F198359

General Info

Members Datasets Scaffolds Average Seq Length
146 108 292 246

Family's Representative Sequence

Representative Sequence 3300044842|Ga0466957_0014326|Ga0466957_0014326_1296_2180
Length 294
Sequence MIIKHMRKLLTDNFPLVTICKPDYNIYQSGYKMPGKMHEFCGYKIIINMYNQIESKVVIVTGASSGIGKAIALKLSKFGARLILSGRRMEQLEKVEDEIKSAGGEAICVTTDVRHKVDMENLVNAAVKKYGRLDVIINNAGVAQVSRIDELDTDGWEEMIDINLKGVLYGMAAAIPVFRQQRSGHIVNIISTAGIKIVPTQGVYAGTKNAVRTITEAFRQESDGAIRITGISPGMVKTDFARNMKNEATRSTILENMEQLAIAPEAVADAVLYAISQPADVEVGEIVIRPARQN

Samples

Sample ID Description Type Environment
1 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
5 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
6 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
7 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
8 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
9 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
10 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
11 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
12 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
13 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
14 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
15 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
16 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
17 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
18 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
19 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
20 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
21 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
22 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
23 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
24 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
25 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
26 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
27 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
28 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
29 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
30 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
31 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
32 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
33 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
34 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
35 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
36 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
42 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
43 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
44 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
45 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
46 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
47 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
48 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
49 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
50 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
51 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
52 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
53 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
54 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
55 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
56 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
57 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
58 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
59 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
60 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
61 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
62 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
63 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
64 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
65 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
66 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
67 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
68 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
69 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
70 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
71 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
72 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
73 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
74 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
75 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
76 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
77 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
78 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
79 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
80 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
81 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
82 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
83 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
84 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
85 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
86 2523231067 Pleomorphomonas oryzae DSM 16300 Isolate Unclassified
87 2585428061 Chryseobacterium sp. CF356 Isolate Rhizosphere
88 2585428095 Chryseobacterium sp. YR005 Isolate Rhizosphere
89 2585428115 Chryseobacterium sp. YR561 Isolate Rhizosphere
90 2585428187 Chryseobacterium sp. YR460 Isolate Rhizosphere
91 2643221667 Flavobacterium sp. Root420 Isolate Unclassified
92 2738541279 Flavobacterium sp. GV069 Isolate Unclassified
93 2738541285 Flavobacterium sp. GV030 Isolate Unclassified
94 2738543007 Flavobacterium sp. GV063 Isolate Unclassified
95 2738543031 Pleomorphomonas sp. CF100 Isolate Unclassified
96 2775506739 Chryseobacterium sp. 1335 Isolate Unclassified
97 2818991444 Filimonas endophytica 3197 Isolate Unclassified
98 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
99 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
100 2857618242 Flavobacterium sp. R-74482 Isolate Unclassified
101 2857627736 Pedobacter sp. R-74587 Isolate Unclassified
102 2914759650 Rhizosphaericola mali Isolate Rhizosphere
103 2929154850 Filimonas sp. R-72421 Hybrid assembly Isolate Unclassified
104 2945924605 Chryseobacterium ginsenosidimutans W1I9 Isolate Rhizosphere
105 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere
106 2946019816 Chryseobacterium sp. W4I1 Isolate Rhizosphere
107 2993372514 Chryseobacterium sp. SLBN-27 Isolate Rhizosphere
108 2993480792 Chryseobacterium nepalense SLBN-92 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 83.56
Metatranscriptomes 0
Isolates 16.44

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 21.92
Nodule 0
Rhizoplane 0
Rhizosphere 62.33
Stem 0
Stem Tuber 0
Unclassified 4.79

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0466957_0014326 3300044842 Bacteria 4616
2 SwRhRL2b_contig_2011997 2162886007 Bacteria 1585
3 SwRhRL2b_contig_2871430 2162886007 Bacteria 4666
4 rootL2_10075395 3300003322 Bacteria 8008
5 rootH1_10339881 3300003323 Bacteria 1445
6 Ga0055535_1000572 3300003761 Bacteria 31004
7 Ga0055526_1007610 3300003771 Bacteria 5590
8 Ga0055526_1008563 3300003771 Bacteria 5075
9 Ga0055526_1043311 3300003771 Unclassified 1098
10 Ga0055528_1001292 3300003790 Bacteria 15732
11 Ga0055531_10012740 3300003794 Unclassified 3929
12 Ga0055531_10015984 3300003794 Bacteria 3268
13 Ga0065165_1000493 3300005262 Bacteria 60949
14 Ga0065714_10004681 3300005288 Bacteria 6052
15 Ga0065714_10064709 3300005288 Bacteria 22067
16 Ga0065704_10000289 3300005289 Bacteria 49641
17 Ga0065704_10077350 3300005289 Bacteria 4766
18 Ga0070683_100000821 3300005329 Bacteria 23016
19 Ga0070709_10000117 3300005434 Bacteria 54159
20 Ga0070714_100009542 3300005435 Bacteria 7636
21 Ga0070714_100163499 3300005435 Bacteria 2015
22 Ga0070713_100007243 3300005436 Bacteria 7769
23 Ga0070684_100010836 3300005535 Bacteria 7241
24 Ga0068852_100523597 3300005616 Bacteria 1183
25 Ga0105239_10000786 3300010375 Bacteria 45039
26 Ga0157373_10001334 3300013100 Bacteria 18896
27 Ga0157373_10001570 3300013100 Bacteria 17432
28 Ga0157373_10009344 3300013100 Bacteria 7245
29 Ga0157373_10094115 3300013100 Bacteria 2110
30 Ga0157371_10000050 3300013102 Bacteria 183160
31 Ga0157371_10001364 3300013102 Bacteria 25627
32 Ga0157370_10004078 3300013104 Bacteria 16933
33 Ga0157370_10014969 3300013104 Bacteria 7909
34 Ga0157370_10043917 3300013104 Bacteria 4299
35 Ga0157370_10045441 3300013104 Bacteria 4213
36 Ga0157370_10562680 3300013104 Bacteria 1045
37 Ga0157369_10000004 3300013105 Bacteria 479764
38 Ga0157375_10000913 3300013308 Bacteria 25691
39 Ga0182006_1000345 3300015261 Bacteria 39520
40 Ga0182007_10000006 3300015262 Bacteria 427355
41 Ga0163161_10000012 3300017792 Bacteria 264639
42 Ga0163161_10000232 3300017792 Bacteria 51372
43 Ga0163161_10061932 3300017792 Unclassified 2725
44 Ga0163161_10265442 3300017792 Bacteria 1342
45 Ga0209258_100378 3300025242 Bacteria 57308
46 Ga0209646_1007608 3300025246 Unclassified 1762
47 Ga0209148_1000481 3300025254 Bacteria 41878
48 Ga0209673_1000517 3300025273 Bacteria 63164
49 Ga0209564_1001818 3300025295 Bacteria 19603
50 Ga0209564_1037154 3300025295 Unclassified 1378
51 Ga0209758_1004545 3300025297 Bacteria 11461
52 Ga0209050_1001531 3300025298 Bacteria 24311
53 Ga0209050_1036504 3300025298 Bacteria 1433
54 Ga0207426_1005445 3300025302 Bacteria 5807
55 Ga0209257_1000179 3300025304 Bacteria 158484
56 Ga0209257_1002201 3300025304 Bacteria 20163
57 Ga0207699_10000035 3300025906 Bacteria 129523
58 Ga0207700_10005289 3300025928 Bacteria 7696
59 Ga0207664_10049981 3300025929 Bacteria 3295
60 Ga0207661_10001498 3300025944 Bacteria 15820
61 Ga0207698_10447683 3300026142 Bacteria 1246
62 Ga0307515_10000003 3300028794 Bacteria 891317
63 Ga0307515_10105146 3300028794 Unclassified 3364
64 Ga0307513_10318873 3300031456 Bacteria 1313
65 Ga0307405_10000020 3300031731 Bacteria 156779
66 Ga0307413_10000064 3300031824 Bacteria 26787
67 Ga0307407_10000036 3300031903 Bacteria 76457
68 Ga0307412_10000023 3300031911 Bacteria 237005
69 Ga0307412_10019340 3300031911 Bacteria 4122
70 Ga0307409_100270979 3300031995 Bacteria 1563
71 Ga0307416_100000007 3300032002 Bacteria 433284
72 Ga0307414_10000322 3300032004 Bacteria 27336
73 Ga0307414_10006727 3300032004 Bacteria 6431
74 Ga0307414_10016115 3300032004 Bacteria 4534
75 Ga0307414_10032946 3300032004 Bacteria 3418
76 Ga0307414_10033354 3300032004 Bacteria 3402
77 Ga0307414_10395647 3300032004 Bacteria 1198
78 Ga0307411_10000001 3300032005 Bacteria 931810
79 Ga0439447_022931 3300041407 Bacteria 1630
80 Ga0439445_0000070 3300042004 Bacteria 15513
81 Ga0466972_0092253 3300044658 Bacteria 1436
82 Ga0495627_004759 3300046453 Bacteria 5612
83 Ga0495627_042664 3300046453 Bacteria 1389
84 Ga0495638_0134314 3300046460 Bacteria 1451
85 Ga0495607_0043383 3300046501 Bacteria 2660
86 Ga0495606_0010399 3300046507 Bacteria 7727
87 Ga0495606_0027309 3300046507 Bacteria 4051
88 Ga0495610_0000495 3300046512 Bacteria 40233
89 Ga0495616_0013697 3300046513 Bacteria 4567
90 Ga0495632_0003376 3300046519 Bacteria 11375
91 Ga0495643_0068903 3300046522 Bacteria 1861
92 Ga0495663_0007249 3300046525 Bacteria 3060
93 Ga0495633_0000137 3300046558 Bacteria 96876
94 Ga0495633_0000951 3300046558 Bacteria 24071
95 Ga0495625_0001175 3300046660 Bacteria 33641
96 Ga0495625_0002868 3300046660 Bacteria 18060
97 Ga0495625_0006572 3300046660 Bacteria 10318
98 Ga0495660_0020578 3300046810 Bacteria 3782
99 Ga0495686_0000537 3300047472 Bacteria 54196
100 Ga0496121_0010616 3300048924 Bacteria 10347
101 Ga0496122_0006909 3300048925 Bacteria 12824
102 Ga0496123_0001438 3300048926 Bacteria 33175
103 Ga0496126_0003904 3300048929 Bacteria 18331
104 Ga0501031_0139797 3300049568 Bacteria 1582
105 Ga0501036_0010538 3300049572 Bacteria 7637
106 Ga0501043_0028327 3300049579 Bacteria 4397
107 Ga0501249_003099 3300049679 Bacteria 3346
108 Ga0501266_000019 3300049763 Bacteria 114355
109 Ga0501269_000098 3300049766 Bacteria 27230
110 Ga0500578_0032966 3300053086 Bacteria 3330
111 Ga0500644_0043109 3300053088 Bacteria 1508
112 Ga0500646_0058654 3300053090 Unclassified 1127
113 Ga0500651_0000084 3300053093 Bacteria 60127
114 Ga0500651_0005417 3300053093 Bacteria 7288
115 Ga0500658_0000003 3300053134 Bacteria 512506
116 Ga0500559_0158259 3300053136 Bacteria 1064
117 Ga0500577_0039443 3300053142 Bacteria 1712
118 Ga0500622_0000009 3300053156 Bacteria 419980
119 Ga0500622_0000016 3300053156 Bacteria 337983
120 Ga0500622_0003033 3300053156 Bacteria 11597
121 Ga0500622_0017964 3300053156 Bacteria 3762
122 Ga0500661_005166 3300055283 Bacteria 2444
123 2523470408 2523231067 Bacteria 5230452
124 2587750524 2585428061 Bacteria 3939663
125 2587866836 2585428095 Bacteria 3789702
126 2587943464 2585428115 Bacteria 4420269
127 2588234088 2585428187 Bacteria 4629388
128 2644372652 2643221667 Bacteria 5627472
129 2738732313 2738541279 Bacteria 6149495
130 2738764878 2738541285 Bacteria 6150075
131 2739213893 2738543007 Bacteria 6149845
132 2739351841 2738543031 Bacteria 5769731
133 2775673587 2775506739 Bacteria 3855222
134 2819587424 2818991444 Bacteria 6968812
135 2842725909 2842722452 Bacteria 6263924
136 2842912913 2842909656 Bacteria 6185908
137 2857618723 2857618242 Bacteria 5635925
138 2857628166 2857627736 Bacteria 5625397
139 2914761031 2914759650 Bacteria 4701441
140 2914761705 2914759650 Bacteria 4701441
141 2929156504 2929154850 Bacteria 6753285
142 2945926527 2945924605 Bacteria 4296724
143 2945998158 2945997725 Bacteria 6404843
144 2946021097 2946019816 Bacteria 4621265
145 2993373711 2993372514 Bacteria 4214139
146 2993483679 2993480792 Bacteria 4022225
147 Ga0466957_0014326
148 SwRhRL2b_contig_2011997
149 SwRhRL2b_contig_2871430
150 rootL2_10075395
151 rootH1_10339881
152 Ga0055535_1000572
153 Ga0055526_1007610
154 Ga0055526_1008563
155 Ga0055526_1043311
156 Ga0055528_1001292
157 Ga0055531_10012740
158 Ga0055531_10015984
159 Ga0065165_1000493
160 Ga0065714_10004681
161 Ga0065714_10064709
162 Ga0065704_10000289
163 Ga0065704_10077350
164 Ga0070683_100000821
165 Ga0070709_10000117
166 Ga0070714_100009542
167 Ga0070714_100163499
168 Ga0070713_100007243
169 Ga0070684_100010836
170 Ga0068852_100523597
171 Ga0105239_10000786
172 Ga0157373_10001334
173 Ga0157373_10001570
174 Ga0157373_10009344
175 Ga0157373_10094115
176 Ga0157371_10000050
177 Ga0157371_10001364
178 Ga0157370_10004078
179 Ga0157370_10014969
180 Ga0157370_10043917
181 Ga0157370_10045441
182 Ga0157370_10562680
183 Ga0157369_10000004
184 Ga0157375_10000913
185 Ga0182006_1000345
186 Ga0182007_10000006
187 Ga0163161_10000012
188 Ga0163161_10000232
189 Ga0163161_10061932
190 Ga0163161_10265442
191 Ga0209258_100378
192 Ga0209646_1007608
193 Ga0209148_1000481
194 Ga0209673_1000517
195 Ga0209564_1001818
196 Ga0209564_1037154
197 Ga0209758_1004545
198 Ga0209050_1001531
199 Ga0209050_1036504
200 Ga0207426_1005445
201 Ga0209257_1000179
202 Ga0209257_1002201
203 Ga0207699_10000035
204 Ga0207700_10005289
205 Ga0207664_10049981
206 Ga0207661_10001498
207 Ga0207698_10447683
208 Ga0307515_10000003
209 Ga0307515_10105146
210 Ga0307513_10318873
211 Ga0307405_10000020
212 Ga0307413_10000064
213 Ga0307407_10000036
214 Ga0307412_10000023
215 Ga0307412_10019340
216 Ga0307409_100270979
217 Ga0307416_100000007
218 Ga0307414_10000322
219 Ga0307414_10006727
220 Ga0307414_10016115
221 Ga0307414_10032946
222 Ga0307414_10033354
223 Ga0307414_10395647
224 Ga0307411_10000001
225 Ga0439447_022931
226 Ga0439445_0000070
227 Ga0466972_0092253
228 Ga0495627_004759
229 Ga0495627_042664
230 Ga0495638_0134314
231 Ga0495607_0043383
232 Ga0495606_0010399
233 Ga0495606_0027309
234 Ga0495610_0000495
235 Ga0495616_0013697
236 Ga0495632_0003376
237 Ga0495643_0068903
238 Ga0495663_0007249
239 Ga0495633_0000137
240 Ga0495633_0000951
241 Ga0495625_0001175
242 Ga0495625_0002868
243 Ga0495625_0006572
244 Ga0495660_0020578
245 Ga0495686_0000537
246 Ga0496121_0010616
247 Ga0496122_0006909
248 Ga0496123_0001438
249 Ga0496126_0003904
250 Ga0501031_0139797
251 Ga0501036_0010538
252 Ga0501043_0028327
253 Ga0501249_003099
254 Ga0501266_000019
255 Ga0501269_000098
256 Ga0500578_0032966
257 Ga0500644_0043109
258 Ga0500646_0058654
259 Ga0500651_0000084
260 Ga0500651_0005417
261 Ga0500658_0000003
262 Ga0500559_0158259
263 Ga0500577_0039443
264 Ga0500622_0000009
265 Ga0500622_0000016
266 Ga0500622_0003033
267 Ga0500622_0017964
268 Ga0500661_005166
269 2523470408
270 2587750524
271 2587866836
272 2587943464
273 2588234088
274 2644372652
275 2738732313
276 2738764878
277 2739213893
278 2739351841
279 2775673587
280 2819587424
281 2842725909
282 2842912913
283 2857618723
284 2857628166
285 2914761031
286 2914761705
287 2929156504
288 2945926527
289 2945998158
290 2946021097
291 2993373711
292 2993483679

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00106

adh_short

short chain dehydrogenase

56

249

0.98

PF13561

adh_short_C2

Enoyl-(Acyl carrier protein) reductase

62

289

0.91

PF08659

KR

KR domain

56

232

0.88

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

58

288

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
3tfo-assembly1.cif.gz_B crystal structure of a putative 3-oxoacyl-(acyl-carrier-protein) reductase from sinorhizobium meliloti 0.9693 6 243
3tfo-assembly1.cif.gz_B crystal structure of a putative 3-oxoacyl-(acyl-carrier-protein) reductase from sinorhizobium meliloti 0.9604 6 243
3tfo-assembly1.cif.gz_D crystal structure of a putative 3-oxoacyl-(acyl-carrier-protein) reductase from sinorhizobium meliloti 0.958 7 242
3tfo-assembly1.cif.gz_C crystal structure of a putative 3-oxoacyl-(acyl-carrier-protein) reductase from sinorhizobium meliloti 0.9572 6 242
2jap-assembly1.cif.gz_C clavulanic acid dehydrogenase: structural and biochemical analysis of the final step in the biosynthesis of the beta-lactamase inhibitor clavulanic acid 0.9425 3 245
ID Description Score Start End Superfamily
3tfoB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9693 6 243 3.40.50.720
af_A0A0P0X9U1_21_128_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9638 3 93 3.40.50.720
3tfoB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9604 6 243 3.40.50.720
af_Q6PKH6_18_219_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9439 4 185 3.40.50.720
af_C6T421_12_106_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9373 2 89 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A838DWV4-F1-model_v4 SDR family NAD(P)-dependent oxidoreductase 0.9926 1 69
AF-A0A2V9WL20-F1-model_v4 SDR family NAD(P)-dependent oxidoreductase 0.9742 4 92 GO:0016020
GO:0016491
AF-A0A2N0QKI9-F1-model_v4 NAD(P)-binding protein 0.972 5 128 GO:0005829
GO:0009688
GO:0010301
AF-A0A5N9HC11-F1-model_v4 SDR family NAD(P)-dependent oxidoreductase 0.9716 5 113 GO:0016491
AF-X1HCU3-F1-model_v4 Uncharacterized protein 0.9713 1 91

Map