F192935

General Info

Members Datasets Scaffolds Average Seq Length
144 99 143 420

Family's Representative Sequence

Representative Sequence 3300049579|Ga0501043_0007526|Ga0501043_0007526_6444_7901
Length 485
Sequence VSTSASEIHPAFAAGLPETLFGEPVPIGPPARANRLNCGMRGLAASLPVASATNKTTTFRQSTAASWSFRRPMATVLKRDNVSKALSTALDAGAGLLRLTPTWVPRSFLHPGKRIKLAPGDWYAFGAHRGGIDERWFASTTEAANDNRTPDEGLSYVTHGGQRFTLADAVAESGDKLIGKTMFDKYERWPVYSKFFDNMGPIPHHMHQGFKHAALTGQQGKPESYYFPPQYNNVDNNFAYTFMGLEPGTTKAQLRKCLENWHKGDNGILDLSKAYRLKRGTGWLIPPGVLHAPGSLCTYEPQWGSDVFGMFQSLVEGREVPWALLVKDVPKDKHQDLDFIIEQLDWEKNVDTHFKNNNYLEPIVDKAQSGPGYTDRWIVYGTVDGEQLFSAKELTLEPGAKMTLKDPGAGGWITVQGRGRIGKLALQTPAMIHFGQETEDEVFITHEAATAGVEVENTGSEPLVSLRYFGPNAHKSLPSVGDYLK

Samples

Sample ID Description Type Environment
1 2687453341 Pirellula sp. SH-Sr6A Isolate Unclassified
2 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
3 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
4 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
5 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
6 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
7 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
8 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
9 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
10 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
11 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
12 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
13 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
14 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
15 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
16 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
17 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
18 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
19 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
20 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
21 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
22 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
23 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
24 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
25 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
26 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
27 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
28 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
29 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
30 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
31 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
48 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
49 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
50 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
51 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
52 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
53 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
54 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
55 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
56 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
57 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
58 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
59 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
60 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
61 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
62 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
63 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
64 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
65 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
66 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
67 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
68 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
69 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
70 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
71 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
72 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
73 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
74 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
75 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
76 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
77 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
78 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
79 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
80 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
81 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
82 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
83 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
84 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
85 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
87 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
88 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
89 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
90 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
92 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
93 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
94 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
95 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
96 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
97 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
98 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
99 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.31
Metatranscriptomes 0
Isolates 0.69

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.17
Nodule 0
Rhizoplane 0
Rhizosphere 94.44
Stem 0
Stem Tuber 0
Unclassified 1.39

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055530_10010898 3300003791 Bacteria 3310
2 Ga0068869_100194340 3300005334 Bacteria 1597
3 Ga0070689_100003480 3300005340 Bacteria 10481
4 Ga0070689_100009997 3300005340 Bacteria 6752
5 Ga0070679_100202435 3300005530 Bacteria 1950
6 Ga0068853_100000012 3300005539 Bacteria 228770
7 Ga0070686_100002795 3300005544 Bacteria 9613
8 Ga0070686_100059317 3300005544 Bacteria 2465
9 Ga0070665_100000170 3300005548 Bacteria 116622
10 Ga0068855_100010984 3300005563 Bacteria 10927
11 Ga0068857_100080034 3300005577 Bacteria 2917
12 Ga0068859_100278610 3300005617 Unclassified 1765
13 Ga0068863_100047480 3300005841 Bacteria 4072
14 Ga0068858_100018635 3300005842 Bacteria 6499
15 Ga0068858_100128751 3300005842 Bacteria 2373
16 Ga0068860_100013780 3300005843 Bacteria 7927
17 Ga0081455_10152529 3300005937 Bacteria 1780
18 Ga0081455_10184169 3300005937 Bacteria 1578
19 Ga0075363_100035460 3300006048 Bacteria 2610
20 Ga0075428_100002191 3300006844 Bacteria 21126
21 Ga0075428_100054631 3300006844 Bacteria 4376
22 Ga0075428_100101951 3300006844 Bacteria 3129
23 Ga0075430_100112393 3300006846 Bacteria 2271
24 Ga0075430_100120528 3300006846 Bacteria 2187
25 Ga0075431_100040116 3300006847 Bacteria 4824
26 Ga0075429_100029668 3300006880 Bacteria 4751
27 Ga0097620_100278614 3300006931 Unclassified 1765
28 Ga0105240_10001387 3300009093 Bacteria 41645
29 Ga0105240_10011727 3300009093 Bacteria 12176
30 Ga0111539_10082569 3300009094 Bacteria 3779
31 Ga0111539_10087147 3300009094 Bacteria 3669
32 Ga0111539_10096642 3300009094 Bacteria 3470
33 Ga0111539_10114897 3300009094 Bacteria 3157
34 Ga0105245_10008942 3300009098 Bacteria 8738
35 Ga0105245_10213142 3300009098 Bacteria 1860
36 Ga0105237_10030447 3300009545 Bacteria 5481
37 Ga0105239_10117657 3300010375 Bacteria 2949
38 Ga0105239_10165402 3300010375 Bacteria 2473
39 Ga0105239_10174240 3300010375 Bacteria 2406
40 Ga0157369_10015363 3300013105 Bacteria 8633
41 Ga0157369_10186720 3300013105 Bacteria 2180
42 Ga0157369_10278555 3300013105 Bacteria 1742
43 Ga0157372_10063705 3300013307 Bacteria 4135
44 Ga0157375_10000129 3300013308 Bacteria 75013
45 Ga0209050_1000986 3300025298 Bacteria 36241
46 Ga0207705_10021008 3300025909 Bacteria 4658
47 Ga0207695_10001987 3300025913 Bacteria 31578
48 Ga0207695_10005918 3300025913 Bacteria 16028
49 Ga0207695_10195253 3300025913 Bacteria 1940
50 Ga0207671_10052095 3300025914 Bacteria 3032
51 Ga0207657_10096420 3300025919 Bacteria 2460
52 Ga0207652_10261824 3300025921 Bacteria 1560
53 Ga0207659_10097502 3300025926 Bacteria 2209
54 Ga0207667_10010975 3300025949 Bacteria 10556
55 Ga0207651_10153213 3300025960 Bacteria 1797
56 Ga0207651_10166498 3300025960 Bacteria 1734
57 Ga0207703_10006858 3300026035 Bacteria 9068
58 Ga0207703_10081780 3300026035 Bacteria 2693
59 Ga0207639_10000017 3300026041 Bacteria 256177
60 Ga0207641_10285240 3300026088 Bacteria 1554
61 Ga0207676_10278992 3300026095 Bacteria 1516
62 Ga0207674_10082652 3300026116 Bacteria 3212
63 Ga0207698_10057855 3300026142 Bacteria 3001
64 Ga0268266_10001285 3300028379 Bacteria 30591
65 Ga0268266_10138572 3300028379 Bacteria 2182
66 Ga0268264_10009792 3300028381 Bacteria 7931
67 Ga0265319_1003679 3300028563 Bacteria 7896
68 Ga0265319_1015194 3300028563 Bacteria 2993
69 Ga0265318_10008321 3300028577 Bacteria 4624
70 Ga0265323_10037395 3300028653 Bacteria 1779
71 Ga0265322_10005705 3300028654 Bacteria 3678
72 Ga0265336_10008020 3300028666 Bacteria 3727
73 Ga0265338_10016273 3300028800 Bacteria 8103
74 Ga0265338_10028093 3300028800 Bacteria 5622
75 Ga0265338_10059873 3300028800 Bacteria 3352
76 Ga0265330_10002240 3300031235 Bacteria 10654
77 Ga0265332_10008544 3300031238 Bacteria 4602
78 Ga0265332_10008721 3300031238 Bacteria 4541
79 Ga0265320_10002958 3300031240 Bacteria 11616
80 Ga0265325_10000203 3300031241 Bacteria 42252
81 Ga0265325_10003846 3300031241 Bacteria 9650
82 Ga0265329_10003741 3300031242 Bacteria 6549
83 Ga0265340_10023027 3300031247 Bacteria 3178
84 Ga0265339_10000933 3300031249 Bacteria 22454
85 Ga0265331_10000426 3300031250 Bacteria 42359
86 Ga0265331_10021564 3300031250 Bacteria 3294
87 Ga0265327_10001277 3300031251 Bacteria 33154
88 Ga0265327_10009038 3300031251 Bacteria 7286
89 Ga0265316_10046297 3300031344 Bacteria 3447
90 Ga0265313_10000802 3300031595 Bacteria 31726
91 Ga0265314_10000351 3300031711 Bacteria 64055
92 Ga0265314_10025872 3300031711 Bacteria 4418
93 Ga0265342_10001105 3300031712 Bacteria 25873
94 Ga0307414_10000036 3300032004 Bacteria 166533
95 Ga0307414_10049569 3300032004 Bacteria 2904
96 Ga0307414_10133493 3300032004 Bacteria 1931
97 Ga0373927_0016620 3300035695 Bacteria 4854
98 Ga0373947_0014581 3300035725 Bacteria 4508
99 Ga0373947_0075221 3300035725 Bacteria 2079
100 Ga0373925_0000831 3300037068 Bacteria 28499
101 Ga0436360_0264717 3300039438 Unclassified 1923
102 Ga0436360_1015175 3300039438 Bacteria 2669
103 Ga0436361_0265755 3300039447 Bacteria 4909
104 Ga0451577_0001404 3300042876 Bacteria 32201
105 Ga0451577_0004992 3300042876 Bacteria 13752
106 Ga0451577_0104095 3300042876 Bacteria 2537
107 Ga0453684_0002387 3300044712 Bacteria 45815
108 Ga0451576_0014738 3300045051 Bacteria 8691
109 Ga0451576_0037020 3300045051 Bacteria 5170
110 Ga0451576_0092608 3300045051 Bacteria 3144
111 Ga0451576_0137211 3300045051 Bacteria 2551
112 Ga0451576_0199788 3300045051 Bacteria 2088
113 Ga0495630_0000085 3300046517 Bacteria 73665
114 Ga0495630_0015744 3300046517 Bacteria 5525
115 Ga0495630_0039534 3300046517 Bacteria 3526
116 Ga0495665_0059598 3300046531 Bacteria 2015
117 Ga0495586_0000012 3300046535 Bacteria 138093
118 Ga0495658_0014386 3300046683 Bacteria 4043
119 Ga0495613_0063022 3300046689 Bacteria 2713
120 Ga0495674_0003666 3300047319 Bacteria 14942
121 Ga0496121_0039638 3300048924 Bacteria 4146
122 Ga0501033_0003439 3300049570 Bacteria 13025
123 Ga0501034_0007507 3300049571 Bacteria 11598
124 Ga0501034_0010253 3300049571 Bacteria 9775
125 Ga0501034_0011750 3300049571 Bacteria 9060
126 Ga0501034_0016445 3300049571 Bacteria 7592
127 Ga0501037_0100861 3300049573 Bacteria 2084
128 Ga0501043_0007526 3300049579 Bacteria 8643
129 Ga0501046_0000333 3300049580 Bacteria 47539
130 Ga0501047_0051630 3300049581 Bacteria 3973
131 Ga0501047_0314485 3300049581 Bacteria 1406
132 Ga0501070_0000210 3300049586 Bacteria 55138
133 Ga0501227_000094 3300049665 Bacteria 14459
134 Ga0501035_0027909 3300049822 Bacteria 5157
135 Ga0501044_0084465 3300049823 Bacteria 3209
136 nmdc:mga03n38_9918_c1 3300050490 Bacteria 3484
137 nmdc:mga09592_27108_c1 3300050508 Bacteria 4753
138 nmdc:mga06r32_84057_c1 3300050510 Bacteria 3102
139 nmdc:mga08y16_74338_c1 3300050511 Bacteria 3541
140 nmdc:mga0n895_158008_c1 3300050512 Bacteria 2298
141 nmdc:mga0a205_193467_c1 3300050515 Bacteria 1925
142 Ga0500643_028536 3300053087 Bacteria 1725
143 Ga0500559_0000873 3300053136 Bacteria 19330

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300013105 Ga0157369_10015363 Ga0157369_100153633 377
2 3300045051 Ga0451576_0137211 Ga0451576_0137211_11_1183 390
3 3300005843 Ga0068860_100013780 Ga0068860_1000137801 393
4 3300028381 Ga0268264_10009792 Ga0268264_1000979211 393
5 3300005530 Ga0070679_100202435 Ga0070679_1002024352 395
6 3300049571 Ga0501034_0016445 Ga0501034_0016445_492_1733 398
7 3300005937 Ga0081455_10152529 Ga0081455_101525292 401
8 3300042876 Ga0451577_0104095 Ga0451577_0104095_56_1270 402
9 3300049570 Ga0501033_0003439 Ga0501033_0003439_795_2009 402
10 3300049581 Ga0501047_0051630 Ga0501047_0051630_2622_3836 402
11 3300050510 nmdc:mga06r32_84057_c1 nmdc:mga06r32_84057_c1_1150_2385 403
12 3300035695 Ga0373927_0016620 Ga0373927_0016620_1624_2865 405
13 3300035725 Ga0373947_0014581 Ga0373947_0014581_584_1825 405
14 3300037068 Ga0373925_0000831 Ga0373925_0000831_18734_19975 405
15 3300046517 Ga0495630_0039534 Ga0495630_0039534_65_1306 405
16 3300006846 Ga0075430_100112393 Ga0075430_1001123932 406
17 3300006847 Ga0075431_100040116 Ga0075431_1000401162 406
18 3300009094 Ga0111539_10096642 Ga0111539_100966425 406
19 3300028800 Ga0265338_10059873 Ga0265338_100598732 406
20 3300031238 Ga0265332_10008721 Ga0265332_100087213 406
21 3300031241 Ga0265325_10003846 Ga0265325_100038464 406
22 3300031249 Ga0265339_10000933 Ga0265339_1000093312 406
23 3300031250 Ga0265331_10000426 Ga0265331_1000042615 406
24 3300031595 Ga0265313_10000802 Ga0265313_1000080212 406
25 3300031711 Ga0265314_10000351 Ga0265314_1000035151 406
26 3300049571 Ga0501034_0010253 Ga0501034_0010253_7107_8351 406
27 3300006048 Ga0075363_100035460 Ga0075363_1000354602 407
28 3300006844 Ga0075428_100054631 Ga0075428_1000546314 407
29 3300042876 Ga0451577_0001404 Ga0451577_0001404_5499_6746 407
30 3300044712 Ga0453684_0002387 Ga0453684_0002387_39188_40435 407
31 3300049823 Ga0501044_0084465 Ga0501044_0084465_407_1654 407
32 3300050490 nmdc:mga03n38_9918_c1 nmdc:mga03n38_9918_c1_441_1688 407
33 3300005937 Ga0081455_10184169 Ga0081455_101841692 408
34 3300010375 Ga0105239_10117657 Ga0105239_101176571 408
35 3300031251 Ga0265327_10001277 Ga0265327_1000127714 408
36 3300053087 Ga0500643_028536 Ga0500643_028536_441_1700 408
37 3300053136 Ga0500559_0000873 Ga0500559_0000873_4003_5262 408
38 3300006844 Ga0075428_100101951 Ga0075428_1001019511 409
39 3300032004 Ga0307414_10000036 Ga0307414_1000003677 409
40 3300032004 Ga0307414_10133493 Ga0307414_101334932 409
41 3300039438 Ga0436360_0264717 Ga0436360_0264717_368_1621 409
42 3300042876 Ga0451577_0004992 Ga0451577_0004992_3127_4386 409
43 3300045051 Ga0451576_0037020 Ga0451576_0037020_483_1742 409
44 3300049579 Ga0501043_0007526 Ga0501043_0007526_6444_7901 409
45 3300049586 Ga0501070_0000210 Ga0501070_0000210_3003_4343 409
46 3300049665 Ga0501227_000094 Ga0501227_000094_6513_7775 409
47 iso_pu_bacteria 2687453341 2688395163 409
48 3300005544 Ga0070686_100059317 Ga0070686_1000593172 410
49 3300005548 Ga0070665_100000170 Ga0070665_10000017053 410
50 3300009093 Ga0105240_10011727 Ga0105240_100117276 410
51 3300025913 Ga0207695_10005918 Ga0207695_100059182 410
52 3300026142 Ga0207698_10057855 Ga0207698_100578551 410
53 3300028379 Ga0268266_10001285 Ga0268266_100012852 410
54 3300028563 Ga0265319_1015194 Ga0265319_10151944 410
55 3300028577 Ga0265318_10008321 Ga0265318_100083211 410
56 3300028653 Ga0265323_10037395 Ga0265323_100373951 410
57 3300028654 Ga0265322_10005705 Ga0265322_100057054 410
58 3300028666 Ga0265336_10008020 Ga0265336_100080203 410
59 3300028800 Ga0265338_10016273 Ga0265338_100162735 410
60 3300031235 Ga0265330_10002240 Ga0265330_100022403 410
61 3300031238 Ga0265332_10008544 Ga0265332_100085441 410
62 3300031241 Ga0265325_10000203 Ga0265325_1000020346 410
63 3300031242 Ga0265329_10003741 Ga0265329_100037416 410
64 3300031247 Ga0265340_10023027 Ga0265340_100230274 410
65 3300031250 Ga0265331_10021564 Ga0265331_100215643 410
66 3300031251 Ga0265327_10009038 Ga0265327_100090386 410
67 3300031344 Ga0265316_10046297 Ga0265316_100462973 410
68 3300031711 Ga0265314_10025872 Ga0265314_100258723 410
69 3300031712 Ga0265342_10001105 Ga0265342_100011053 410
70 3300032004 Ga0307414_10049569 Ga0307414_100495693 410
71 3300035725 Ga0373947_0075221 Ga0373947_0075221_469_1740 410
72 3300046517 Ga0495630_0000085 Ga0495630_0000085_8754_10025 410
73 3300046531 Ga0495665_0059598 Ga0495665_0059598_490_1761 410
74 3300046535 Ga0495586_0000012 Ga0495586_0000012_40262_41533 410
75 3300046683 Ga0495658_0014386 Ga0495658_0014386_2668_3939 410
76 3300046689 Ga0495613_0063022 Ga0495613_0063022_179_1450 410
77 3300047319 Ga0495674_0003666 Ga0495674_0003666_1097_2368 410
78 3300048924 Ga0496121_0039638 Ga0496121_0039638_857_2122 410
79 3300005617 Ga0068859_100278610 Ga0068859_1002786102 411
80 3300006931 Ga0097620_100278614 Ga0097620_1002786142 411
81 3300013308 Ga0157375_10000129 Ga0157375_1000012945 411
82 3300045051 Ga0451576_0092608 Ga0451576_0092608_1535_2794 411
83 3300049571 Ga0501034_0007507 Ga0501034_0007507_1434_2699 411
84 3300049571 Ga0501034_0011750 Ga0501034_0011750_2580_3845 411
85 3300049573 Ga0501037_0100861 Ga0501037_0100861_536_1795 411
86 3300049580 Ga0501046_0000333 Ga0501046_0000333_9254_10513 411
87 3300049581 Ga0501047_0314485 Ga0501047_0314485_79_1338 411
88 3300049822 Ga0501035_0027909 Ga0501035_0027909_3116_4375 411
89 3300005539 Ga0068853_100000012 Ga0068853_100000012150 412
90 3300013307 Ga0157372_10063705 Ga0157372_100637054 412
91 3300026041 Ga0207639_10000017 Ga0207639_10000017176 412
92 3300005334 Ga0068869_100194340 Ga0068869_1001943401 413
93 3300005577 Ga0068857_100080034 Ga0068857_1000800341 413
94 3300006844 Ga0075428_100002191 Ga0075428_10000219114 413
95 3300006846 Ga0075430_100120528 Ga0075430_1001205282 413
96 3300009093 Ga0105240_10001387 Ga0105240_1000138717 413
97 3300009094 Ga0111539_10082569 Ga0111539_100825694 413
98 3300009094 Ga0111539_10087147 Ga0111539_100871473 413
99 3300009094 Ga0111539_10114897 Ga0111539_101148972 413
100 3300009098 Ga0105245_10008942 Ga0105245_100089426 413
101 3300010375 Ga0105239_10165402 Ga0105239_101654024 413
102 3300013105 Ga0157369_10186720 Ga0157369_101867202 413
103 3300013105 Ga0157369_10278555 Ga0157369_102785552 413
104 3300025913 Ga0207695_10001987 Ga0207695_1000198712 413
105 3300025921 Ga0207652_10261824 Ga0207652_102618242 413
106 3300025926 Ga0207659_10097502 Ga0207659_100975022 413
107 3300025960 Ga0207651_10153213 Ga0207651_101532131 413
108 3300026116 Ga0207674_10082652 Ga0207674_100826522 413
109 3300028563 Ga0265319_1003679 Ga0265319_10036796 413
110 3300028800 Ga0265338_10028093 Ga0265338_100280932 413
111 3300031240 Ga0265320_10002958 Ga0265320_100029589 413
112 3300039438 Ga0436360_1015175 Ga0436360_1015175_10_1314 413
113 3300039447 Ga0436361_0265755 Ga0436361_0265755_47_1312 413
114 3300046517 Ga0495630_0015744 Ga0495630_0015744_355_1635 413
115 3300050511 nmdc:mga08y16_74338_c1 nmdc:mga08y16_74338_c1_536_1801 413
116 3300050515 nmdc:mga0a205_193467_c1 nmdc:mga0a205_193467_c1_433_1698 413
117 3300003791 Ga0055530_10010898 Ga0055530_100108982 414
118 3300005340 Ga0070689_100003480 Ga0070689_1000034809 414
119 3300005340 Ga0070689_100009997 Ga0070689_1000099974 414
120 3300005544 Ga0070686_100002795 Ga0070686_1000027955 414
121 3300005563 Ga0068855_100010984 Ga0068855_1000109842 414
122 3300005841 Ga0068863_100047480 Ga0068863_1000474804 414
123 3300005842 Ga0068858_100018635 Ga0068858_1000186353 414
124 3300005842 Ga0068858_100128751 Ga0068858_1001287512 414
125 3300006880 Ga0075429_100029668 Ga0075429_1000296681 414
126 3300009098 Ga0105245_10213142 Ga0105245_102131421 414
127 3300009545 Ga0105237_10030447 Ga0105237_100304473 414
128 3300010375 Ga0105239_10174240 Ga0105239_101742401 414
129 3300025298 Ga0209050_1000986 Ga0209050_100098631 414
130 3300025909 Ga0207705_10021008 Ga0207705_100210082 414
131 3300025913 Ga0207695_10195253 Ga0207695_101952531 414
132 3300025914 Ga0207671_10052095 Ga0207671_100520952 414
133 3300025919 Ga0207657_10096420 Ga0207657_100964202 414
134 3300025949 Ga0207667_10010975 Ga0207667_100109759 414
135 3300025960 Ga0207651_10166498 Ga0207651_101664982 414
136 3300026035 Ga0207703_10006858 Ga0207703_100068583 414
137 3300026035 Ga0207703_10081780 Ga0207703_100817802 414
138 3300026088 Ga0207641_10285240 Ga0207641_102852402 414
139 3300026095 Ga0207676_10278992 Ga0207676_102789922 414
140 3300028379 Ga0268266_10138572 Ga0268266_101385722 414
141 3300045051 Ga0451576_0014738 Ga0451576_0014738_3902_5176 414
142 3300045051 Ga0451576_0199788 Ga0451576_0199788_477_1829 414
143 3300050508 nmdc:mga09592_27108_c1 nmdc:mga09592_27108_c1_2929_4197 414
144 3300050512 nmdc:mga0n895_158008_c1 nmdc:mga0n895_158008_c1_566_1918 414

Structural Annotation

Top 5 Hits

ID Description Score Start End
5j4f-assembly1.cif.gz_A crystal structure of the n-terminally his6-tagged hp0902, an uncharacterized protein from helicobacter pylori 26695 0.7688 311 394
2q1z-assembly2.cif.gz_D crystal structure of rhodobacter sphaeroides sige in complex with the anti-sigma chrr 0.7656 290 393
3o14-assembly2.cif.gz_B crystal structure of an anti-ecfsigma factor, chrr (maqu_0586) from marinobacter aquaeolei vt8 at 1.70 a resolution 0.7197 294 402
1zx5-assembly1.cif.gz_A the structure of a putative mannosephosphate isomerase from archaeoglobus fulgidus 0.7139 78 394
6b8w-assembly1.cif.gz_B 1.9 angstrom resolution crystal structure of cupin_2 domain (pfam 07883) of xre family transcriptional regulator from enterobacter cloacae. 0.7031 295 394
ID Description Score Start End Superfamily
af_A4ID25_1_85_2.60.120.1030 Mainly Beta;Sandwich;Jelly Rolls;Clp1, DNA binding domain 0.7927 310 396 2.60.120.1030
af_Q4DXH4_1_76_2.60.120.1030 Mainly Beta;Sandwich;Jelly Rolls;Clp1, DNA binding domain 0.787 312 395 2.60.120.1030
af_A0A1D6FDS5_137_242_2.60.120.10 Mainly Beta;Sandwich;Jelly Rolls;Jelly Rolls 0.7358 283 394 2.60.120.10
af_Q10299_1_75_2.60.120.1030 Mainly Beta;Sandwich;Jelly Rolls;Clp1, DNA binding domain 0.7191 316 396 2.60.120.1030
af_Q9FZH5_335_433_2.60.120.10 Mainly Beta;Sandwich;Jelly Rolls;Jelly Rolls 0.7167 283 392 2.60.120.10
ID Description Score Start End GO Terms
AF-A0A7C6DDU5-F1-model_v4 Uncharacterized protein 0.98 322 393
AF-A0A3B8Q6K2-F1-model_v4 Uncharacterized protein 0.9676 252 412
AF-A0A0J9BY29-F1-model_v4 Uncharacterized protein 0.9625 285 394
AF-X1ANN8-F1-model_v4 Uncharacterized protein 0.9603 298 405
AF-A0A3B8Q6K2-F1-model_v4 Uncharacterized protein 0.9563 252 412

Feature Viewer

pLDDT pTM Quality
81.4 0.84 High
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Predicted Structure (AlphaFold2)

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