478
49 3300013307 Ga0157372_10063063 Ga0157372_100630632 478
50 3300025921 Ga0207652_10007958 Ga0207652_100079584 478
51 3300026142 Ga0207698_10001037 Ga0207698_100010377 478
52 3300044693 Ga0466961_0054015 Ga0466961_0054015_228_1673 478
53 3300047443 Ga0495687_000006 Ga0495687_000006_271282_272718 478
54 iso_pu_bacteria 2739367663 2739647269 478
55 3300003320 rootH2_10206341 rootH2_102063412 479
56 3300005336 Ga0070680_100000645 Ga0070680_1000006455 479
57 3300005337 Ga0070682_100011866 Ga0070682_1000118663 479
58 3300005339 Ga0070660_100197788 Ga0070660_1001977881 479
59 3300005530 Ga0070679_100009738 Ga0070679_1000097388 479
60 3300005539 Ga0068853_100005543 Ga0068853_1000055434 479
61 3300009093 Ga0105240_10025887 Ga0105240_100258875 479
62 3300009174 Ga0105241_10001334 Ga0105241_100013344 479
63 3300013104 Ga0157370_10003947 Ga0157370_100039471 479
64 3300013105 Ga0157369_10069868 Ga0157369_100698682 479
65 3300025912 Ga0207707_10001326 Ga0207707_1000132619 479
66 3300025913 Ga0207695_10029245 Ga0207695_100292453 479
67 3300025917 Ga0207660_10003453 Ga0207660_100034537 479
68 3300025921 Ga0207652_10003605 Ga0207652_100036058 479
69 3300025921 Ga0207652_10078595 Ga0207652_100785952 479
70 3300030521 Ga0307511_10000498 Ga0307511_1000049828 479
71 3300030731 Ga0316177_1220044 Ga0316177_12200443 479
72 3300030732 Ga0316176_1163611 Ga0316176_11636114 479
73 3300044842 Ga0466957_0003799 Ga0466957_0003799_6754_8193 479
74 3300046507 Ga0495606_0014289 Ga0495606_0014289_4271_5716 479
75 3300046648 Ga0495611_0000213 Ga0495611_0000213_20484_21929 479
76 3300049571 Ga0501034_0010091 Ga0501034_0010091_2307_3749 479
77 3300049571 Ga0501034_0119462 Ga0501034_0119462_1147_2592 479
78 3300003323 rootH1_10000252 rootH1_1000025212 480
79 3300003323 rootH1_10196045 rootH1_101960453 480
80 3300005548 Ga0070665_100000008 Ga0070665_100000008238 480
81 3300028379 Ga0268266_10000016 Ga0268266_10000016236 480
82 3300030742 Ga0316183_1074896 Ga0316183_10748962 480
83 3300030744 Ga0316181_1194512 Ga0316181_11945124 480
84 3300031456 Ga0307513_10119648 Ga0307513_101196481 480
85 3300031507 Ga0307509_10064149 Ga0307509_100641492 480
86 3300044658 Ga0466972_0000008 Ga0466972_0000008_45894_47336 480
87 3300044842 Ga0466957_0012508 Ga0466957_0012508_1432_2874 480
88 3300046660 Ga0495625_0051613 Ga0495625_0051613_162_1604 480
89 3300049579 Ga0501043_0201487 Ga0501043_0201487_49_1506 480
90 3300049581 Ga0501047_0012008 Ga0501047_0012008_6085_7527 480
91 3300053086 Ga0500578_0032207 Ga0500578_0032207_20_1462 480
92 3300053088 Ga0500644_0012342 Ga0500644_0012342_386_1828 480
93 3300053156 Ga0500622_0000504 Ga0500622_0000504_25780_27225 480
94 3300001989 JGI24739J22299_10014822 JGI24739J22299_100148222 481
95 3300002067 JGI24735J21928_10006083 JGI24735J21928_100060833 481
96 3300003320 rootH2_10268578 rootH2_102685782 481
97 3300003323 rootH1_10293029 rootH1_102930292 481
98 3300003354 JGI25160J50197_1010035 JGI25160J50197_10100352 481
99 3300003790 Ga0055528_1002476 Ga0055528_10024765 481
100 3300003791 Ga0055530_10000718 Ga0055530_1000071810 481
101 3300003794 Ga0055531_10014874 Ga0055531_100148742 481
102 3300005262 Ga0065165_1000022 Ga0065165_1000022132 481
103 3300005262 Ga0065165_1000057 Ga0065165_1000057158 481
104 3300005327 Ga0070658_10020502 Ga0070658_100205022 481
105 3300005458 Ga0070681_10003079 Ga0070681_100030798 481
106 3300005577 Ga0068857_100035153 Ga0068857_1000351533 481
107 3300006195 Ga0075366_10000130 Ga0075366_1000013017 481
108 3300006195 Ga0075366_10003451 Ga0075366_100034514 481
109 3300009147 Ga0114129_10000743 Ga0114129_1000074323 481
110 3300010375 Ga0105239_10000634 Ga0105239_1000063427 481
111 3300013100 Ga0157373_10004650 Ga0157373_100046502 481
112 3300013102 Ga0157371_10000598 Ga0157371_1000059819 481
113 3300013307 Ga0157372_10000273 Ga0157372_1000027316 481
114 3300025273 Ga0209673_1000287 Ga0209673_100028745 481
115 3300025292 Ga0209676_1000348 Ga0209676_100034864 481
116 3300025297 Ga0209758_1005609 Ga0209758_10056092 481
117 3300025298 Ga0209050_1000755 Ga0209050_100075513 481
118 3300025302 Ga0207426_1000846 Ga0207426_10008462 481
119 3300025304 Ga0209257_1001979 Ga0209257_100197911 481
120 3300025904 Ga0207647_10000284 Ga0207647_1000028413 481
121 3300026116 Ga0207674_10039441 Ga0207674_100394414 481
122 3300028786 Ga0307517_10144112 Ga0307517_101441121 481
123 3300031616 Ga0307508_10000677 Ga0307508_100006777 481
124 3300032004 Ga0307414_10027594 Ga0307414_100275943 481
125 3300033180 Ga0307510_10005338 Ga0307510_1000533814 481
126 3300041997 Ga0439431_0000675 Ga0439431_0000675_2577_4022 481
127 3300046513 Ga0495616_0007044 Ga0495616_0007044_950_2398 481
128 3300046660 Ga0495625_0000252 Ga0495625_0000252_45895_47343 481
129 3300046660 Ga0495625_0013313 Ga0495625_0013313_2325_3773 481
130 3300046660 Ga0495625_0066931 Ga0495625_0066931_1042_2490 481
131 3300049459 Ga0495678_005998 Ga0495678_005998_1368_2816 481
132 3300049686 Ga0501257_016835 Ga0501257_016835_66_1520 481
133 3300049703 Ga0501219_000331 Ga0501219_000331_6096_7550 481
134 3300049823 Ga0501044_0020895 Ga0501044_0020895_3464_4909 481
135 3300050005 Ga0501284_00102 Ga0501284_00102_5469_6998 481
136 3300050493 nmdc:mga0k408_26_c3 nmdc:mga0k408_26_c3_15002_16450 481
137 3300050493 nmdc:mga0k408_953_c1 nmdc:mga0k408_953_c1_10923_12371 481
138 3300050507 nmdc:mga05p37_7429_c1 nmdc:mga05p37_7429_c1_11357_12853 481
139 3300053090 Ga0500646_0014176 Ga0500646_0014176_405_1850 481
140 3300053092 Ga0500583_0000050 Ga0500583_0000050_26229_27674 481
141 3300053092 Ga0500583_0001570 Ga0500583_0001570_4059_5504 481
142 3300053156 Ga0500622_0031664 Ga0500622_0031664_1214_2665 481

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00370

FGGY_N

FGGY family of carbohydrate kinases, N-terminal domain

31

270

0.94

PF02782

FGGY_C

FGGY family of carbohydrate kinases, C-terminal domain

372

467

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
5gn5-assembly1.cif.gz_B crystal structure of glycerol kinase from trypanosoma brucei gambiense complexed with cumarin derivative-17 0.8698 2 478
5azi-assembly1.cif.gz_A crystal structure of glycerol kinase from trypanosoma brucei gambiense complexed with 4np 0.8684 4 478
7zjx-assembly1.cif.gz_LG rabbit 80s ribosome programmed with secis and sbp2 0.8639 2 33
5gn5-assembly1.cif.gz_B crystal structure of glycerol kinase from trypanosoma brucei gambiense complexed with cumarin derivative-17 0.8614 2 478
5azi-assembly1.cif.gz_A crystal structure of glycerol kinase from trypanosoma brucei gambiense complexed with 4np 0.8566 4 478
ID Description Score Start End Superfamily
af_P77432_9_255_3.30.420.40 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;ATPase, nucleotide binding domain 0.9514 5 239 3.30.420.40
af_P37677_1_241_3.30.420.40 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;ATPase, nucleotide binding domain 0.9368 4 237 3.30.420.40
af_P11553_2_245_3.30.420.40 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;ATPase, nucleotide binding domain 0.9191 4 241 3.30.420.40
af_P37677_1_241_3.30.420.40 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;ATPase, nucleotide binding domain 0.9069 4 237 3.30.420.40
af_Q2G205_1_247_3.30.420.40 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;ATPase, nucleotide binding domain 0.906 5 245 3.30.420.40
ID Description Score Start End GO Terms
AF-A0A0F5I3X2-F1-model_v4 Carbohydrate kinase FGGY N-terminal domain-containing protein 0.9815 4 477 GO:0005975
GO:0016301
AF-A0A5F2KNE6-F1-model_v4 deleted 0.9655 1 478
AF-A0A0F5I3X2-F1-model_v4 Carbohydrate kinase FGGY N-terminal domain-containing protein 0.9633 4 477 GO:0005975
GO:0016301
AF-A0A5F2KNE6-F1-model_v4 deleted 0.9576 1 478
AF-V0APS9-F1-model_v4 deleted 0.952 5 234

Feature Viewer

pLDDT pTM Quality
92.19 0.91 High
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Predicted Structure (AlphaFold2)

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