F197068

General Info

Members Datasets Scaffolds Average Seq Length
146 97 146 361

Family's Representative Sequence

Representative Sequence 3300005614|Ga0068856_100001741|Ga0068856_1000017412
Length 412
Sequence VSPPFFYSYPGSADILVRGPRVEGAAFTLDHPNRFLSDKTFFPTSSFRSVPLSTDLFDFDLPSELIAQHPAERRDASRLLVVRRQERRWEHRVFSDLPEYLSASDRLFRNNAAVLPARLSAQRASGGAVECLLLRPAAASTARAGIDQMWWVLLRPGRKLPIGAKFFSDSFTGEVFEKEEDGTALVGFTTAENEPISDVAARVGAVPLPPYILREGTDAERAEDLARYQTVYADLQKRVAAAAPTAGLHFTPELLNRLSGQGVQTENITLHVGLGTFKPIATTEVEAHAIHRETYELPRETQQALFDRSKRRIAVGTTSVRSIEAFLSQNRAPLSGPFLGEASIFIYPPYAFRGVDALITNFHQPRSTLLCLVSAFLSPGQTDGIAWLQEIYRDAIRLKYRFFSYGDAMLIL

Samples

Sample ID Description Type Environment
1 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
5 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
6 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
7 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
8 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
9 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
10 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
11 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
12 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
13 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
14 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
15 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
16 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
17 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
18 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
19 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
20 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
21 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
22 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
23 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
24 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
34 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
35 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
36 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
37 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
38 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
39 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
40 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
41 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
42 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
43 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
44 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
45 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
46 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
47 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
48 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
49 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
50 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
51 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
52 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
53 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
54 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
55 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
56 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
57 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
58 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
59 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
60 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
61 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
62 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
63 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
64 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
65 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
66 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
67 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
68 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
69 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
70 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
71 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
72 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
73 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
74 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
75 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
76 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
77 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
78 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
79 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
80 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
81 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
82 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
83 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
84 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
85 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
86 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
87 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
88 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
89 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
90 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
91 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
92 3300059423 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 8_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
93 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
94 3300059426 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 11_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
95 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
96 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
97 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.16
Nodule 0
Rhizoplane 0
Rhizosphere 90.41
Stem 0
Stem Tuber 0
Unclassified 3.42

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10000322 3300003320 Bacteria 12738
2 rootH2_10002771 3300003320 Bacteria 19707
3 rootH1_10180397 3300003323 Bacteria 1278
4 Ga0070683_100262701 3300005329 Bacteria 1642
5 Ga0068869_100000381 3300005334 Bacteria 24096
6 Ga0070713_100011838 3300005436 Bacteria 6374
7 Ga0070694_100037473 3300005444 Bacteria 3216
8 Ga0070699_100006471 3300005518 Bacteria 10203
9 Ga0070679_100041839 3300005530 Bacteria 4561
10 Ga0070697_100049295 3300005536 Bacteria 3418
11 Ga0070696_100000609 3300005546 Bacteria 22984
12 Ga0070665_100069418 3300005548 Bacteria 3531
13 Ga0070665_100493435 3300005548 Bacteria 1236
14 Ga0070704_100088828 3300005549 Bacteria 2297
15 Ga0068856_100001741 3300005614 Bacteria 22740
16 Ga0075364_10015225 3300006051 Bacteria 4766
17 Ga0070712_100039902 3300006175 Bacteria 3215
18 Ga0075369_10002176 3300006186 Bacteria 6925
19 Ga0075366_10021840 3300006195 Bacteria 3720
20 Ga0075430_100230911 3300006846 Bacteria 1534
21 Ga0075434_100296648 3300006871 Bacteria 1636
22 Ga0068865_100001179 3300006881 Bacteria 15190
23 Ga0105240_10004736 3300009093 Bacteria 20539
24 Ga0105240_10045854 3300009093 Bacteria 5543
25 Ga0163163_10144294 3300014325 Bacteria 2424
26 Ga0213876_10002993 3300021384 Bacteria 9782
27 Ga0207695_10019283 3300025913 Bacteria 7855
28 Ga0207693_10098620 3300025915 Unclassified 2291
29 Ga0207652_10029854 3300025921 Bacteria 4562
30 Ga0207700_10009145 3300025928 Bacteria 6171
31 Ga0207704_10001668 3300025938 Bacteria 9960
32 Ga0207689_10003877 3300025942 Bacteria 13628
33 Ga0207661_10243943 3300025944 Bacteria 1595
34 Ga0207667_10062908 3300025949 Unclassified 3879
35 Ga0207677_10002550 3300026023 Bacteria 9564
36 Ga0207702_10000137 3300026078 Bacteria 88042
37 Ga0265337_1025631 3300028556 Bacteria 1794
38 Ga0265319_1001049 3300028563 Bacteria 17234
39 Ga0265319_1002076 3300028563 Bacteria 11238
40 Ga0265319_1002755 3300028563 Bacteria 9429
41 Ga0265319_1004558 3300028563 Bacteria 6830
42 Ga0265319_1008238 3300028563 Bacteria 4590
43 Ga0265319_1018481 3300028563 Bacteria 2623
44 Ga0265319_1024155 3300028563 Bacteria 2191
45 Ga0265334_10000345 3300028573 Bacteria 24834
46 Ga0265318_10000002 3300028577 Bacteria 428208
47 Ga0265318_10000978 3300028577 Bacteria 18306
48 Ga0265318_10002219 3300028577 Bacteria 10482
49 Ga0265318_10006029 3300028577 Bacteria 5623
50 Ga0265323_10002687 3300028653 Bacteria 8029
51 Ga0265323_10014912 3300028653 Bacteria 3065
52 Ga0265322_10000654 3300028654 Bacteria 12995
53 Ga0265322_10029669 3300028654 Bacteria 1562
54 Ga0265338_10000619 3300028800 Bacteria 61997
55 Ga0265324_10005983 3300029957 Bacteria 5151
56 Ga0265324_10060993 3300029957 Bacteria 1289
57 Ga0265330_10028350 3300031235 Bacteria 2525
58 Ga0265320_10000394 3300031240 Bacteria 35351
59 Ga0265320_10000431 3300031240 Bacteria 33083
60 Ga0265320_10001682 3300031240 Bacteria 15726
61 Ga0265320_10001703 3300031240 Bacteria 15624
62 Ga0265320_10001907 3300031240 Bacteria 14725
63 Ga0265320_10027387 3300031240 Bacteria 2972
64 Ga0265320_10027458 3300031240 Bacteria 2967
65 Ga0265320_10073358 3300031240 Bacteria 1608
66 Ga0265320_10116846 3300031240 Bacteria 1219
67 Ga0265325_10000270 3300031241 Bacteria 36987
68 Ga0265340_10007411 3300031247 Bacteria 5954
69 Ga0265339_10048027 3300031249 Bacteria 2342
70 Ga0265331_10064768 3300031250 Bacteria 1720
71 Ga0265327_10000092 3300031251 Bacteria 195619
72 Ga0265327_10000555 3300031251 Bacteria 63987
73 Ga0265316_10008848 3300031344 Bacteria 9298
74 Ga0265316_10021132 3300031344 Bacteria 5523
75 Ga0265316_10025535 3300031344 Bacteria 4928
76 Ga0265316_10027664 3300031344 Bacteria 4690
77 Ga0265316_10041069 3300031344 Bacteria 3705
78 Ga0265316_10072598 3300031344 Bacteria 2651
79 Ga0265316_10156457 3300031344 Bacteria 1705
80 Ga0307408_100000007 3300031548 Bacteria 463086
81 Ga0265313_10000294 3300031595 Bacteria 54470
82 Ga0265313_10002081 3300031595 Bacteria 17894
83 Ga0265313_10002132 3300031595 Bacteria 17585
84 Ga0265313_10003273 3300031595 Bacteria 13305
85 Ga0265313_10003407 3300031595 Bacteria 12886
86 Ga0265313_10004033 3300031595 Bacteria 11465
87 Ga0265314_10027223 3300031711 Bacteria 4283
88 Ga0265314_10070913 3300031711 Bacteria 2333
89 Ga0265342_10004395 3300031712 Bacteria 11124
90 Ga0265342_10014381 3300031712 Bacteria 5255
91 Ga0265342_10014849 3300031712 Bacteria 5153
92 Ga0265342_10058477 3300031712 Bacteria 2278
93 Ga0265342_10104573 3300031712 Bacteria 1609
94 Ga0316576_10140069 3300031727 Bacteria 1821
95 Ga0316577_10049537 3300031733 Bacteria 2344
96 Ga0307410_10000172 3300031852 Bacteria 23629
97 Ga0373945_0051001 3300035116 Bacteria 1522
98 Ga0316574_0080225 3300035398 Bacteria 2071
99 Ga0316582_0093151 3300036647 Bacteria 1986
100 Ga0316584_0005321 3300036712 Bacteria 8620
101 Ga0395905_0000010 3300037471 Bacteria 460729
102 Ga0436365_0848748 3300039437 Bacteria 12101
103 Ga0436362_0235152 3300039453 Bacteria 1648
104 Ga0451577_0003000 3300042876 Bacteria 19232
105 Ga0451577_0071117 3300042876 Bacteria 3102
106 Ga0451577_0103541 3300042876 Bacteria 2544
107 Ga0451577_0137540 3300042876 Bacteria 2194
108 Ga0466969_0000335 3300044656 Bacteria 26089
109 Ga0466965_0013035 3300044683 Bacteria 3916
110 Ga0466961_0030320 3300044693 Bacteria 3475
111 Ga0453684_0000001 3300044712 Bacteria 2623166
112 Ga0453684_0000192 3300044712 Bacteria 266757
113 Ga0466971_0046860 3300044719 Bacteria 1942
114 Ga0466968_0048293 3300044735 Bacteria 1811
115 Ga0466957_0015257 3300044842 Bacteria 4487
116 Ga0451576_0000214 3300045051 Bacteria 144183
117 Ga0451576_0034538 3300045051 Bacteria 5369
118 Ga0466967_0201802 3300045976 Bacteria 1884
119 Ga0501032_0000281 3300049569 Bacteria 43046
120 Ga0501034_0254821 3300049571 Bacteria 1699
121 Ga0501034_0369567 3300049571 Bacteria 1360
122 Ga0501036_0052898 3300049572 Bacteria 3439
123 Ga0501046_0019023 3300049580 Bacteria 5700
124 Ga0501046_0094284 3300049580 Bacteria 2300
125 Ga0501070_0454769 3300049586 Bacteria 1032
126 Ga0501072_0341267 3300049588 Bacteria 1190
127 Ga0501074_0287166 3300049590 Bacteria 1169
128 Ga0501075_0218884 3300049591 Bacteria 1452
129 Ga0501083_0002539 3300049744 Bacteria 12530
130 Ga0501083_0003040 3300049744 Bacteria 11664
131 Ga0501035_0000478 3300049822 Bacteria 44866
132 Ga0501044_0000781 3300049823 Bacteria 38616
133 nmdc:mga00v17_13267_c1 3300050491 Bacteria 4569
134 nmdc:mga0k408_179482_c1 3300050493 Bacteria 1263
135 Ga0500641_0075286 3300053096 Bacteria 1426
136 Ga0500568_0007550 3300053139 Bacteria 5322
137 Ga0500588_0005082 3300053146 Bacteria 2899
138 Ga0500622_0014614 3300053156 Bacteria 4211
139 Ga0590071_000091 3300059421 Bacteria 24990
140 Ga0590074_001351 3300059423 Bacteria 3924
141 Ga0590075_000045 3300059424 Bacteria 32673
142 Ga0590077_000918 3300059426 Bacteria 7505
143 Ga0501082_0220571 3300060353 Bacteria 1650
144 Ga0466962_0010786 3300061719 Bacteria 4391
145 Ga0466962_0099180 3300061719 Bacteria 1398
146 Ga0530510_0013948 3300061734 Bacteria 5662

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049572 Ga0501036_0052898 Ga0501036_0052898_863_1804 297
2 3300053096 Ga0500641_0075286 Ga0500641_0075286_451_1386 304
3 3300021384 Ga0213876_10002993 Ga0213876_100029933 305
4 3300049586 Ga0501070_0454769 Ga0501070_0454769_24_1022 326
5 3300009093 Ga0105240_10045854 Ga0105240_100458544 331
6 3300042876 Ga0451577_0003000 Ga0451577_0003000_5629_6744 331
7 3300061734 Ga0530510_0013948 Ga0530510_0013948_1552_2604 332
8 3300005548 Ga0070665_100069418 Ga0070665_1000694184 334
9 3300006051 Ga0075364_10015225 Ga0075364_100152257 334
10 3300006186 Ga0075369_10002176 Ga0075369_100021764 334
11 3300006195 Ga0075366_10021840 Ga0075366_100218405 334
12 3300035116 Ga0373945_0051001 Ga0373945_0051001_447_1469 334
13 3300037471 Ga0395905_0000010 Ga0395905_0000010_356115_357272 334
14 3300050491 nmdc:mga00v17_13267_c1 nmdc:mga00v17_13267_c1_2140_3165 334
15 3300050493 nmdc:mga0k408_179482_c1 nmdc:mga0k408_179482_c1_170_1195 334
16 3300044656 Ga0466969_0000335 Ga0466969_0000335_13929_14981 335
17 3300044683 Ga0466965_0013035 Ga0466965_0013035_670_1722 335
18 3300044693 Ga0466961_0030320 Ga0466961_0030320_1694_2746 335
19 3300044719 Ga0466971_0046860 Ga0466971_0046860_448_1500 335
20 3300044842 Ga0466957_0015257 Ga0466957_0015257_1072_2124 335
21 3300045976 Ga0466967_0201802 Ga0466967_0201802_570_1622 335
22 3300049571 Ga0501034_0254821 Ga0501034_0254821_502_1587 335
23 3300061719 Ga0466962_0010786 Ga0466962_0010786_2610_3662 335
24 3300005444 Ga0070694_100037473 Ga0070694_1000374732 336
25 3300005518 Ga0070699_100006471 Ga0070699_10000647110 336
26 3300005536 Ga0070697_100049295 Ga0070697_1000492953 336
27 3300005546 Ga0070696_100000609 Ga0070696_10000060913 336
28 3300005549 Ga0070704_100088828 Ga0070704_1000888282 336
29 3300006871 Ga0075434_100296648 Ga0075434_1002966482 336
30 3300009093 Ga0105240_10004736 Ga0105240_1000473617 337
31 3300025913 Ga0207695_10019283 Ga0207695_100192834 337
32 3300025949 Ga0207667_10062908 Ga0207667_100629084 337
33 3300005436 Ga0070713_100011838 Ga0070713_1000118384 338
34 3300006175 Ga0070712_100039902 Ga0070712_1000399024 338
35 3300025915 Ga0207693_10098620 Ga0207693_100986202 338
36 3300025928 Ga0207700_10009145 Ga0207700_100091454 338
37 3300031733 Ga0316577_10049537 Ga0316577_100495372 339
38 3300035398 Ga0316574_0080225 Ga0316574_0080225_133_1197 339
39 3300036647 Ga0316582_0093151 Ga0316582_0093151_260_1324 339
40 3300036712 Ga0316584_0005321 Ga0316584_0005321_3155_4219 339
41 3300039437 Ga0436365_0848748 Ga0436365_0848748_5451_6593 340
42 3300039453 Ga0436362_0235152 Ga0436362_0235152_298_1452 340
43 3300049588 Ga0501072_0341267 Ga0501072_0341267_37_1083 341
44 3300049590 Ga0501074_0287166 Ga0501074_0287166_54_1100 341
45 3300049591 Ga0501075_0218884 Ga0501075_0218884_383_1429 341
46 3300060353 Ga0501082_0220571 Ga0501082_0220571_543_1589 341
47 3300031727 Ga0316576_10140069 Ga0316576_101400692 343
48 3300049571 Ga0501034_0369567 Ga0501034_0369567_258_1334 343
49 3300005548 Ga0070665_100493435 Ga0070665_1004934351 344
50 3300042876 Ga0451577_0071117 Ga0451577_0071117_1879_2955 346
51 3300044712 Ga0453684_0000192 Ga0453684_0000192_56716_57792 346
52 3300059421 Ga0590071_000091 Ga0590071_000091_7494_8573 347
53 3300059423 Ga0590074_001351 Ga0590074_001351_699_1778 347
54 3300059424 Ga0590075_000045 Ga0590075_000045_14417_15496 347
55 3300059426 Ga0590077_000918 Ga0590077_000918_4580_5659 347
56 3300028573 Ga0265334_10000345 Ga0265334_100003454 349
57 3300028577 Ga0265318_10000002 Ga0265318_10000002116 349
58 3300029957 Ga0265324_10005983 Ga0265324_100059832 349
59 3300031250 Ga0265331_10064768 Ga0265331_100647682 349
60 3300006846 Ga0075430_100230911 Ga0075430_1002309112 350
61 3300028563 Ga0265319_1018481 Ga0265319_10184811 350
62 3300031240 Ga0265320_10116846 Ga0265320_101168461 350
63 3300031344 Ga0265316_10021132 Ga0265316_100211324 350
64 3300031712 Ga0265342_10104573 Ga0265342_101045732 350
65 3300028556 Ga0265337_1025631 Ga0265337_10256312 352
66 3300028563 Ga0265319_1004558 Ga0265319_10045586 352
67 3300031240 Ga0265320_10027458 Ga0265320_100274583 352
68 3300031595 Ga0265313_10004033 Ga0265313_100040332 352
69 3300005530 Ga0070679_100041839 Ga0070679_1000418392 354
70 3300014325 Ga0163163_10144294 Ga0163163_101442941 354
71 3300025921 Ga0207652_10029854 Ga0207652_100298545 354
72 3300028563 Ga0265319_1024155 Ga0265319_10241552 354
73 3300028654 Ga0265322_10000654 Ga0265322_100006544 354
74 3300028654 Ga0265322_10029669 Ga0265322_100296691 354
75 3300031251 Ga0265327_10000092 Ga0265327_10000092175 354
76 3300031344 Ga0265316_10027664 Ga0265316_100276642 354
77 3300031712 Ga0265342_10014849 Ga0265342_100148495 354
78 3300042876 Ga0451577_0103541 Ga0451577_0103541_1239_2357 354
79 3300044712 Ga0453684_0000001 Ga0453684_0000001_1790094_1791212 354
80 3300044735 Ga0466968_0048293 Ga0466968_0048293_684_1781 354
81 3300045051 Ga0451576_0000214 Ga0451576_0000214_100936_102066 354
82 3300045051 Ga0451576_0034538 Ga0451576_0034538_3814_4944 354
83 3300049744 Ga0501083_0002539 Ga0501083_0002539_11282_12382 354
84 3300049744 Ga0501083_0003040 Ga0501083_0003040_8950_10050 354
85 3300031240 Ga0265320_10000431 Ga0265320_100004318 355
86 3300005334 Ga0068869_100000381 Ga0068869_10000038117 356
87 3300006881 Ga0068865_100001179 Ga0068865_1000011798 356
88 3300025938 Ga0207704_10001668 Ga0207704_100016683 356
89 3300025942 Ga0207689_10003877 Ga0207689_100038778 356
90 3300026023 Ga0207677_10002550 Ga0207677_100025505 356
91 3300028563 Ga0265319_1001049 Ga0265319_10010494 356
92 3300028577 Ga0265318_10000978 Ga0265318_1000097814 356
93 3300028653 Ga0265323_10002687 Ga0265323_100026872 356
94 3300028653 Ga0265323_10014912 Ga0265323_100149121 356
95 3300031235 Ga0265330_10028350 Ga0265330_100283502 356
96 3300031240 Ga0265320_10001703 Ga0265320_100017039 356
97 3300031344 Ga0265316_10041069 Ga0265316_100410694 356
98 3300031344 Ga0265316_10072598 Ga0265316_100725982 356
99 3300031344 Ga0265316_10156457 Ga0265316_101564572 356
100 3300031548 Ga0307408_100000007 Ga0307408_1000000073 356
101 3300031595 Ga0265313_10003273 Ga0265313_100032739 356
102 3300031711 Ga0265314_10027223 Ga0265314_100272235 356
103 3300031852 Ga0307410_10000172 Ga0307410_1000017210 356
104 3300028563 Ga0265319_1002755 Ga0265319_10027558 357
105 3300028577 Ga0265318_10002219 Ga0265318_100022198 357
106 3300028577 Ga0265318_10006029 Ga0265318_100060294 357
107 3300028800 Ga0265338_10000619 Ga0265338_1000061948 357
108 3300029957 Ga0265324_10060993 Ga0265324_100609932 357
109 3300031240 Ga0265320_10000394 Ga0265320_100003945 357
110 3300031240 Ga0265320_10073358 Ga0265320_100733582 357
111 3300031241 Ga0265325_10000270 Ga0265325_1000027032 357
112 3300031247 Ga0265340_10007411 Ga0265340_100074113 357
113 3300031249 Ga0265339_10048027 Ga0265339_100480273 357
114 3300031344 Ga0265316_10025535 Ga0265316_100255354 357
115 3300031595 Ga0265313_10000294 Ga0265313_100002949 357
116 3300031595 Ga0265313_10002132 Ga0265313_1000213212 357
117 3300031711 Ga0265314_10070913 Ga0265314_100709132 357
118 3300031712 Ga0265342_10014381 Ga0265342_100143816 357
119 3300031712 Ga0265342_10058477 Ga0265342_100584773 357
120 3300028563 Ga0265319_1008238 Ga0265319_10082384 358
121 3300031240 Ga0265320_10001907 Ga0265320_1000190712 358
122 3300003320 rootH2_10002771 rootH2_100027719 360
123 3300003323 rootH1_10180397 rootH1_101803971 360
124 3300005614 Ga0068856_100001741 Ga0068856_1000017412 360
125 3300026078 Ga0207702_10000137 Ga0207702_1000013732 360
126 3300031595 Ga0265313_10003407 Ga0265313_100034079 360
127 3300061719 Ga0466962_0099180 Ga0466962_0099180_71_1162 360
128 3300031251 Ga0265327_10000555 Ga0265327_1000055510 362
129 3300028563 Ga0265319_1002076 Ga0265319_10020761 363
130 3300031240 Ga0265320_10001682 Ga0265320_100016828 363
131 3300031344 Ga0265316_10008848 Ga0265316_100088481 363
132 3300031595 Ga0265313_10002081 Ga0265313_100020816 363
133 3300031712 Ga0265342_10004395 Ga0265342_100043955 363
134 3300005329 Ga0070683_100262701 Ga0070683_1002627011 364
135 3300025944 Ga0207661_10243943 Ga0207661_102439432 364
136 3300031240 Ga0265320_10027387 Ga0265320_100273872 364
137 3300049569 Ga0501032_0000281 Ga0501032_0000281_29559_30683 364
138 3300049580 Ga0501046_0019023 Ga0501046_0019023_448_1572 364
139 3300049580 Ga0501046_0094284 Ga0501046_0094284_968_2092 364
140 3300049822 Ga0501035_0000478 Ga0501035_0000478_22859_23983 364
141 3300049823 Ga0501044_0000781 Ga0501044_0000781_34686_35810 364
142 3300053139 Ga0500568_0007550 Ga0500568_0007550_3742_4842 364
143 3300053146 Ga0500588_0005082 Ga0500588_0005082_1640_2827 364
144 3300053156 Ga0500622_0014614 Ga0500622_0014614_2121_3221 364
145 3300042876 Ga0451577_0137540 Ga0451577_0137540_1008_2141 377
146 3300003320 rootH2_10000322 rootH2_100003224 393

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02547

Queuosine_synth

Queuosine biosynthesis protein

54

411

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
1vpz-assembly1.cif.gz_A crystal structure of a putative carbon storage regulator protein (csra, pa0905) from pseudomonas aeruginosa at 2.05 a resolution 0.802 142 174
1vpz-assembly1.cif.gz_B crystal structure of a putative carbon storage regulator protein (csra, pa0905) from pseudomonas aeruginosa at 2.05 a resolution 0.7927 142 174
2bti-assembly1.cif.gz_A structure-function studies of the rmsa csra post-transcriptional global regulator protein family reveals a class of rna-binding structure 0.7791 142 174
5z38-assembly1.cif.gz_H crystal structure of csra bound to cest 0.776 142 174
2p13-assembly1.cif.gz_B transporter associated domain corc_hlyc from nitrosomonas europaea 0.769 143 173
ID Description Score Start End Superfamily
1vkyA01 Alpha Beta;3-Layer(aba) Sandwich;QueA-like;QueA-like 0.9266 5 393 3.40.1780.10
1vkyA01 Alpha Beta;3-Layer(aba) Sandwich;QueA-like;QueA-like 0.9178 5 393 3.40.1780.10
1vkyA02 Mainly Beta;Beta Barrel;Thrombin, subunit H;QueA-like 0.8677 64 170 2.40.10.240
af_P0A7F9_64_163_3.40.1780.10 Alpha Beta;3-Layer(aba) Sandwich;QueA-like;QueA-like 0.8207 64 202 3.40.1780.10
af_P0A7F9_64_163_3.40.1780.10 Alpha Beta;3-Layer(aba) Sandwich;QueA-like;QueA-like 0.806 64 202 3.40.1780.10
ID Description Score Start End GO Terms
AF-A0A496Q3K7-F1-model_v4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 2.4.99.17) (Queuosine biosynthesis protein QueA) 0.9669 1 393 GO:0002099
GO:0005737
GO:0008616
GO:0051075
AF-A0A496Q3K7-F1-model_v4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 2.4.99.17) (Queuosine biosynthesis protein QueA) 0.9642 1 393 GO:0002099
GO:0005737
GO:0008616
GO:0051075
AF-R7L5E8-F1-model_v4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.9617 271 393 GO:0002099
GO:0005737
GO:0008616
GO:0051075
AF-A0A357FSF0-F1-model_v4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.9567 184 393 GO:0002099
GO:0005737
GO:0008616
GO:0051075
AF-A0A2D8VBF0-F1-model_v4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 2.4.99.17) (Queuosine biosynthesis protein QueA) 0.955 1 393 GO:0002099
GO:0005737
GO:0008616
GO:0051075

Feature Viewer

pLDDT pTM Quality
87.14 0.86 High
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Predicted Structure (AlphaFold2)

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