F196582

General Info

Members Datasets Scaffolds Average Seq Length
146 112 143 248

Family's Representative Sequence

Representative Sequence 3300005330|Ga0070690_100317888|Ga0070690_1003178881
Length 289
Sequence MAIALTIAGSDPSGGAGIQADLKTFAAHGVYGASAITAITVQSTRGVESVTPLEADLVTAQIEAVAADLAIDATKIGMLANAAIVEAVAAAIKELELPLVVVDPVLVSSSGDRLIDEDGVRALCAELWTRARVVTPNLPEAEALSGVRISSQTTLRDAARRIRDMGPRAVIITGGHGSGSEMIDLLLDGDEFQEYAVARVDTRNTHGTGCAFASAVAASLALGRALPDAARRAQLYVAGALAHAPEIGRGKGPIDHFWQTKYDDHRKGREARKEDGNSIPGLQPSKPSR

Samples

Sample ID Description Type Environment
1 2599185353 Staphylococcus sp. NFPP34 Isolate Rhizoplane
2 2600254943 Staphylococcus pasteuri NFIX07 Isolate Rhizoplane
3 2857357740 Paraburkholderia tropica BE15 Isolate Rhizosphere
4 3300001977 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5 Metagenome Rhizosphere
5 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
6 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
7 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
8 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
9 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
10 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
11 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
12 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
13 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
14 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
15 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
16 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
17 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
18 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
19 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
20 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
21 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
22 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
23 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
24 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
25 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
26 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
27 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
28 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
29 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
30 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
31 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
32 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
33 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
34 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
35 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
36 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
37 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
38 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
39 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
40 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
41 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
42 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
43 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
44 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
45 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
46 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
47 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
48 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
49 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
50 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
51 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
52 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
53 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
54 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
55 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
77 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
80 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
81 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
82 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
83 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
84 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
85 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
86 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
87 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
88 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
89 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
90 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
91 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
92 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
93 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
94 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
95 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
96 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
97 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
98 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
99 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
100 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
101 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
102 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
103 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
104 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
105 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
106 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
107 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
108 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
109 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
110 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
111 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
112 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.95
Metatranscriptomes 0
Isolates 2.05

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.11
Nodule 0
Rhizoplane 5.48
Rhizosphere 90.41
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24746J21847_1000721 3300001977 Bacteria 5094
2 Ga0070676_10058182 3300005328 Bacteria 2290
3 Ga0070676_10162262 3300005328 Bacteria 1439
4 Ga0070683_100448624 3300005329 Bacteria 1231
5 Ga0070690_100317888 3300005330 Bacteria 1121
6 Ga0070689_100054441 3300005340 Bacteria 3097
7 Ga0070691_10025703 3300005341 Bacteria 2742
8 Ga0070669_100021699 3300005353 Bacteria 4590
9 Ga0070669_100049044 3300005353 Bacteria 3083
10 Ga0070675_100008344 3300005354 Bacteria 8038
11 Ga0070673_100003830 3300005364 Bacteria 9436
12 Ga0070659_100350054 3300005366 Bacteria 1239
13 Ga0070703_10060155 3300005406 Bacteria 1241
14 Ga0070701_10053688 3300005438 Bacteria 2098
15 Ga0070700_100008685 3300005441 Bacteria 5542
16 Ga0070700_100034782 3300005441 Bacteria 3045
17 Ga0070694_100026776 3300005444 Bacteria 3740
18 Ga0070694_100052351 3300005444 Bacteria 2759
19 Ga0070694_100402625 3300005444 Bacteria 1072
20 Ga0068867_100046454 3300005459 Bacteria 3190
21 Ga0070707_100059359 3300005468 Bacteria 3670
22 Ga0070679_100179353 3300005530 Bacteria 2090
23 Ga0070686_100014869 3300005544 Bacteria 4493
24 Ga0070686_100129284 3300005544 Bacteria 1744
25 Ga0070695_100024418 3300005545 Bacteria 3723
26 Ga0070665_100426353 3300005548 Bacteria 1335
27 Ga0070704_100004225 3300005549 Bacteria 8296
28 Ga0070664_100392122 3300005564 Bacteria 1269
29 Ga0068854_100005948 3300005578 Bacteria 7731
30 Ga0068854_100229152 3300005578 Bacteria 1474
31 Ga0068861_100000304 3300005719 Bacteria 27558
32 Ga0068861_100310521 3300005719 Bacteria 1369
33 Ga0068870_10282129 3300005840 Bacteria 1042
34 Ga0068858_100353696 3300005842 Bacteria 1407
35 Ga0068860_100044899 3300005843 Bacteria 4212
36 Ga0068862_100047845 3300005844 Bacteria 3650
37 Ga0068862_100095059 3300005844 Bacteria 2599
38 Ga0081538_10034307 3300005981 Bacteria 3356
39 Ga0075368_10143104 3300006042 Bacteria 997
40 Ga0070715_10000001 3300006163 Bacteria 693690
41 Ga0070716_100402924 3300006173 Bacteria 984
42 Ga0075367_10009657 3300006178 Bacteria 5051
43 Ga0075366_10284974 3300006195 Bacteria 1010
44 Ga0097621_100276455 3300006237 Bacteria 1477
45 Ga0075428_100062731 3300006844 Bacteria 4068
46 Ga0075433_10034977 3300006852 Bacteria 4318
47 Ga0075433_10160940 3300006852 Bacteria 1998
48 Ga0075434_100759847 3300006871 Bacteria 986
49 Ga0075429_100273736 3300006880 Bacteria 1479
50 Ga0075429_100389711 3300006880 Bacteria 1220
51 Ga0075435_100147166 3300007076 Bacteria 1979
52 Ga0105240_10147546 3300009093 Bacteria 2805
53 Ga0111539_10051420 3300009094 Bacteria 4907
54 Ga0105245_10007302 3300009098 Bacteria 9676
55 Ga0105245_10810595 3300009098 Bacteria 975
56 Ga0114129_10003110 3300009147 Bacteria 23277
57 Ga0114129_10019938 3300009147 Bacteria 9543
58 Ga0114129_10051932 3300009147 Bacteria 5754
59 Ga0114129_10059950 3300009147 Bacteria 5321
60 Ga0114129_10194123 3300009147 Bacteria 2755
61 Ga0114129_10335464 3300009147 Bacteria 2007
62 Ga0114129_10423299 3300009147 Bacteria 1751
63 Ga0105242_10000427 3300009176 Bacteria 33600
64 Ga0105248_10338195 3300009177 Bacteria 1695
65 Ga0105249_10111253 3300009553 Unclassified 2590
66 Ga0105239_10071992 3300010375 Bacteria 3798
67 Ga0157370_10589569 3300013104 Bacteria 1018
68 Ga0163162_10411504 3300013306 Unclassified 1485
69 Ga0157380_10078566 3300014326 Bacteria 2692
70 Ga0207653_10098716 3300025885 Bacteria 1030
71 Ga0207685_10000005 3300025905 Bacteria 289944
72 Ga0207645_10050856 3300025907 Bacteria 2647
73 Ga0207652_10145919 3300025921 Bacteria 2118
74 Ga0207646_10014032 3300025922 Bacteria 7626
75 Ga0207681_10398435 3300025923 Bacteria 1111
76 Ga0207687_10000412 3300025927 Bacteria 29013
77 Ga0207644_10909536 3300025931 Unclassified 738
78 Ga0207690_10313572 3300025932 Bacteria 1231
79 Ga0207686_10000061 3300025934 Bacteria 97978
80 Ga0207691_10451859 3300025940 Bacteria 1093
81 Ga0207711_10299195 3300025941 Bacteria 1484
82 Ga0207661_10408841 3300025944 Bacteria 1231
83 Ga0207679_10188702 3300025945 Bacteria 1712
84 Ga0207667_10333329 3300025949 Bacteria 1549
85 Ga0207651_10000436 3300025960 Bacteria 17616
86 Ga0207640_10005970 3300025981 Bacteria 6650
87 Ga0207640_10071985 3300025981 Bacteria 2330
88 Ga0207703_10664350 3300026035 Unclassified 989
89 Ga0207708_10016496 3300026075 Bacteria 5555
90 Ga0207708_10055663 3300026075 Bacteria 3016
91 Ga0207648_10007771 3300026089 Bacteria 10470
92 Ga0207675_100000688 3300026118 Bacteria 33349
93 Ga0207675_100276952 3300026118 Bacteria 1629
94 Ga0207675_100279511 3300026118 Bacteria 1622
95 Ga0207428_10142930 3300027907 Bacteria 1825
96 Ga0268265_10023637 3300028380 Bacteria 4335
97 Ga0268265_10326281 3300028380 Bacteria 1392
98 Ga0268264_10032910 3300028381 Bacteria 4255
99 Ga0265319_1000073 3300028563 Bacteria 81138
100 Ga0265322_10033099 3300028654 Bacteria 1474
101 Ga0265338_10000464 3300028800 Bacteria 72259
102 Ga0265324_10057373 3300029957 Bacteria 1333
103 Ga0265325_10026549 3300031241 Bacteria 3135
104 Ga0373962_0136621 3300035242 Bacteria 793
105 Ga0466963_0040386 3300044694 Bacteria 3058
106 Ga0451576_0534070 3300045051 Bacteria 1232
107 Ga0466967_0000019 3300045976 Bacteria 79629
108 Ga0466967_0251702 3300045976 Bacteria 1688
109 Ga0466967_0339293 3300045976 Bacteria 1453
110 Ga0466967_0578504 3300045976 Bacteria 1107
111 Ga0495613_0000565 3300046689 Bacteria 30469
112 Ga0495604_0010984 3300047317 Bacteria 7189
113 Ga0495676_0224830 3300047321 Bacteria 1292
114 Ga0495602_0000055 3300048088 Bacteria 110084
115 Ga0496102_0239788 3300048905 Bacteria 1710
116 Ga0496104_0000462 3300048907 Bacteria 35037
117 Ga0496105_0000101 3300048908 Bacteria 58062
118 Ga0496106_0335897 3300048909 Bacteria 1213
119 Ga0496107_0150305 3300048910 Bacteria 1722
120 Ga0496114_0033405 3300048917 Bacteria 4239
121 Ga0501034_0169137 3300049571 Bacteria 2154
122 Ga0501069_0055556 3300049585 Bacteria 2206
123 Ga0501070_0302608 3300049586 Bacteria 1302
124 Ga0501071_0138929 3300049587 Bacteria 1809
125 Ga0501074_0023949 3300049590 Bacteria 4437
126 nmdc:mga03n38_49061_c1 3300050490 Bacteria 1875
127 nmdc:mga0k408_7523_c1 3300050493 Bacteria 5817
128 nmdc:mga04h51_115425_c1 3300050495 Bacteria 995
129 nmdc:mga05p37_145888_c1 3300050507 Bacteria 2898
130 nmdc:mga05p37_234583_c1 3300050507 Bacteria 2209
131 nmdc:mga05p37_32593_c1 3300050507 Bacteria 6373
132 nmdc:mga05p37_4159_c1 3300050507 Bacteria 14559
133 nmdc:mga05p37_9383_c1 3300050507 Bacteria 11580
134 nmdc:mga09592_130810_c1 3300050508 Bacteria 2159
135 nmdc:mga09592_237066_c1 3300050508 Bacteria 1580
136 nmdc:mga08y16_19774_c1 3300050511 Bacteria 7100
137 nmdc:mga0n895_198638_c1 3300050512 Bacteria 2037
138 nmdc:mga0n895_311531_c1 3300050512 Bacteria 1595
139 nmdc:mga0rr50_87_c1 3300050513 Bacteria 52403
140 nmdc:mga0a205_438007_c1 3300050515 Bacteria 1168
141 nmdc:mga0a205_96365_c1 3300050515 Bacteria 2857
142 Ga0495601_0000134 3300053077 Bacteria 41980
143 Ga0495601_0021396 3300053077 Bacteria 3961

MSA Aligner

Family Sequences

Sample Scaffold Protein Protein Length
1 3300025931 Ga0207644_10909536 Ga0207644_109095361 182
2 3300048907 Ga0496104_0000462 Ga0496104_0000462_2207_2905 196
3 3300048908 Ga0496105_0000101 Ga0496105_0000101_22400_23098 196
4 3300053077 Ga0495601_0021396 Ga0495601_0021396_430_1128 196
5 3300046689 Ga0495613_0000565 Ga0495613_0000565_27632_28327 199
6 3300035242 Ga0373962_0136621 Ga0373962_0136621_75_767 200
7 3300047317 Ga0495604_0010984 Ga0495604_0010984_962_1657 202
8 3300048088 Ga0495602_0000055 Ga0495602_0000055_31778_32473 202
9 3300048917 Ga0496114_0033405 Ga0496114_0033405_2772_3596 202
10 iso_pu_bacteria 2857357740 2857365541 202
11 3300026118 Ga0207675_100276952 Ga0207675_1002769522 203
12 3300006173 Ga0070716_100402924 Ga0070716_1004029241 209
13 3300005842 Ga0068858_100353696 Ga0068858_1003536961 210
14 3300009553 Ga0105249_10111253 Ga0105249_101112532 210
15 3300013306 Ga0163162_10411504 Ga0163162_104115042 210
16 3300048905 Ga0496102_0239788 Ga0496102_0239788_650_1384 210
17 3300005548 Ga0070665_100426353 Ga0070665_1004263532 213
18 3300045051 Ga0451576_0534070 Ga0451576_0534070_52_828 213
19 3300009147 Ga0114129_10423299 Ga0114129_104232993 214
20 3300050507 nmdc:mga05p37_234583_c1 nmdc:mga05p37_234583_c1_537_1331 214
21 3300044694 Ga0466963_0040386 Ga0466963_0040386_2236_3039 215
22 3300045976 Ga0466967_0251702 Ga0466967_0251702_312_1115 215
23 3300005329 Ga0070683_100448624 Ga0070683_1004486241 216
24 3300005564 Ga0070664_100392122 Ga0070664_1003921222 216
25 3300025944 Ga0207661_10408841 Ga0207661_104088412 216
26 3300025945 Ga0207679_10188702 Ga0207679_101887022 216
27 3300049587 Ga0501071_0138929 Ga0501071_0138929_824_1627 218
28 3300005840 Ga0068870_10282129 Ga0068870_102821292 220
29 3300009147 Ga0114129_10194123 Ga0114129_101941234 221
30 3300005719 Ga0068861_100310521 Ga0068861_1003105212 222
31 3300009176 Ga0105242_10000427 Ga0105242_1000042723 222
32 3300025934 Ga0207686_10000061 Ga0207686_1000006118 222
33 3300026035 Ga0207703_10664350 Ga0207703_106643501 222
34 3300045976 Ga0466967_0578504 Ga0466967_0578504_150_944 222
35 3300005366 Ga0070659_100350054 Ga0070659_1003500541 223
36 3300005544 Ga0070686_100014869 Ga0070686_1000148694 223
37 3300005578 Ga0068854_100005948 Ga0068854_1000059484 223
38 3300006852 Ga0075433_10160940 Ga0075433_101609402 223
39 3300006871 Ga0075434_100759847 Ga0075434_1007598471 223
40 3300007076 Ga0075435_100147166 Ga0075435_1001471662 223
41 3300009093 Ga0105240_10147546 Ga0105240_101475462 223
42 3300009147 Ga0114129_10003110 Ga0114129_1000311019 223
43 3300025932 Ga0207690_10313572 Ga0207690_103135721 223
44 3300025949 Ga0207667_10333329 Ga0207667_103333292 223
45 3300025981 Ga0207640_10005970 Ga0207640_100059703 223
46 3300048909 Ga0496106_0335897 Ga0496106_0335897_154_960 223
47 3300048910 Ga0496107_0150305 Ga0496107_0150305_533_1339 223
48 3300050507 nmdc:mga05p37_9383_c1 nmdc:mga05p37_9383_c1_7910_8731 223
49 3300050515 nmdc:mga0a205_96365_c1 nmdc:mga0a205_96365_c1_1683_2504 223
50 3300005328 Ga0070676_10162262 Ga0070676_101622622 224
51 3300005340 Ga0070689_100054441 Ga0070689_1000544412 224
52 3300006237 Ga0097621_100276455 Ga0097621_1002764552 224
53 3300006844 Ga0075428_100062731 Ga0075428_1000627314 224
54 3300006880 Ga0075429_100273736 Ga0075429_1002737362 224
55 3300006880 Ga0075429_100389711 Ga0075429_1003897112 224
56 3300009147 Ga0114129_10051932 Ga0114129_100519325 224
57 3300009177 Ga0105248_10338195 Ga0105248_103381952 224
58 3300050507 nmdc:mga05p37_145888_c1 nmdc:mga05p37_145888_c1_1519_2322 224
59 3300050508 nmdc:mga09592_130810_c1 nmdc:mga09592_130810_c1_838_1641 224
60 3300050508 nmdc:mga09592_237066_c1 nmdc:mga09592_237066_c1_694_1497 224
61 3300005353 Ga0070669_100049044 Ga0070669_1000490444 225
62 3300005354 Ga0070675_100008344 Ga0070675_1000083443 225
63 3300005441 Ga0070700_100034782 Ga0070700_1000347822 225
64 3300005844 Ga0068862_100047845 Ga0068862_1000478454 225
65 3300009098 Ga0105245_10810595 Ga0105245_108105951 225
66 3300026075 Ga0207708_10055663 Ga0207708_100556633 225
67 3300028380 Ga0268265_10023637 Ga0268265_100236373 225
68 3300045976 Ga0466967_0000019 Ga0466967_0000019_64681_65475 225
69 3300006042 Ga0075368_10143104 Ga0075368_101431041 226
70 3300006178 Ga0075367_10009657 Ga0075367_100096571 226
71 3300006195 Ga0075366_10284974 Ga0075366_102849741 226
72 3300025885 Ga0207653_10098716 Ga0207653_100987162 226
73 3300025940 Ga0207691_10451859 Ga0207691_104518592 226
74 3300050493 nmdc:mga0k408_7523_c1 nmdc:mga0k408_7523_c1_3682_4467 226
75 3300050495 nmdc:mga04h51_115425_c1 nmdc:mga04h51_115425_c1_186_971 226
76 3300005844 Ga0068862_100095059 Ga0068862_1000950594 227
77 3300006163 Ga0070715_10000001 Ga0070715_10000001594 227
78 3300013104 Ga0157370_10589569 Ga0157370_105895692 227
79 3300025905 Ga0207685_10000005 Ga0207685_10000005138 227
80 3300028380 Ga0268265_10326281 Ga0268265_103262812 227
81 3300050512 nmdc:mga0n895_311531_c1 nmdc:mga0n895_311531_c1_551_1339 227
82 3300005544 Ga0070686_100129284 Ga0070686_1001292842 228
83 3300005578 Ga0068854_100229152 Ga0068854_1002291522 228
84 3300005843 Ga0068860_100044899 Ga0068860_1000448992 228
85 3300009098 Ga0105245_10007302 Ga0105245_100073024 228
86 3300025927 Ga0207687_10000412 Ga0207687_100004124 228
87 3300025941 Ga0207711_10299195 Ga0207711_102991952 228
88 3300025981 Ga0207640_10071985 Ga0207640_100719853 228
89 3300026118 Ga0207675_100279511 Ga0207675_1002795113 228
90 3300028381 Ga0268264_10032910 Ga0268264_100329104 228
91 3300050512 nmdc:mga0n895_198638_c1 nmdc:mga0n895_198638_c1_266_1072 228
92 3300050513 nmdc:mga0rr50_87_c1 nmdc:mga0rr50_87_c1_22361_23167 228
93 3300005328 Ga0070676_10058182 Ga0070676_100581823 229
94 3300005341 Ga0070691_10025703 Ga0070691_100257032 229
95 3300005353 Ga0070669_100021699 Ga0070669_1000216991 229
96 3300005438 Ga0070701_10053688 Ga0070701_100536883 229
97 3300005441 Ga0070700_100008685 Ga0070700_1000086855 229
98 3300005444 Ga0070694_100026776 Ga0070694_1000267763 229
99 3300005444 Ga0070694_100052351 Ga0070694_1000523514 229
100 3300005444 Ga0070694_100402625 Ga0070694_1004026251 229
101 3300005459 Ga0068867_100046454 Ga0068867_1000464542 229
102 3300005468 Ga0070707_100059359 Ga0070707_1000593594 229
103 3300005545 Ga0070695_100024418 Ga0070695_1000244184 229
104 3300005549 Ga0070704_100004225 Ga0070704_1000042254 229
105 3300005719 Ga0068861_100000304 Ga0068861_1000003048 229
106 3300006852 Ga0075433_10034977 Ga0075433_100349774 229
107 3300009147 Ga0114129_10019938 Ga0114129_100199385 229
108 3300009147 Ga0114129_10335464 Ga0114129_103354643 229
109 3300025907 Ga0207645_10050856 Ga0207645_100508563 229
110 3300025922 Ga0207646_10014032 Ga0207646_100140324 229
111 3300025923 Ga0207681_10398435 Ga0207681_103984352 229
112 3300026075 Ga0207708_10016496 Ga0207708_100164965 229
113 3300026089 Ga0207648_10007771 Ga0207648_100077718 229
114 3300026118 Ga0207675_100000688 Ga0207675_10000068814 229
115 3300050507 nmdc:mga05p37_32593_c1 nmdc:mga05p37_32593_c1_5281_6075 229
116 3300050515 nmdc:mga0a205_438007_c1 nmdc:mga0a205_438007_c1_255_1049 229
117 3300005406 Ga0070703_10060155 Ga0070703_100601552 230
118 3300005530 Ga0070679_100179353 Ga0070679_1001793533 230
119 3300010375 Ga0105239_10071992 Ga0105239_100719922 230
120 3300025921 Ga0207652_10145919 Ga0207652_101459193 230
121 3300053077 Ga0495601_0000134 Ga0495601_0000134_3225_4031 231
122 3300009147 Ga0114129_10059950 Ga0114129_100599504 232
123 3300014326 Ga0157380_10078566 Ga0157380_100785662 232
124 3300049590 Ga0501074_0023949 Ga0501074_0023949_1876_2721 232
125 3300050507 nmdc:mga05p37_4159_c1 nmdc:mga05p37_4159_c1_11592_12395 232
126 iso_pu_bacteria 2599185353 2600199675 232
127 iso_pu_bacteria 2600254943 2600402748 232
128 3300005364 Ga0070673_100003830 Ga0070673_1000038308 233
129 3300025960 Ga0207651_10000436 Ga0207651_1000043617 233
130 3300045976 Ga0466967_0339293 Ga0466967_0339293_636_1442 233
131 3300047321 Ga0495676_0224830 Ga0495676_0224830_234_1046 233
132 3300049586 Ga0501070_0302608 Ga0501070_0302608_18_851 233
133 3300028563 Ga0265319_1000073 Ga0265319_100007375 235
134 3300028654 Ga0265322_10033099 Ga0265322_100330992 235
135 3300028800 Ga0265338_10000464 Ga0265338_1000046453 235
136 3300029957 Ga0265324_10057373 Ga0265324_100573732 235
137 3300031241 Ga0265325_10026549 Ga0265325_100265492 235
138 3300049585 Ga0501069_0055556 Ga0501069_0055556_1327_2172 236
139 3300005330 Ga0070690_100317888 Ga0070690_1003178881 237
140 3300005981 Ga0081538_10034307 Ga0081538_100343072 237
141 3300049571 Ga0501034_0169137 Ga0501034_0169137_969_1814 237
142 3300050490 nmdc:mga03n38_49061_c1 nmdc:mga03n38_49061_c1_652_1497 239
143 3300009094 Ga0111539_10051420 Ga0111539_100514204 241
144 3300027907 Ga0207428_10142930 Ga0207428_101429302 241
145 3300050511 nmdc:mga08y16_19774_c1 nmdc:mga08y16_19774_c1_3172_4002 241
146 3300001977 JGI24746J21847_1000721 JGI24746J21847_10007215 250

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08543

Phos_pyr_kin

Phosphomethylpyrimidine kinase

11

255

0.98

PF00294

PfkB

pfkB family carbohydrate kinase

33

243

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
4jjp-assembly1.cif.gz_A 2.06 angstrom resolution crystal structure of phosphomethylpyrimidine kinase (thid)from clostridium difficile 630 0.8416 15 218
7r8y-assembly1.cif.gz_A ancestral protein ancthen of phosphomethylpyrimidine kinases family 0.8394 12 219
4yl5-assembly1.cif.gz_A-2 structure of a putative phosphomethylpyrimidine kinase from acinetobacter baumannii 0.83 12 214
2i5b-assembly2.cif.gz_D the crystal structure of an adp complex of bacillus subtilis pyridoxal kinase provides evidence for the parralel emergence of enzyme activity during evolution 0.8108 12 212
4ywr-assembly1.cif.gz_A structure of a putative phosphomethylpyrimidine kinase from acinetobacter baumannii in non-covalent complex with pyridoxal phosphate 0.808 12 214
ID Description Score Start End Superfamily
4yl5A00 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase 0.83 12 214 3.40.1190.20
af_O94266_18_315_3.40.1190.20 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase 0.8263 12 219 3.40.1190.20
4jjpB00 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase 0.8045 15 213 3.40.1190.20
2i5bB00 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase 0.792 12 212 3.40.1190.20
af_Q8I3Q5_1_307_3.40.1190.20 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase 0.7914 8 210 3.40.1190.20
ID Description Score Start End GO Terms
AF-A0A0F9GHU9-F1-model_v4 Pyridoxamine kinase/Phosphomethylpyrimidine kinase domain-containing protein 0.8951 50 220 GO:0005829
GO:0008902
GO:0008972
GO:0009228
AF-A0A2H0PHE1-F1-model_v4 hydroxymethylpyrimidine kinase (EC 2.7.1.49) 0.8948 62 212 GO:0005829
GO:0008902
GO:0008972
GO:0009228
GO:0009229
AF-A0A7R9YLA1-F1-model_v4 Pyridoxamine kinase/Phosphomethylpyrimidine kinase domain-containing protein 0.8943 57 186 GO:0005829
GO:0008902
GO:0008972
GO:0009228
AF-A0A1V6C9I6-F1-model_v4 hydroxymethylpyrimidine kinase (EC 2.7.1.49) 0.8867 50 220 GO:0005829
GO:0008902
GO:0008972
GO:0009228
GO:0009229
AF-A0A378EC00-F1-model_v4 deleted 0.8826 68 188

Feature Viewer

pLDDT pTM Quality
72.5 0.76 High
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Predicted Structure (AlphaFold2)

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