F189403

General Info

Members Datasets Scaffolds Average Seq Length
143 121 286 338

Family's Representative Sequence

Representative Sequence 3300037466|Ga0395898_0307115|Ga0395898_0307115_196_1269
Length 357
Sequence MKEAAMDGVVLVTGGSGFIGGWCVIGLLQQGYRVRTTVRDLGKEAAVRAAIGKVVDPGDRLSFHAADLMADAGWDEAAAGCDYVLHVASPLGVAEPKDPDELITPAREGAKRAVNAAIKAGAKRIVLTSSVAATSKGEDAGDDWMADEGCWTDASDKRVGAYAQSKTLAERAAWDLISGQGGATSLATVNPTLVLGPVLSRDYSESVQVVERLLSGRVPGLPRLGFNIVDVRDVADLHIRAMTDPAAAGQRFIAAGRFAWMADIAEVLRKNLSKAEAAKVPTRKVPDMVVRMAGMVDKDLGSVVNRLGQKHDFTSAKAQNQLGWRPRPMAETVVDCAKSLIAEGIVGPQLHAAAAPL

Samples

Sample ID Description Type Environment
1 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
2 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
3 3300003911 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
6 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
7 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
8 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
9 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
10 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
11 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
12 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
13 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
14 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
15 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
16 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
17 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
18 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
19 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
20 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
21 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
22 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
23 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
24 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
25 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
26 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
28 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
29 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
30 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
31 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
32 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
33 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
50 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
51 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
52 3300033442 Root nodule microbial communities collected in Santa Monica, California, United States - Edamame nodules 1 Metagenome Nodule
53 3300034817 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1 Metagenome Rhizosphere
54 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
55 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
56 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
57 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
58 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
59 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
60 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
61 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
62 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
63 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
64 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
65 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
66 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
67 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
68 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
69 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
70 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
71 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
72 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
73 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
74 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
75 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
76 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
77 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
78 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
79 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
80 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
81 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
82 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
83 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
84 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
85 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
86 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
87 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
88 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
89 3300053102 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 endosphere Metagenome Endosphere
90 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
91 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
92 3300053138 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 endosphere Metagenome Endosphere
93 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
94 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
95 2513237096 Bradyrhizobium pachyrhizi USDA 3259 Isolate Nodule
96 2513237137 Bradyrhizobium elkanii USDA 94 Isolate Nodule
97 2513237145 Bradyrhizobium elkanii USDA 3254 Isolate Nodule
98 2524023228 Bradyrhizobium sp. Th.b2 Isolate Nodule
99 2667528175 Rhizobium tropici NFR14 Isolate Rhizoplane
100 2728368998 Bradyrhizobium macuxiense BR 10303 Isolate Nodule
101 2791355197 Bradyrhizobium sp. C9 Isolate Nodule
102 2885374607 Bradyrhizobium sp. NAS96.2 Isolate Unclassified
103 2903748898 Bradyrhizobium uaiense UFLA 03-164 Isolate Nodule
104 2904690495 Bradyrhizobium ivorense CI-1B Isolate Nodule
105 2904699407
106 2906610324
107 2906635258 Bradyrhizobium sp. USDA 3458 Isolate Unclassified
108 2906660503 Bradyrhizobium brasilense UFLA 03-321 Isolate Unclassified
109 2908739725 Bradyrhizobium sp. UFLA03-84 Isolate Nodule
110 2908756301 Bradyrhizobium ivorense CI-41S Isolate Nodule
111 2922425934
112 2935630451 Bradyrhizobium sp. I1.14.4 Isolate Nodule
113 2941507105 Bradyrhizobium sp. i1.12.3 Isolate Nodule
114 2941515067 Bradyrhizobium sp. i1.14.1 Isolate Nodule
115 2941523033 Bradyrhizobium sp. i1.8.4 Isolate Nodule
116 3005474847 Bradyrhizobium sp. CCBAU 53421 Isolate Nodule
117 8006933436 Bradyrhizobium septentrionale 7(2017) Isolate Unclassified
118 8006973647 Bradyrhizobium septentrionale 162S2 Isolate Nodule
119 8019555841 Bradyrhizobium sp. JR6.1 Isolate Nodule
120 8019565922 Bradyrhizobium sp. JR3.5 Isolate Nodule
121 8056689827 Bradyrhizobium semiaridum WSM 1704 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 82.86
Metatranscriptomes 0
Isolates 17.14

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.99
Nodule 13.99
Rhizoplane 3.5
Rhizosphere 68.53
Stem 0
Stem Tuber 0
Unclassified 3.5

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0395898_0307115 3300037466 Bacteria 1513
2 Ga0055535_1000302 3300003761 Bacteria 50219
3 JGI25405J52794_10025166 3300003911 Unclassified 1219
4 Ga0070658_10146780 3300005327 Bacteria 1973
5 Ga0070658_10166645 3300005327 Bacteria 1850
6 Ga0070670_100070184 3300005331 Bacteria 3008
7 Ga0070691_10016608 3300005341 Unclassified 3383
8 Ga0070671_100116051 3300005355 Bacteria 2251
9 Ga0070714_100046220 3300005435 Bacteria 3692
10 Ga0070681_10012291 3300005458 Bacteria 8493
11 Ga0070706_100070518 3300005467 Unclassified 3232
12 Ga0070698_100004058 3300005471 Bacteria 16102
13 Ga0070679_100022320 3300005530 Bacteria 6186
14 Ga0070697_100045006 3300005536 Bacteria 3576
15 Ga0070665_100000058 3300005548 Bacteria 225040
16 Ga0070664_100073022 3300005564 Bacteria 2943
17 Ga0068856_100138518 3300005614 Bacteria 2440
18 Ga0068851_10156692 3300005834 Bacteria 1248
19 Ga0068863_100101768 3300005841 Bacteria 2731
20 Ga0068858_100184984 3300005842 Bacteria 1968
21 Ga0081455_10000069 3300005937 Bacteria 111044
22 Ga0081455_10017376 3300005937 Bacteria 6900
23 Ga0081455_10110663 3300005937 Bacteria 2183
24 Ga0070717_10230098 3300006028 Bacteria 1632
25 Ga0075431_100017460 3300006847 Bacteria 7294
26 Ga0068865_100000107 3300006881 Bacteria 43014
27 Ga0068865_100227701 3300006881 Bacteria 1461
28 Ga0099795_10048094 3300007788 Unclassified 1543
29 Ga0105240_10001124 3300009093 Bacteria 46977
30 Ga0105240_10083301 3300009093 Bacteria 3925
31 Ga0105240_10246719 3300009093 Bacteria 2067
32 Ga0114129_10522846 3300009147 Bacteria 1547
33 Ga0105248_10016964 3300009177 Bacteria 8019
34 Ga0105248_10294050 3300009177 Bacteria 1829
35 Ga0105237_10298784 3300009545 Bacteria 1613
36 Ga0105238_10095052 3300009551 Bacteria 2968
37 Ga0105238_10255286 3300009551 Bacteria 1732
38 Ga0157375_10074254 3300013308 Bacteria 3422
39 Ga0163163_10025557 3300014325 Bacteria 5630
40 Ga0163163_10039740 3300014325 Bacteria 4593
41 Ga0163163_10206596 3300014325 Bacteria 2012
42 Ga0209233_1000931 3300025261 Bacteria 12737
43 Ga0207705_10070867 3300025909 Bacteria 2526
44 Ga0207695_10001000 3300025913 Bacteria 50091
45 Ga0207695_10008114 3300025913 Bacteria 13203
46 Ga0207695_10026652 3300025913 Bacteria 6450
47 Ga0207671_10132471 3300025914 Bacteria 1914
48 Ga0207657_10018740 3300025919 Bacteria 6594
49 Ga0207652_10077129 3300025921 Bacteria 2907
50 Ga0207694_10012228 3300025924 Bacteria 6470
51 Ga0207664_10130376 3300025929 Bacteria 2116
52 Ga0207706_10011388 3300025933 Bacteria 8102
53 Ga0207704_10001045 3300025938 Bacteria 12287
54 Ga0207711_10001892 3300025941 Bacteria 19067
55 Ga0207667_10342466 3300025949 Bacteria 1526
56 Ga0207702_10129457 3300026078 Bacteria 2269
57 Ga0207641_10162825 3300026088 Bacteria 2029
58 Ga0207676_10002278 3300026095 Bacteria 13770
59 Ga0207698_10271924 3300026142 Bacteria 1562
60 Ga0268266_10000005 3300028379 Bacteria 1448194
61 Ga0265336_10000008 3300028666 Bacteria 336082
62 Ga0265327_10000130 3300031251 Bacteria 165066
63 Ga0265327_10066631 3300031251 Bacteria 1816
64 Ga0307513_10081329 3300031456 Bacteria 3338
65 Ga0315911_1000011 3300033442 Bacteria 264678
66 Ga0373948_0015792 3300034817 Bacteria 1390
67 Ga0373936_0002323 3300035113 Bacteria 7118
68 Ga0373931_0049619 3300035691 Bacteria 2230
69 Ga0373935_0028084 3300035692 Bacteria 3477
70 Ga0395899_0000373 3300037312 Bacteria 53717
71 Ga0395899_0198076 3300037312 Bacteria 1402
72 Ga0395900_0000052 3300037418 Bacteria 223910
73 Ga0395900_0126833 3300037418 Bacteria 2617
74 Ga0395898_0013380 3300037466 Bacteria 8450
75 Ga0395905_0023220 3300037471 Bacteria 5862
76 Ga0395905_0027149 3300037471 Bacteria 5399
77 Ga0395905_0066627 3300037471 Bacteria 3372
78 Ga0395905_0089322 3300037471 Bacteria 2888
79 Ga0395901_0000001 3300038443 Bacteria 800383
80 Ga0436360_1350830 3300039438 Bacteria 4400
81 Ga0495638_0002128 3300046460 Bacteria 16657
82 Ga0495650_0000045 3300046471 Bacteria 346204
83 Ga0495639_0023958 3300046475 Bacteria 2685
84 Ga0495583_0034587 3300046506 Bacteria 2419
85 Ga0495610_0000101 3300046512 Bacteria 99012
86 Ga0495637_0029785 3300046520 Bacteria 2427
87 Ga0495654_0000018 3300046530 Bacteria 293124
88 Ga0495668_0050223 3300046616 Unclassified 2312
89 Ga0495611_0009603 3300046648 Bacteria 4088
90 Ga0495625_0004251 3300046660 Bacteria 13639
91 Ga0495625_0008775 3300046660 Bacteria 8565
92 Ga0495625_0021612 3300046660 Bacteria 4949
93 Ga0495646_0159917 3300046680 Bacteria 1248
94 Ga0495669_0024697 3300046684 Bacteria 2618
95 Ga0495672_0016249 3300047320 Bacteria 5023
96 Ga0495681_0082004 3300047470 Bacteria 1438
97 Ga0495686_0032487 3300047472 Bacteria 3377
98 Ga0496109_0049819 3300048912 Bacteria 3814
99 Ga0496113_0080704 3300048916 Bacteria 2492
100 Ga0496115_0004139 3300048918 Bacteria 10471
101 Ga0496115_0050043 3300048918 Bacteria 3346
102 Ga0496121_0093794 3300048924 Bacteria 2336
103 Ga0496126_0284167 3300048929 Bacteria 1370
104 Ga0501033_0039861 3300049570 Bacteria 3508
105 Ga0501034_0531259 3300049571 Bacteria 1087
106 Ga0501047_0127765 3300049581 Bacteria 2422
107 Ga0501044_0001825 3300049823 Bacteria 24794
108 nmdc:mga0yw44_171052_c1 3300050492 Bacteria 1426
109 nmdc:mga06r32_188180_c1 3300050510 Bacteria 2051
110 Ga0500635_0000003 3300053080 Bacteria 216927
111 Ga0500554_024065 3300053102 Bacteria 1720
112 Ga0500556_0000838 3300053104 Bacteria 17665
113 Ga0500562_003238 3300053108 Bacteria 4067
114 Ga0500564_066927 3300053138 Bacteria 1624
115 Ga0500573_0041180 3300053140 Bacteria 2667
116 Ga0500645_002542 3300053730 Bacteria 8050
117 2513661175 2513237096 Bacteria 8722461
118 2513860418 2513237137 Bacteria 9558895
119 2513922853 2513237145 Bacteria 8979722
120 2524536164 2524023228 Bacteria 10118060
121 2671123427 2667528175 Bacteria 7532676
122 2728749519 2728368998 Bacteria 8720350
123 2793073091 2791355197 Bacteria 8420563
124 2885379127 2885374607 Bacteria 8927485
125 2903756947 2903748898 Bacteria 9972761
126 2904697467 2904690495 Bacteria 9412302
127 2904705221
128 2906610918
129 2906635721 2906635258 Bacteria 8601019
130 2906661717 2906660503 Bacteria 8595048
131 2908744437 2908739725 Bacteria 8628932
132 2908762077 2908756301 Bacteria 8864324
133 2922428404
134 2935637879 2935630451 Bacteria 8169952
135 2941514552 2941507105 Bacteria 8166816
136 2941522448 2941515067 Bacteria 8166720
137 2941530319 2941523033 Bacteria 8169134
138 3005478520 3005474847 Bacteria 9259049
139 8006942840 8006933436 Bacteria 10410654
140 8006982559 8006973647 Bacteria 10679141
141 8019558600 8019555841 Bacteria 9642137
142 8019566699 8019565922 Bacteria 9639779
143 8056691731 8056689827 Bacteria 6712655
144 Ga0395898_0307115
145 Ga0055535_1000302
146 JGI25405J52794_10025166
147 Ga0070658_10146780
148 Ga0070658_10166645
149 Ga0070670_100070184
150 Ga0070691_10016608
151 Ga0070671_100116051
152 Ga0070714_100046220
153 Ga0070681_10012291
154 Ga0070706_100070518
155 Ga0070698_100004058
156 Ga0070679_100022320
157 Ga0070697_100045006
158 Ga0070665_100000058
159 Ga0070664_100073022
160 Ga0068856_100138518
161 Ga0068851_10156692
162 Ga0068863_100101768
163 Ga0068858_100184984
164 Ga0081455_10000069
165 Ga0081455_10017376
166 Ga0081455_10110663
167 Ga0070717_10230098
168 Ga0075431_100017460
169 Ga0068865_100000107
170 Ga0068865_100227701
171 Ga0099795_10048094
172 Ga0105240_10001124
173 Ga0105240_10083301
174 Ga0105240_10246719
175 Ga0114129_10522846
176 Ga0105248_10016964
177 Ga0105248_10294050
178 Ga0105237_10298784
179 Ga0105238_10095052
180 Ga0105238_10255286
181 Ga0157375_10074254
182 Ga0163163_10025557
183 Ga0163163_10039740
184 Ga0163163_10206596
185 Ga0209233_1000931
186 Ga0207705_10070867
187 Ga0207695_10001000
188 Ga0207695_10008114
189 Ga0207695_10026652
190 Ga0207671_10132471
191 Ga0207657_10018740
192 Ga0207652_10077129
193 Ga0207694_10012228
194 Ga0207664_10130376
195 Ga0207706_10011388
196 Ga0207704_10001045
197 Ga0207711_10001892
198 Ga0207667_10342466
199 Ga0207702_10129457
200 Ga0207641_10162825
201 Ga0207676_10002278
202 Ga0207698_10271924
203 Ga0268266_10000005
204 Ga0265336_10000008
205 Ga0265327_10000130
206 Ga0265327_10066631
207 Ga0307513_10081329
208 Ga0315911_1000011
209 Ga0373948_0015792
210 Ga0373936_0002323
211 Ga0373931_0049619
212 Ga0373935_0028084
213 Ga0395899_0000373
214 Ga0395899_0198076
215 Ga0395900_0000052
216 Ga0395900_0126833
217 Ga0395898_0013380
218 Ga0395905_0023220
219 Ga0395905_0027149
220 Ga0395905_0066627
221 Ga0395905_0089322
222 Ga0395901_0000001
223 Ga0436360_1350830
224 Ga0495638_0002128
225 Ga0495650_0000045
226 Ga0495639_0023958
227 Ga0495583_0034587
228 Ga0495610_0000101
229 Ga0495637_0029785
230 Ga0495654_0000018
231 Ga0495668_0050223
232 Ga0495611_0009603
233 Ga0495625_0004251
234 Ga0495625_0008775
235 Ga0495625_0021612
236 Ga0495646_0159917
237 Ga0495669_0024697
238 Ga0495672_0016249
239 Ga0495681_0082004
240 Ga0495686_0032487
241 Ga0496109_0049819
242 Ga0496113_0080704
243 Ga0496115_0004139
244 Ga0496115_0050043
245 Ga0496121_0093794
246 Ga0496126_0284167
247 Ga0501033_0039861
248 Ga0501034_0531259
249 Ga0501047_0127765
250 Ga0501044_0001825
251 nmdc:mga0yw44_171052_c1
252 nmdc:mga06r32_188180_c1
253 Ga0500635_0000003
254 Ga0500554_024065
255 Ga0500556_0000838
256 Ga0500562_003238
257 Ga0500564_066927
258 Ga0500573_0041180
259 Ga0500645_002542
260 2513661175
261 2513860418
262 2513922853
263 2524536164
264 2671123427
265 2728749519
266 2793073091
267 2885379127
268 2903756947
269 2904697467
270 2904705221
271 2906610918
272 2906635721
273 2906661717
274 2908744437
275 2908762077
276 2922428404
277 2935637879
278 2941514552
279 2941522448
280 2941530319
281 3005478520
282 8006942840
283 8006982559
284 8019558600
285 8019566699
286 8056691731

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

10

255

0.84

PF01073

3Beta_HSD

3-beta hydroxysteroid dehydrogenase/isomerase family

11

267

0.81

PF16363

GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

11

133

0.8

PF07993

NAD_binding_4

Male sterility protein

12

214

0.77

PF13460

NAD_binding_10

NAD(P)H-binding

14

173

0.7

Structural Annotation

Top 5 Hits

ID Description Score Start End
4r1t-assembly1.cif.gz_A crystal structure of petunia hydrida cinnamoyl-coa reductase 0.9164 2 344
4qtz-assembly1.cif.gz_A crystal structure of cinnamyl-alcohol dehydrogenase 2 0.9159 3 344
4r1s-assembly2.cif.gz_B crystal structure of petunia hydrida cinnamoyl-coa reductase 0.9135 1 343
4r1u-assembly1.cif.gz_A crystal structure of medicago truncatula cinnamoyl-coa reductase 0.9119 4 343
4qtz-assembly1.cif.gz_A crystal structure of cinnamyl-alcohol dehydrogenase 2 0.9104 3 344
ID Description Score Start End Superfamily
af_Q19391_1_343_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9469 4 344 3.40.50.720
af_Q2G146_1_341_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9433 4 342 3.40.50.720
af_Q2G146_1_341_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9354 4 342 3.40.50.720
af_Q19391_1_343_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9282 4 344 3.40.50.720
af_Q69U05_2_321_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9169 2 343 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A259BK41-F1-model_v4 NAD-dependent epimerase/dehydratase domain-containing protein 0.988 112 344 GO:0016616
AF-A0A4Q2ZBH5-F1-model_v4 NAD-dependent epimerase/dehydratase family protein 0.9877 4 196 GO:0016616
AF-A0A434TVA9-F1-model_v4 Aldehyde reductase 0.984 189 344
AF-A0A434SK63-F1-model_v4 NAD-dependent epimerase/dehydratase family protein 0.9828 33 344 GO:0016616
AF-A0A7Y7YBD3-F1-model_v4 NAD-dependent epimerase/dehydratase family protein 0.9826 138 344 GO:0016616

Map