F198346

General Info

Members Datasets Scaffolds Average Seq Length
146 81 146 368

Family's Representative Sequence

Representative Sequence 3300044712|Ga0453684_0034515|Ga0453684_0034515_3135_4448
Length 437
Sequence MSAKAFGPPVILDTGTHPANFSQQLIRMSISTPLDLPDSSVSAADPVDNSTSRNRVETLPARLPTPLAPRSAWVEIDLRRLRRNFALIQKDKPPGLQILSVVKDEGYGHGALAVARAALDTGAGFLALSTVEEAVRLRDQGIRAQLLLLGDRQESELPWCIDHDLTCSVGEPQNVRKLAQLAERAGKRVPVHLKINTGMNRYGVRWTEAAALAQAIHASPHLVLEGVLSHFSQSDETDKTFALLQLGRFEEALRAIAAQGNPVPLRHLCNSGGFLDLPRAHFDMVRLGILPLGVFPSSVCRRIPGIEPVMSVKARIAAIQKLDVGDCVGYGMRFTAASPRRIAVLPLGYGDGFPRVRNAGCALIHGMRAPLVGGVAMDALTVDITDIPAAQLWDEAVLMGRQGNDEISVHEVAKLKGSVSYDVLTSWRARLPRIYVE

Samples

Sample ID Description Type Environment
1 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
4 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
5 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
6 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
7 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
8 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
9 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
10 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
11 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
12 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
13 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
14 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
15 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
16 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
17 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
18 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
19 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
20 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
21 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
22 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
23 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
24 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
25 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
26 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
27 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
28 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
29 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
30 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
31 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
43 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
44 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
45 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
46 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
47 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
48 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
49 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
50 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
51 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
52 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
53 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
54 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
55 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
56 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
57 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
58 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
59 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
60 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
61 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
62 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
63 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
64 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
65 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
66 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
67 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
68 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
69 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
70 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
71 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
72 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
73 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
74 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
75 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
76 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
77 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
78 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
79 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
80 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
81 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 98.63
Stem 0
Stem Tuber 0
Unclassified 1.37

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10013476 3300003320 Bacteria 11103
2 rootH1_10124687 3300003323 Bacteria 6078
3 Ga0070690_100203929 3300005330 Unclassified 1377
4 Ga0070703_10000711 3300005406 Bacteria 11217
5 Ga0070709_10028628 3300005434 Bacteria 3324
6 Ga0070714_100051285 3300005435 Bacteria 3517
7 Ga0070714_100133867 3300005435 Bacteria 2217
8 Ga0070713_100015991 3300005436 Bacteria 5631
9 Ga0070713_100089749 3300005436 Bacteria 2641
10 Ga0070705_100005038 3300005440 Bacteria 6429
11 Ga0070705_100022417 3300005440 Bacteria 3375
12 Ga0070708_100000027 3300005445 Bacteria 97468
13 Ga0070708_100000417 3300005445 Bacteria 31932
14 Ga0070708_100006523 3300005445 Bacteria 9282
15 Ga0070708_100057356 3300005445 Bacteria 3467
16 Ga0070706_100000016 3300005467 Bacteria 174698
17 Ga0070706_100000117 3300005467 Bacteria 97475
18 Ga0070706_100000547 3300005467 Bacteria 43712
19 Ga0070706_100002192 3300005467 Bacteria 19880
20 Ga0070706_100336063 3300005467 Bacteria 1408
21 Ga0070707_100000060 3300005468 Bacteria 97475
22 Ga0070707_100004812 3300005468 Bacteria 12649
23 Ga0070707_100011548 3300005468 Bacteria 8237
24 Ga0070707_100014426 3300005468 Bacteria 7406
25 Ga0070707_100017278 3300005468 Bacteria 6781
26 Ga0070707_100064896 3300005468 Bacteria 3507
27 Ga0070707_100211845 3300005468 Bacteria 1888
28 Ga0070698_100010707 3300005471 Bacteria 9766
29 Ga0070698_100093937 3300005471 Bacteria 2979
30 Ga0070698_100194833 3300005471 Bacteria 1963
31 Ga0070699_100000784 3300005518 Bacteria 29316
32 Ga0070699_100000808 3300005518 Bacteria 28948
33 Ga0070699_100003036 3300005518 Bacteria 14887
34 Ga0070699_100004088 3300005518 Bacteria 12899
35 Ga0070699_100060082 3300005518 Bacteria 3293
36 Ga0070697_100000351 3300005536 Bacteria 36223
37 Ga0070697_100008781 3300005536 Bacteria 7890
38 Ga0070697_100008844 3300005536 Bacteria 7860
39 Ga0070697_100009053 3300005536 Bacteria 7778
40 Ga0070697_100017675 3300005536 Bacteria 5617
41 Ga0070697_100161925 3300005536 Bacteria 1890
42 Ga0070695_100039082 3300005545 Bacteria 2997
43 Ga0068863_100138477 3300005841 Unclassified 2326
44 Ga0068858_100110320 3300005842 Bacteria 2569
45 Ga0070717_10000007 3300006028 Bacteria 304340
46 Ga0070717_10080208 3300006028 Bacteria 2738
47 Ga0070712_100151162 3300006175 Bacteria 1783
48 Ga0075433_10169978 3300006852 Bacteria 1940
49 Ga0075436_100000226 3300006914 Bacteria 35139
50 Ga0075435_100058783 3300007076 Bacteria 3115
51 Ga0075435_100062072 3300007076 Bacteria 3032
52 Ga0075435_100095915 3300007076 Bacteria 2453
53 Ga0075435_100158681 3300007076 Bacteria 1904
54 Ga0099794_10000117 3300007265 Bacteria 29179
55 Ga0105240_10009344 3300009093 Bacteria 13896
56 Ga0105240_10082574 3300009093 Bacteria 3946
57 Ga0105240_10207908 3300009093 Bacteria 2289
58 Ga0157370_10018787 3300013104 Bacteria 6950
59 Ga0157374_10012563 3300013296 Bacteria 7369
60 Ga0157378_10287722 3300013297 Bacteria 1586
61 Ga0157375_10000074 3300013308 Bacteria 103033
62 Ga0163163_10000312 3300014325 Bacteria 47714
63 Ga0157376_10032802 3300014969 Bacteria 4173
64 Ga0207653_10000689 3300025885 Bacteria 11599
65 Ga0207692_10100005 3300025898 Bacteria 1590
66 Ga0207699_10032953 3300025906 Bacteria 2924
67 Ga0207699_10033781 3300025906 Bacteria 2894
68 Ga0207684_10000002 3300025910 Bacteria 1042751
69 Ga0207684_10000026 3300025910 Bacteria 316711
70 Ga0207684_10000148 3300025910 Bacteria 124604
71 Ga0207684_10000222 3300025910 Bacteria 87705
72 Ga0207684_10013203 3300025910 Bacteria 7149
73 Ga0207684_10022279 3300025910 Bacteria 5408
74 Ga0207684_10138118 3300025910 Bacteria 2094
75 Ga0207695_10005918 3300025913 Bacteria 16028
76 Ga0207646_10000143 3300025922 Bacteria 97493
77 Ga0207646_10000668 3300025922 Bacteria 44376
78 Ga0207646_10001778 3300025922 Bacteria 26121
79 Ga0207646_10030249 3300025922 Bacteria 4911
80 Ga0207646_10035242 3300025922 Bacteria 4520
81 Ga0207646_10041482 3300025922 Bacteria 4137
82 Ga0207646_10042722 3300025922 Bacteria 4072
83 Ga0207646_10051011 3300025922 Bacteria 3702
84 Ga0207646_10078356 3300025922 Bacteria 2954
85 Ga0207646_10170832 3300025922 Bacteria 1963
86 Ga0207700_10013946 3300025928 Bacteria 5252
87 Ga0207664_10001453 3300025929 Bacteria 15562
88 Ga0207664_10006282 3300025929 Bacteria 8165
89 Ga0207664_10019480 3300025929 Bacteria 5015
90 Ga0207691_10262826 3300025940 Unclassified 1487
91 Ga0207648_10159863 3300026089 Bacteria 1990
92 Ga0209588_1000036 3300027671 Bacteria 65612
93 Ga0265338_10030356 3300028800 Bacteria 5327
94 Ga0265324_10007489 3300029957 Bacteria 4415
95 Ga0316576_10008303 3300031727 Bacteria 6612
96 Ga0316578_10028592 3300031728 Unclassified 3158
97 Ga0316577_10068548 3300031733 Bacteria 1981
98 Ga0316585_10044726 3300032137 Bacteria 1415
99 Ga0373926_0007982 3300035083 Bacteria 3527
100 Ga0373943_0151330 3300035170 Unclassified 1257
101 Ga0373946_0030594 3300035171 Bacteria 2150
102 Ga0316574_0020643 3300035398 Unclassified 3901
103 Ga0373935_0001600 3300035692 Bacteria 12618
104 Ga0373927_0015380 3300035695 Bacteria 5057
105 Ga0373947_0007774 3300035725 Bacteria 6195
106 Ga0373937_0138189 3300036401 Bacteria 2279
107 Ga0373937_0318712 3300036401 Unclassified 1471
108 Ga0316584_0012133 3300036712 Bacteria 6070
109 Ga0316584_0012807 3300036712 Bacteria 5921
110 Ga0316584_0220966 3300036712 Bacteria 1392
111 Ga0373925_0003544 3300037068 Bacteria 12040
112 Ga0395905_0008707 3300037471 Bacteria 9988
113 Ga0395905_0025600 3300037471 Bacteria 5564
114 Ga0453684_0026065 3300044712 Bacteria 8463
115 Ga0453684_0034515 3300044712 Bacteria 7019
116 Ga0451576_0002134 3300045051 Bacteria 30694
117 Ga0451576_0012019 3300045051 Bacteria 9776
118 Ga0451576_0030738 3300045051 Bacteria 5735
119 Ga0451576_0036124 3300045051 Bacteria 5240
120 Ga0451576_0109383 3300045051 Unclassified 2876
121 Ga0495592_0000151 3300046454 Bacteria 60491
122 Ga0495651_0205062 3300046462 Bacteria 1377
123 Ga0495662_0021693 3300046476 Unclassified 3102
124 Ga0495664_0073972 3300046477 Bacteria 2038
125 Ga0495618_0005506 3300046514 Bacteria 7709
126 Ga0495628_0000092 3300046516 Bacteria 71184
127 Ga0495630_0019086 3300046517 Bacteria 5039
128 Ga0495630_0099559 3300046517 Unclassified 2199
129 Ga0495640_0024396 3300046533 Bacteria 4400
130 Ga0495586_0000559 3300046535 Bacteria 21546
131 Ga0495586_0099097 3300046535 Bacteria 1616
132 Ga0495645_0016420 3300046543 Bacteria 5285
133 Ga0495599_0002037 3300046678 Bacteria 11705
134 Ga0495658_0084415 3300046683 Bacteria 1870
135 Ga0495674_0004011 3300047319 Bacteria 14252
136 Ga0495676_0111800 3300047321 Unclassified 2003
137 Ga0495680_0120255 3300047322 Bacteria 1940
138 Ga0501034_0515434 3300049571 Unclassified 1108
139 Ga0501069_0034818 3300049585 Bacteria 2773
140 nmdc:mga0rr50_97524_c1 3300050513 Bacteria 2302
141 nmdc:mga08x19_143628_c1 3300050514 Bacteria 1613
142 nmdc:mga08x19_3285_c1 3300050514 Bacteria 9669
143 nmdc:mga08x19_68674_c1 3300050514 Bacteria 2307
144 nmdc:mga08x19_71850_c1 3300050514 Bacteria 2257
145 Ga0495595_0037756 3300053084 Bacteria 2198
146 Ga0495619_0045302 3300053085 Bacteria 2890

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300007076 Ga0075435_100062072 Ga0075435_1000620723 297
2 3300050514 nmdc:mga08x19_143628_c1 nmdc:mga08x19_143628_c1_335_1312 297
3 3300050514 nmdc:mga08x19_68674_c1 nmdc:mga08x19_68674_c1_36_962 303
4 3300005471 Ga0070698_100010707 Ga0070698_1000107076 308
5 3300006028 Ga0070717_10000007 Ga0070717_1000000744 309
6 3300025910 Ga0207684_10138118 Ga0207684_101381182 309
7 3300025922 Ga0207646_10170832 Ga0207646_101708322 313
8 3300005536 Ga0070697_100009053 Ga0070697_1000090534 315
9 3300025910 Ga0207684_10022279 Ga0207684_100222792 315
10 3300005468 Ga0070707_100004812 Ga0070707_1000048128 316
11 3300007076 Ga0075435_100158681 Ga0075435_1001586812 321
12 3300005445 Ga0070708_100000027 Ga0070708_10000002726 322
13 3300005467 Ga0070706_100000117 Ga0070706_10000011726 322
14 3300005468 Ga0070707_100000060 Ga0070707_10000006093 322
15 3300005518 Ga0070699_100000784 Ga0070699_10000078427 322
16 3300025910 Ga0207684_10000148 Ga0207684_1000014857 322
17 3300025922 Ga0207646_10000143 Ga0207646_1000014327 322
18 3300025922 Ga0207646_10041482 Ga0207646_100414822 322
19 3300050514 nmdc:mga08x19_71850_c1 nmdc:mga08x19_71850_c1_30_1001 322
20 3300049585 Ga0501069_0034818 Ga0501069_0034818_871_1854 326
21 3300005518 Ga0070699_100060082 Ga0070699_1000600822 328
22 3300005445 Ga0070708_100006523 Ga0070708_1000065234 329
23 3300005467 Ga0070706_100002192 Ga0070706_1000021927 329
24 3300005468 Ga0070707_100017278 Ga0070707_1000172786 329
25 3300005536 Ga0070697_100008844 Ga0070697_1000088442 329
26 3300025910 Ga0207684_10000026 Ga0207684_1000002659 329
27 3300025922 Ga0207646_10001778 Ga0207646_1000177816 329
28 3300005406 Ga0070703_10000711 Ga0070703_100007114 330
29 3300005440 Ga0070705_100005038 Ga0070705_1000050383 330
30 3300005445 Ga0070708_100000417 Ga0070708_10000041721 330
31 3300005467 Ga0070706_100000547 Ga0070706_10000054716 330
32 3300005468 Ga0070707_100014426 Ga0070707_1000144268 330
33 3300005518 Ga0070699_100000808 Ga0070699_1000008082 330
34 3300005536 Ga0070697_100017675 Ga0070697_1000176753 330
35 3300025885 Ga0207653_10000689 Ga0207653_1000068910 330
36 3300025910 Ga0207684_10000222 Ga0207684_1000022259 330
37 3300025922 Ga0207646_10051011 Ga0207646_100510112 330
38 3300005467 Ga0070706_100336063 Ga0070706_1003360632 342
39 3300005468 Ga0070707_100211845 Ga0070707_1002118451 342
40 3300005471 Ga0070698_100194833 Ga0070698_1001948332 342
41 3300005518 Ga0070699_100003036 Ga0070699_1000030365 342
42 3300005536 Ga0070697_100000351 Ga0070697_10000035118 342
43 3300005536 Ga0070697_100161925 Ga0070697_1001619252 342
44 3300025910 Ga0207684_10013203 Ga0207684_100132039 342
45 3300025922 Ga0207646_10078356 Ga0207646_100783562 342
46 3300005468 Ga0070707_100011548 Ga0070707_10001154812 343
47 3300005440 Ga0070705_100022417 Ga0070705_1000224173 347
48 3300005536 Ga0070697_100008781 Ga0070697_1000087811 347
49 3300005545 Ga0070695_100039082 Ga0070695_1000390823 347
50 3300005445 Ga0070708_100057356 Ga0070708_1000573563 354
51 3300005467 Ga0070706_100000016 Ga0070706_1000000163 354
52 3300005518 Ga0070699_100004088 Ga0070699_1000040886 354
53 3300006852 Ga0075433_10169978 Ga0075433_101699782 354
54 3300007265 Ga0099794_10000117 Ga0099794_100001173 354
55 3300025906 Ga0207699_10033781 Ga0207699_100337814 354
56 3300025910 Ga0207684_10000002 Ga0207684_10000002374 354
57 3300025922 Ga0207646_10030249 Ga0207646_100302494 354
58 3300025929 Ga0207664_10019480 Ga0207664_100194803 354
59 3300025922 Ga0207646_10042722 Ga0207646_100427225 355
60 3300005471 Ga0070698_100093937 Ga0070698_1000939372 358
61 3300025922 Ga0207646_10000668 Ga0207646_1000066816 358
62 3300005468 Ga0070707_100064896 Ga0070707_1000648963 360
63 3300025922 Ga0207646_10035242 Ga0207646_100352422 360
64 3300027671 Ga0209588_1000036 Ga0209588_100003624 360
65 3300049571 Ga0501034_0515434 Ga0501034_0515434_15_1097 360
66 3300013297 Ga0157378_10287722 Ga0157378_102877222 367
67 3300025940 Ga0207691_10262826 Ga0207691_102628262 367
68 3300037471 Ga0395905_0008707 Ga0395905_0008707_175_1335 368
69 3300037471 Ga0395905_0025600 Ga0395905_0025600_1269_2429 368
70 3300005434 Ga0070709_10028628 Ga0070709_100286284 369
71 3300005435 Ga0070714_100133867 Ga0070714_1001338672 369
72 3300005436 Ga0070713_100015991 Ga0070713_1000159914 369
73 3300005436 Ga0070713_100089749 Ga0070713_1000897492 369
74 3300006028 Ga0070717_10080208 Ga0070717_100802084 369
75 3300006175 Ga0070712_100151162 Ga0070712_1001511622 369
76 3300006914 Ga0075436_100000226 Ga0075436_10000022614 369
77 3300007076 Ga0075435_100058783 Ga0075435_1000587832 369
78 3300007076 Ga0075435_100095915 Ga0075435_1000959151 369
79 3300009093 Ga0105240_10082574 Ga0105240_100825742 369
80 3300009093 Ga0105240_10207908 Ga0105240_102079081 369
81 3300025898 Ga0207692_10100005 Ga0207692_101000052 369
82 3300025906 Ga0207699_10032953 Ga0207699_100329532 369
83 3300025928 Ga0207700_10013946 Ga0207700_100139463 369
84 3300025929 Ga0207664_10006282 Ga0207664_100062823 369
85 3300050513 nmdc:mga0rr50_97524_c1 nmdc:mga0rr50_97524_c1_212_1342 369
86 3300050514 nmdc:mga08x19_3285_c1 nmdc:mga08x19_3285_c1_5367_6497 369
87 3300009093 Ga0105240_10009344 Ga0105240_100093448 370
88 3300025913 Ga0207695_10005918 Ga0207695_1000591814 370
89 3300035083 Ga0373926_0007982 Ga0373926_0007982_46_1164 372
90 3300046462 Ga0495651_0205062 Ga0495651_0205062_19_1203 372
91 3300047322 Ga0495680_0120255 Ga0495680_0120255_441_1625 372
92 3300036401 Ga0373937_0318712 Ga0373937_0318712_120_1361 374
93 3300005330 Ga0070690_100203929 Ga0070690_1002039291 375
94 3300005841 Ga0068863_100138477 Ga0068863_1001384772 375
95 3300013296 Ga0157374_10012563 Ga0157374_100125632 375
96 3300013308 Ga0157375_10000074 Ga0157375_1000007414 375
97 3300014325 Ga0163163_10000312 Ga0163163_1000031217 375
98 3300014969 Ga0157376_10032802 Ga0157376_100328024 375
99 3300026089 Ga0207648_10159863 Ga0207648_101598632 375
100 3300028800 Ga0265338_10030356 Ga0265338_100303562 375
101 3300031728 Ga0316578_10028592 Ga0316578_100285923 375
102 3300032137 Ga0316585_10044726 Ga0316585_100447261 375
103 3300035398 Ga0316574_0020643 Ga0316574_0020643_419_1585 375
104 3300036712 Ga0316584_0012133 Ga0316584_0012133_2790_3956 375
105 3300036712 Ga0316584_0220966 Ga0316584_0220966_116_1282 375
106 3300044712 Ga0453684_0034515 Ga0453684_0034515_3135_4448 375
107 3300045051 Ga0451576_0036124 Ga0451576_0036124_2505_3734 375
108 3300035170 Ga0373943_0151330 Ga0373943_0151330_55_1200 377
109 3300035171 Ga0373946_0030594 Ga0373946_0030594_508_1653 377
110 3300035692 Ga0373935_0001600 Ga0373935_0001600_10874_12019 377
111 3300035695 Ga0373927_0015380 Ga0373927_0015380_3501_4646 377
112 3300035725 Ga0373947_0007774 Ga0373947_0007774_1501_2646 377
113 3300037068 Ga0373925_0003544 Ga0373925_0003544_1393_2538 377
114 3300046517 Ga0495630_0099559 Ga0495630_0099559_435_1580 377
115 3300047321 Ga0495676_0111800 Ga0495676_0111800_190_1335 377
116 3300045051 Ga0451576_0109383 Ga0451576_0109383_136_1299 378
117 3300005842 Ga0068858_100110320 Ga0068858_1001103202 379
118 3300031727 Ga0316576_10008303 Ga0316576_100083034 380
119 3300031733 Ga0316577_10068548 Ga0316577_100685482 380
120 3300036712 Ga0316584_0012807 Ga0316584_0012807_1489_2691 380
121 3300044712 Ga0453684_0026065 Ga0453684_0026065_5778_6920 380
122 3300045051 Ga0451576_0030738 Ga0451576_0030738_1245_2492 380
123 3300046454 Ga0495592_0000151 Ga0495592_0000151_55017_56213 380
124 3300046476 Ga0495662_0021693 Ga0495662_0021693_1430_2626 380
125 3300046477 Ga0495664_0073972 Ga0495664_0073972_576_1772 380
126 3300046514 Ga0495618_0005506 Ga0495618_0005506_2997_4193 380
127 3300046516 Ga0495628_0000092 Ga0495628_0000092_14120_15316 380
128 3300046533 Ga0495640_0024396 Ga0495640_0024396_2035_3231 380
129 3300046535 Ga0495586_0000559 Ga0495586_0000559_11974_13170 380
130 3300046543 Ga0495645_0016420 Ga0495645_0016420_2284_3480 380
131 3300046678 Ga0495599_0002037 Ga0495599_0002037_591_1787 380
132 3300046683 Ga0495658_0084415 Ga0495658_0084415_282_1478 380
133 3300047319 Ga0495674_0004011 Ga0495674_0004011_4213_5409 380
134 3300053084 Ga0495595_0037756 Ga0495595_0037756_457_1737 381
135 3300053085 Ga0495619_0045302 Ga0495619_0045302_1554_2834 381
136 3300003323 rootH1_10124687 rootH1_101246872 384
137 3300005435 Ga0070714_100051285 Ga0070714_1000512851 384
138 3300025929 Ga0207664_10001453 Ga0207664_100014534 384
139 3300003320 rootH2_10013476 rootH2_100134763 386
140 3300013104 Ga0157370_10018787 Ga0157370_100187874 386
141 3300029957 Ga0265324_10007489 Ga0265324_100074893 386
142 3300036401 Ga0373937_0138189 Ga0373937_0138189_15_1196 386
143 3300045051 Ga0451576_0002134 Ga0451576_0002134_3004_4227 386
144 3300045051 Ga0451576_0012019 Ga0451576_0012019_6128_7351 386
145 3300046517 Ga0495630_0019086 Ga0495630_0019086_666_1847 386
146 3300046535 Ga0495586_0099097 Ga0495586_0099097_324_1505 386

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00842

Ala_racemase_C

Alanine racemase, C-terminal domain

309

435

0.97

PF01168

Ala_racemase_N

Alanine racemase, N-terminal domain

76

296

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
4y2w-assembly1.cif.gz_B crystal structure of a thermostable alanine racemase from thermoanaerobacter tengcongensis mb4 0.9613 4 374
5yyc-assembly1.cif.gz_C crystal structure of alanine racemase from bacillus pseudofirmus (of4) 0.9559 8 375
3e5p-assembly1.cif.gz_C crystal structure of alanine racemase from e.faecalis 0.9415 8 373
5yyc-assembly1.cif.gz_C crystal structure of alanine racemase from bacillus pseudofirmus (of4) 0.9382 8 375
4xbj-assembly2.cif.gz_D y274f alanine racemase from e. coli inhibited by l-ala-p 0.9359 10 375
ID Description Score Start End Superfamily
4y2wB01 Mainly Beta;Beta Barrel;Lyase, Ornithine Decarboxylase; Chain A, domain 1;Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.9722 248 374 2.40.37.10
4y2wB02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.9679 17 228 3.20.20.10
5yycC01 Mainly Beta;Beta Barrel;Lyase, Ornithine Decarboxylase; Chain A, domain 1;Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.9627 248 371 2.40.37.10
6q71A02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.958 17 228 3.20.20.10
1l6fA02 Mainly Beta;Beta Barrel;Lyase, Ornithine Decarboxylase; Chain A, domain 1;Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.9573 248 375 2.40.37.10
ID Description Score Start End GO Terms
AF-A0A645JF22-F1-model_v4 Alanine racemase (EC 5.1.1.1) 0.9858 249 376 GO:0005829
GO:0008784
GO:0030170
GO:0030632
AF-A0A3D0PB66-F1-model_v4 Alanine racemase 0.9824 266 372 GO:0005829
GO:0008784
GO:0030170
GO:0030632
AF-A0A350XV14-F1-model_v4 Alanine racemase 0.9817 263 366 GO:0005829
GO:0008784
GO:0030170
GO:0030632
AF-A0A3C0SL77-F1-model_v4 Alanine racemase 0.9789 210 374 GO:0005829
GO:0008784
GO:0030170
GO:0030632
AF-A0A7W1T2Z4-F1-model_v4 Alanine racemase 0.9785 266 372 GO:0005829
GO:0008784
GO:0030170
GO:0030632

Feature Viewer

pLDDT pTM Quality
93.02 0.89 High
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Predicted Structure (AlphaFold2)

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